mRNA_H-paniculata_contig26348.7196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26348.7196.1
Unique NamemRNA_H-paniculata_contig26348.7196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26348.7196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26348contigH-paniculata_contig26348:210..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.4626508-UTR-H-paniculata_contig26348:209..2271622929788.4626508-UTR-H-paniculata_contig26348:209..227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26348 210..227 +
1691481010.9917088-UTR-H-paniculata_contig26348:209..2271691481010.9917088-UTR-H-paniculata_contig26348:209..227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26348 210..227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.4737628-CDS-H-paniculata_contig26348:227..5511622929788.4737628-CDS-H-paniculata_contig26348:227..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26348 228..551 +
1691481011.0021648-CDS-H-paniculata_contig26348:227..5511691481011.0021648-CDS-H-paniculata_contig26348:227..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26348 228..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26348.7196.1prot_H-paniculata_contig26348.7196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26348 228..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26348.7196.1

>prot_H-paniculata_contig26348.7196.1 ID=prot_H-paniculata_contig26348.7196.1|Name=mRNA_H-paniculata_contig26348.7196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MTRKVSPVGDRTGPAKEARAFGEQTTEQQESTTAGGAAPGGRWVSVTAGG
RMPPRLSQPVKVSTVRKFLRDYHDYEEELTISNSDGGGRVASPLREVVAP
YIQKMIHA
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mRNA from alignment at H-paniculata_contig26348:210..551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26348.7196.1 ID=mRNA_H-paniculata_contig26348.7196.1|Name=mRNA_H-paniculata_contig26348.7196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig26348:210..551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGAGACACGTCGAATATGACGAGGAAAGTATCGCCTGTTGGAGACAG
GACTGGGCCCGCCAAGGAGGCAAGGGCGTTTGGGGAACAGACAACCGAAC
AGCAAGAGAGCACCACGGCGGGCGGAGCTGCGCCGGGAGGACGATGGGTG
AGTGTGACGGCTGGTGGGAGAATGCCGCCACGTCTCAGCCAACCAGTAAA
AGTTTCAACGGTGCGCAAGTTTTTGAGAGATTACCACGACTATGAGGAGG
AGTTAACCATCTCTAACAGTGATGGGGGTGGGCGCGTGGCCTCTCCTTTG
AGGGAGGTGGTTGCCCCATACATACAAAAGATGATTCATGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig26348:210..551+

>mRNA_H-paniculata_contig26348.7196.1 ID=mRNA_H-paniculata_contig26348.7196.1|Name=mRNA_H-paniculata_contig26348.7196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig26348:210..551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAGGAAAGTATCGCCTGTTGGAGACAGGACTGGGCCCGCCAAGGA
GGCAAGGGCGTTTGGGGAACAGACAACCGAACAGCAAGAGAGCACCACGG
CGGGCGGAGCTGCGCCGGGAGGACGATGGGTGAGTGTGACGGCTGGTGGG
AGAATGCCGCCACGTCTCAGCCAACCAGTAAAAGTTTCAACGGTGCGCAA
GTTTTTGAGAGATTACCACGACTATGAGGAGGAGTTAACCATCTCTAACA
GTGATGGGGGTGGGCGCGTGGCCTCTCCTTTGAGGGAGGTGGTTGCCCCA
TACATACAAAAGATGATTCATGCCATGACGAGGAAAGTATCGCCTGTTGG
AGACAGGACTGGGCCCGCCAAGGAGGCAAGGGCGTTTGGGGAACAGACAA
CCGAACAGCAAGAGAGCACCACGGCGGGCGGAGCTGCGCCGGGAGGACGA
TGGGTGAGTGTGACGGCTGGTGGGAGAATGCCGCCACGTCTCAGCCAACC
AGTAAAAGTTTCAACGGTGCGCAAGTTTTTGAGAGATTACCACGACTATG
AGGAGGAGTTAACCATCTCTAACAGTGATGGGGGTGGGCGCGTGGCCTCT
CCTTTGAGGGAGGTGGTTGCCCCATACATACAAAAGATGATTCATGCC
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