mRNA_H-paniculata_contig26295.7178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26295.7178.1
Unique NamemRNA_H-paniculata_contig26295.7178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26295.7178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26295contigH-paniculata_contig26295:2577..3165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.8083782-CDS-H-paniculata_contig26295:2576..31641622929785.8083782-CDS-H-paniculata_contig26295:2576..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26295 2577..3164 +
1691481009.8143468-CDS-H-paniculata_contig26295:2576..31641691481009.8143468-CDS-H-paniculata_contig26295:2576..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26295 2577..3164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26295.7178.1prot_H-paniculata_contig26295.7178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26295 2577..3164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26295.7178.1

>prot_H-paniculata_contig26295.7178.1 ID=prot_H-paniculata_contig26295.7178.1|Name=mRNA_H-paniculata_contig26295.7178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
SEHKWCSNHNISLHNTSECRAQREQRNTSSNHGNVSNVRNSDSNNERGNG
DGDATNVGQANIAFVSEATMLVSVPAPTTCEPPATTTPYCSSSPPSRIVS
SFLAASAVDNELPVKFCMTSDCGASSHFIDNKLLNGVENRVDYYSVLTPP
AHIIVAGHNTLYGVGMGTLTVRVTDHPRGLRSTRMQAMLVPRLGHH
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mRNA from alignment at H-paniculata_contig26295:2577..3165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26295.7178.1 ID=mRNA_H-paniculata_contig26295.7178.1|Name=mRNA_H-paniculata_contig26295.7178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=589bp|location=Sequence derived from alignment at H-paniculata_contig26295:2577..3165+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGAACACAAGTGGTGTAGCAATCACAACATCTCTTTGCACAATACCTC
CGAGTGCCGTGCTCAACGAGAGCAGCGAAACACCAGCTCCAACCACGGGA
ACGTTAGCAATGTCCGGAACAGTGACAGCAACAATGAACGCGGCAACGGC
GATGGAGACGCTACCAACGTTGGCCAAGCCAACATAGCATTCGTCTCCGA
AGCTACAATGTTGGTCTCCGTCCCCGCTCCAACGACCTGTGAGCCACCCG
CTACCACTACGCCCTACTGCTCGTCATCACCTCCGTCTCGCATCGTCTCC
TCATTCCTGGCAGCCTCAGCTGTCGATAACGAGTTACCTGTCAAGTTCTG
CATGACGTCCGACTGCGGCGCCTCGTCTCACTTCATTGATAACAAGCTTC
TCAACGGTGTCGAGAATCGAGTCGACTACTATTCTGTGCTAACTCCCCCA
GCCCACATTATTGTCGCCGGCCACAACACCCTCTACGGCGTTGGCATGGG
CACCCTGACTGTTCGTGTCACTGACCATCCCAGGGGCCTCCGCTCCACCC
GGATGCAAGCCATGCTGGTACCCAGGCTTGGTCATCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig26295:2577..3165+

>mRNA_H-paniculata_contig26295.7178.1 ID=mRNA_H-paniculata_contig26295.7178.1|Name=mRNA_H-paniculata_contig26295.7178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig26295:2577..3165+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGAACACAAGTGGTGTAGCAATCACAACATCTCTTTGCACAATACCTC
CGAGTGCCGTGCTCAACGAGAGCAGCGAAACACCAGCTCCAACCACGGGA
ACGTTAGCAATGTCCGGAACAGTGACAGCAACAATGAACGCGGCAACGGC
GATGGAGACGCTACCAACGTTGGCCAAGCCAACATAGCATTCGTCTCCGA
AGCTACAATGTTGGTCTCCGTCCCCGCTCCAACGACCTGTGAGCCACCCG
CTACCACTACGCCCTACTGCTCGTCATCACCTCCGTCTCGCATCGTCTCC
TCATTCCTGGCAGCCTCAGCTGTCGATAACGAGTTACCTGTCAAGTTCTG
CATGACGTCCGACTGCGGCGCCTCGTCTCACTTCATTGATAACAAGCTTC
TCAACGGTGTCGAGAATCGAGTCGACTACTATTCTGTGCTAACTCCCCCA
GCCCACATTATTGTCGCCGGCCACAACACCCTCTACGGCGTTGGCATGGG
CACCCTGACTGTTCGTGTCACTGACCATCCCAGGGGCCTCCGCTCCACCC
GGATGCAAGCCATGCTGGTACCCAGGCTTGGTCATCACTCGGAACACAAG
TGGTGTAGCAATCACAACATCTCTTTGCACAATACCTCCGAGTGCCGTGC
TCAACGAGAGCAGCGAAACACCAGCTCCAACCACGGGAACGTTAGCAATG
TCCGGAACAGTGACAGCAACAATGAACGCGGCAACGGCGATGGAGACGCT
ACCAACGTTGGCCAAGCCAACATAGCATTCGTCTCCGAAGCTACAATGTT
GGTCTCCGTCCCCGCTCCAACGACCTGTGAGCCACCCGCTACCACTACGC
CCTACTGCTCGTCATCACCTCCGTCTCGCATCGTCTCCTCATTCCTGGCA
GCCTCAGCTGTCGATAACGAGTTACCTGTCAAGTTCTGCATGACGTCCGA
CTGCGGCGCCTCGTCTCACTTCATTGATAACAAGCTTCTCAACGGTGTCG
AGAATCGAGTCGACTACTATTCTGTGCTAACTCCCCCAGCCCACATTATT
GTCGCCGGCCACAACACCCTCTACGGCGTTGGCATGGGCACCCTGACTGT
TCGTGTCACTGACCATCCCAGGGGCCTCCGCTCCACCCGGATGCAAGCCA
TGCTGGTACCCAGGCTTGGTCATCAC
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