mRNA_H-paniculata_contig26315.7187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26315.7187.1
Unique NamemRNA_H-paniculata_contig26315.7187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: D7FQI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI2_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 5.470e-38
Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    1 GYRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGS--EGTPKPFQTWYRVVKKYVMGDNYYVKTFSGTENLP 255
            G+RI ANEWDAFP  HLH PGAVF TT RHPVDRWYSQYRFEHVEHRDGS  E    PF  WY+ +K Y MGDNYYVKTF G  N P
Sbjct:  187 GHRITANEWDAFPMSHLHLPGAVFGTTFRHPVDRWYSQYRFEHVEHRDGSDPEKESMPFHVWYKRMKPYDMGDNYYVKTFCGKPNPP 273
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: D7G8S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S3_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.410e-37
Identity = 61/87 (70.11%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 GYRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGS--EGTPKPFQTWYRVVKKYVMGDNYYVKTFSGTENLP 255
            G+RI ANEWDAFP  HL+ PGAVF TT RHPVDRWYSQYRFEHVEHRDGS  E    PF  WY+ ++ Y+MGDNYYVKTF G  N P
Sbjct:  191 GHRITANEWDAFPMSHLNLPGAVFGTTFRHPVDRWYSQYRFEHVEHRDGSDPEKESMPFLVWYKRMRPYIMGDNYYVKTFCGKANPP 277
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.590e-29
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 GYRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGSEGTPK--PFQTWYRVVKKYVMGDNYYVKTFSG 240
            GYR+ +NEWD  P  HL   GA+FATT+RHPVDRWYSQYRFEH+EHRDGS+   +  PF  WY+ +++  MGDN Y+KTF G
Sbjct:  636 GYRLTSNEWDVLPIEHLTLQGAIFATTLRHPVDRWYSQYRFEHLEHRDGSKPGSELLPFDLWYKKIRQDEMGDNAYIKTFCG 717
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: A0A6H5KG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG32_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.630e-27
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 GYRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGSEGTPK--PFQTWYRVVKKYVMGDNYYVKTFSGTENLP 255
            G+RI ANEWDAFP  HL  PGAVF TT        +SQYRFEHVEHRDGS+   +  PF  WY+ ++ Y+MGDNYYVKTF G  N P
Sbjct:  175 GHRITANEWDAFPKSHLTLPGAVFVTT--------FSQYRFEHVEHRDGSDPKKERMPFDVWYKRMRPYIMGDNYYVKTFCGKPNPP 253
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: A0A836CC08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC08_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.330e-26
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 GYRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGS-EGTPKPFQTWYRVVKKYVMGDNYYVKTFSGTEN 249
            G+RI ANEWDA P   L  PGAVF T +R P+DRWYSQYRFEHVEHRDGS +    PF+ WY        G NYYVK F+G EN
Sbjct:  204 GFRITANEWDALPRSTLTLPGAVFVTMLRSPLDRWYSQYRFEHVEHRDGSPKNVTMPFERWYPRYAAGSQGHNYYVKAFTGEEN 287
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: A0A836C8W3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.880e-26
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    7 RIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDG---SEGTPKPFQTWYRVVKKYVMGDNYYVKTFSGTEN 249
            R+ ANEWDA P   L  PGAVF T++RHP+DRWYSQYRFEH+EHRDG   +      F  WY    +   G+NYYVKTF G EN
Sbjct:   93 RMTANEWDALPRSQLTLPGAVFLTSLRHPLDRWYSQYRFEHLEHRDGECMAASKQMVFTKWYPNFARDSQGNNYYVKTFCGAEN 176
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: A0A7S4DA02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA02_HETAK)

HSP 1 Score: 100 bits (250), Expect = 2.960e-24
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 GYRIVANEWDAFPAHHL-HFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGSE-GTP-KPFQTWYRVVKKYVMGDNYYVKTFSGTENL 252
            G+RIV+NEWDAF    L ++  AVFATT+R P++RW+SQYRFEHVEHRDG++ G+P  PF+ W  + ++  +GD+YY+K F G ENL
Sbjct:   43 GHRIVSNEWDAFTNSFLTNYKEAVFATTLRDPIERWFSQYRFEHVEHRDGTKKGSPVMPFEKW--LPRQAGLGDHYYLKCFVGDENL 127
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: W7TRT1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRT1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.980e-24
Identity = 52/88 (59.09%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    4 YRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGS--EGTPKPFQTWYRVVKKYVMGDNYYVKTFSG--TENLP 255
            +RI ANEWD F         AVFATT+R P DRWYSQYRFEHVEHRDG+     PKPF  WY       MG NYYVKTF G  TE  P
Sbjct:  374 FRIAANEWDPFLRAWFAIGDAVFATTIRDPTDRWYSQYRFEHVEHRDGTTQNSVPKPFDVWYGQEHSRNMGHNYYVKTFLGEATETEP 461
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: A0A7S2HZR1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HZR1_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.330e-17
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    4 YRIVANEWDAFP---AHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGSE-GTPKPFQTWY-RVVKKYVMGDNYYVKTF 234
            YR++ NEWD FP   A  +     ++A+T R P DRWYSQYRFEH+EHRD ++    +PF  WY R V   ++G NYYVKTF
Sbjct:  132 YRVMFNEWDVFPPGAAGMVQMENVLYASTFRDPADRWYSQYRFEHLEHRDRTKLSEVRPFSDWYSRWVS--LLGLNYYVKTF 211
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BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Match: A0A7S3Y0B9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0B9_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 7.280e-8
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  106 YSQYRFEHVEHRDGSE-GTP-KPFQTWYRVVKKYVMGDNYYVKTFSGTENL 252
            +SQYRFEHVEHRDG++ G+P  PF+ W  + ++  +GD+YY+K F G ENL
Sbjct:    3 FSQYRFEHVEHRDGTKKGSPVMPFEKW--LPRQAGLGDHYYLKCFVGDENL 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26315.7187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FQI2_ECTSI5.470e-3872.41Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8S3_ECTSI4.410e-3770.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK39_ECTSI2.590e-2960.98WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KG32_9PHAE2.630e-2759.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CC08_9STRA1.330e-2660.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8W3_9STRA8.880e-2657.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4DA02_HETAK2.960e-2456.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TRT1_9STRA5.980e-2459.09Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2HZR1_9EUKA2.330e-1751.22Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3Y0B9_HETAK7.280e-854.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26315contigH-paniculata_contig26315:213..3161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D7FQI2
Hectar predicted targeting categoryother localisation
EggNOG OGs2DC45@1,2S5JB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size255
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26315.7187.1prot_H-paniculata_contig26315.7187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26315 213..3161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.7651474-CDS-H-paniculata_contig26315:212..2911622929787.7651474-CDS-H-paniculata_contig26315:212..291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26315 213..291 -
1691481010.7400107-CDS-H-paniculata_contig26315:212..2911691481010.7400107-CDS-H-paniculata_contig26315:212..291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26315 213..291 -
1622929787.7784493-CDS-H-paniculata_contig26315:1705..17951622929787.7784493-CDS-H-paniculata_contig26315:1705..1795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26315 1706..1795 -
1691481010.754303-CDS-H-paniculata_contig26315:1705..17951691481010.754303-CDS-H-paniculata_contig26315:1705..1795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26315 1706..1795 -
1622929787.7892034-CDS-H-paniculata_contig26315:3075..31611622929787.7892034-CDS-H-paniculata_contig26315:3075..3161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26315 3076..3161 -
1691481010.7638917-CDS-H-paniculata_contig26315:3075..31611691481010.7638917-CDS-H-paniculata_contig26315:3075..3161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26315 3076..3161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26315.7187.1

>prot_H-paniculata_contig26315.7187.1 ID=prot_H-paniculata_contig26315.7187.1|Name=mRNA_H-paniculata_contig26315.7187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
GYRIVANEWDAFPAHHLHFPGAVFATTMRHPVDRWYSQYRFEHVEHRDGS
EGTPKPFQTWYRVVKKYVMGDNYYVKTFSGTENLP
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mRNA from alignment at H-paniculata_contig26315:213..3161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26315.7187.1 ID=mRNA_H-paniculata_contig26315.7187.1|Name=mRNA_H-paniculata_contig26315.7187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2949bp|location=Sequence derived from alignment at H-paniculata_contig26315:213..3161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTATCGCATCGTTGCGAACGAGTGGGATGCGTTTCCAGCTCATCACCT
TCATTTTCCGGGGGCTGTTTTCGCAACAACTATGAGGTAAGCAAGGCTGA
TCAACATTGTTTCTTCGGATATGTGGCATGAGATTTTGACTAAAGAAAAA
AATTGAGCTGGCGAAGGGGGAATTGCCGAGTCGTTGTCTTCCACCCCCAT
GCTCTTTATATTTCATGCCTTTTATTTCATGAATAATTCTTTTGGAGGTC
TTGAAAACAAATTACGGTATAAATAATCCTGTTTTTTGGGGTTTTTTTTT
TTTTTGGGGGGGGGGGGGGGGGAGGGGGAGCGTTTTCTCGGCCCGTGACT
CGCACACACATGAAGGAGTTTTTCTTATTTGTTGTTGATGACGTGTAGAT
GACTAAGGCTTAAAAAATCAGCTCCCGCATAATCTCAACATGGTGGGAGA
GGAGTTATTATGTGGGCTTCAGATCTATACTTGAACTGACCGTGGCAAGG
CGACTTACGAATTAAGAATGTTTAGGGTGTATGTTTGTATGTCGTCCATG
TGAAAACCATCTCATGTTAATACCTGCAGTACACATGCGGGTGATACAGT
GCCAAATTTCTGCCCCTCCCACTCTCCCGTCCCCGTGACTTCCTTGTTTC
CCCCTTGTGACTCGTATCTTGGTGGGGAAAAAAACAGACTTGGATATAAA
TGACTTATGTGCAATTTCTTGCAACTTCCGAATGTAAGGGCCTCTACATC
TTTTTGTTTAATATTGATCATCCCTCTCTCTTCTTTCTTGACACCTCGAA
CGTCGCGTTATGATGTCATTTCCCCCAGTATACTTCGTCTATCTATATAT
CTATCTATATATCTATCTATATATCTATCTATATATATATCTATATATCT
ATCTATATATATATCTATACCCCCCCCCCCCCCTCCCATCAAACATGGAT
ATATTATTTCCATGACCGTGTTTCCCTCTTTTCGGACGATCTATCACATA
TGCTGTGTTTTATGGTGCCGTTTCGCCTATGCTCCATTTCTTGCACACGT
CGGAAAGATGAGATCAAAACAGAACAGCTATATTGGAGTTAGTGTGCCAC
TGAACAAAACGTTCTGTTCTAATGTGTCCATTTTTACTCGGCATGGGTGC
AGTGCATATGTCCTCCTGCGACCTGCGATAAATGCTGTTCCGTTTGCACG
CACCCAAAAACTCTGCGGCACTGAGACTGCTGTTTCTGTGCGACGTGTGA
AAAACGACGAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
AATTTCCCTCGAGTACGAAAAACCATCCCCAATCATTGGTGCACTTCCAA
CATTTTCCCGTGGCAGACATCCGGTGGATCGATGGTACAGCCAATACCGG
TTCGAGCATGTGGAGCATCGCGACGGGAGCGAAGGCACCCCCAAGCCCTT
CCAGACGTACGTATTTTAGGAAATAGGAACAGGTCGACCTTGATTAAACC
CAACGCTCAGGCTACTACCGTATGTGCATGCTGTTCCATTGTCTTAAAAG
ACCGTTACCGTACAGTGGAATAGTTATTGCTTGTACCAGTACTTTGGCAG
AGAGGTGATGTACCAATACTCGATAACTTTGAAATTGGCCCTGTGCAGCT
GCAAGAAAACCATCCAGTCTTTTCGAAGTTTATAATGAGGTATTGGAGAT
GTATGTCCTCAGTATTTAGGCAAATTTGATACTGGTGATACTGAACCATC
CCAGTAGCTTAATGGATACATACTGGCGCCTCAGTATTTTGATTCCCTTA
CTGGAGAAACTGTTATCCTACTATTTCCGAGGGTATATACCGTTGAAGTA
GCCCCGAAATGATACCAGGTAGACCTACCCTAGATTACAGAGGATAACAC
CCCCCCCCACCCCCGGTGATGACATTTTGACACCAAGAAGGTGGGGGTGG
TATCCTCCATATCCCCCGTGATAAGTAGTTTCGTTTGAGAAATTGGTAAT
AAACTAACACCGAAGGTAGTATTCGAGGGGGGGGGTTATGATATACTCCA
GCATTGGTGTTTGTTATCCCTTGTAATCTACGGTACTCTCGTATGGTAGA
TGTTGGGATCGATGTACAAAAGTGTCCACCAACTGTTGGACGTGTGCAAC
GGAGTCATGGTCGATATGTATGGTACCGACCCGCCCATGGGGAAGTGAGA
TTTTATTAATCCATGAGAACATTCGCCCTAAGAAATGGCGTTCACATGGC
GGCACAATACTAGTTCCCATTTTGAGTGAGGTGTTTGAGTCCCGAGCCCT
ATTGCTAGTTTCGTGTGAGCGGGTCCTCACTTTATTGCTATGACGAGGTA
AAAAGTGCTTCGAGTGTTGCGGTAAATACATGTGTACACCTGTTACGATC
AGAAGTCGGCCTGGGTCTGACGGGCAGCGCTTCTTCGCGTAAGGGACGTA
GTGGACGCATTCAGTGTCCGTACTACGTATACTACCTGTGGCGGCGACCT
GTGGAGGTTTAATGTAGCATATTTTGGTTTCGAGGCGCGCTTTTCTTGTG
TTGTGCCAATCTAAGACCCTCTCCCACATGTCATATATTCATGATATTGG
AATAATGGCAGTCGTATACCGAAATACACAGAGGATGTGTGTGTGGGTGG
GTGTGTGCGTGCGTGCGTGCGTGCATGTGTGTGCGCTTGATGGTTACTGA
CTGACACATCTAATGTTCCCCCTTGGTAAACTACCGTTTGAACATGGATT
GCTTTACAGGGTGTGTCTGTTGCAAGCAGTATCAAAGCGGCAGATAGGTA
TGCATTATGACTGCCTGCATTCATCGTCTGAAGCATTTTTTTTTAAATTC
TTTGCTTGGTGCTCGAACAGATGGTACAGAGTCGTGAAGAAATACGTCAT
GGGGGACAACTATTACGTGAAGACTTTCAGCGGGACGGAGAATTTGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig26315:213..3161-

>mRNA_H-paniculata_contig26315.7187.1 ID=mRNA_H-paniculata_contig26315.7187.1|Name=mRNA_H-paniculata_contig26315.7187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig26315:213..3161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTATCGCATCGTTGCGAACGAGTGGGATGCGTTTCCAGCTCATCACCT
TCATTTTCCGGGGGCTGTTTTCGCAACAACTATGAGGGTTATCGCATCGT
TGCGAACGAGTGGGATGCGTTTCCAGCTCATCACCTTCATTTTCCGGGGG
CTGTTTTCGCAACAACTATGAGACATCCGGTGGATCGATGGTACAGCCAA
TACCGGTTCGAGCATGTGGAGCATCGCGACGGGAGCGAAGGCACCCCCAA
GCCCTTCCAGACACATCCGGTGGATCGATGGTACAGCCAATACCGGTTCG
AGCATGTGGAGCATCGCGACGGGAGCGAAGGCACCCCCAAGCCCTTCCAG
ACATGGTACAGAGTCGTGAAGAAATACGTCATGGGGGACAACTATTACGT
GAAGACTTTCAGCGGGACGGAGAATTTGCCAATGGTACAGAGTCGTGAAG
AAATACGTCATGGGGGACAACTATTACGTGAAGACTTTCAGCGGGACGGA
GAATTTGCCA
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