mRNA_H-paniculata_contig26280.7175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A6D2KR48_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KR48_9BRAS) HSP 1 Score: 67.8 bits (164), Expect = 1.880e-10 Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRME---IWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
+ C RCGK+GH C L + +E +E + L + + ++ + E IW G + HMT + + E H VRL NG+RLP+EG G + + +V++ V ++P L+N+LLS+G+L +
Sbjct: 249 INCFRCGKQGHYQFECTS-------LEKGVNYVEFDEEEELLLMA-----HTDISKAEGKGIWFLDSGCSNHMTGEKSWFIELDEGFKHSVRLGNGSRLPVEGKGKVRFEVEGILQVVSDVYYVPNLTNNLLSVGQLQE 375
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: UPI000C9D663F (uncharacterized protein LOC111782798 n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D663F) HSP 1 Score: 67.0 bits (162), Expect = 1.990e-10 Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
+ C RCGK+GH CP + E AE + E EL L + S +V R IW G + HMT + + + H VRL N ++L +E G + + + +T V ++P L+N+LLS+G+L +
Sbjct: 153 INCFRCGKQGHYQFECPGLEKEATNYAEFDEEEEL--LLMTYTKKS------KVEREGIWFLDFGCSNHMTEEKTWFLSLTKVSKHSVRLGNNSKLAVEERGSVRFEVEGITQTVTNVYYVPNLTNNLLSIGQLQE 280
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: UPI000CED08D7 (uncharacterized protein LOC18010455 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED08D7) HSP 1 Score: 64.3 bits (155), Expect = 2.800e-9 Identity = 43/139 (30.94%), Postives = 66/139 (47.48%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRME---IWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
+ C C K+GH C + A+ E + EE L ++ + EV + E +W G + HMT + + E H VRL N RL +EG G + + +V+T V +IP LSN+LLS+G+L +
Sbjct: 338 ITCFNCEKKGHYSFECTEKANY--------VEFDEEEELLLMA-------HTEVSKAEGKGVWFLDSGCSNHMTGEKSWFTELNEDFKHSVRLGNNTRLAVEGKGKIRFEAEGIVQVITDVYYIPNLSNNLLSIGQLQE 461
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A1J3EAM3_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3EAM3_NOCCA) HSP 1 Score: 63.9 bits (154), Expect = 3.490e-9 Identity = 39/140 (27.86%), Postives = 68/140 (48.57%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFGRE 420
+ C RC K GH + CP + +E +E L + + +EV +W G + HMT N ++ + + H VRL N +R+ + G G + + ++++ V F+P L+N+LLS+G+L + G E
Sbjct: 253 IECFRCHKLGHFQYECPTTE-------KRANYVEFDEGEPLLLMAHTEITEKEV--KGLWFLDSGCSNHMTGNKEWFMELDDNFRHGVRLGNSSRMEVMGKGDVKFEVEGVTQIVSDVFFLPDLTNNLLSIGQLQEKGVE 383
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A392P3Y6_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P3Y6_9FABA) HSP 1 Score: 61.2 bits (147), Expect = 1.480e-8 Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQE-CNGHVRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKL 402
V C +C K GH + CP D +A AE E E E+ L S E L +W G + HMT ++ FD+ + V+L N +++ + G G + L V+T V ++P LSN+LLS+G+L
Sbjct: 80 VECFKCHKLGHYRNECP---DWEANYAEHEEEDEM--LLMDYSNIKEEL------AEGVWYIDSGCSNHMTETKEWFFDFDDKFRESVKLGNDSKMAVMGRGNVKLSIEGKIHVITNVYYLPGLSNNLLSVGQL 202
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A2K3N9S3_TRIPR (Copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3N9S3_TRIPR) HSP 1 Score: 60.5 bits (145), Expect = 6.480e-8 Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = 1
Query: 1 NVYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQE-CNGHVRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFG 414
++ C +C K GH + CP D +A AE E E+ L A S E +W G + HMT ++ FD+ + V+L N +++ + G G + L V+T V ++P LSN+LLS+G+L G
Sbjct: 242 SIECFKCHKLGHYRNECP---DWEANYAEHREEEEM--LLMAYSYTKEDF------IKGMWYIDSGCSNHMTGTKEWFFDFDDKFRESVKLGNDSKMTVMGRGNVKLNMDGKIHVITNVYYLPGLSNNLLSVGQLQQRG 369
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A1J3FTR1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FTR1_NOCCA) HSP 1 Score: 60.5 bits (145), Expect = 6.500e-8 Identity = 43/142 (30.28%), Postives = 64/142 (45.07%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVA------DEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
+ C C K+GH C + A +ED L T++ KA G +W G + HMT + + E H VRL N +RL +EG G + + +V+T V +IP LSN+LLS+G+L +
Sbjct: 76 ITCFNCEKKGHYSFECTEKANYVEFDEEDELLLMAHTDMS-----KAEGKG-------------VWFLDSGCSNHMTGEKSWFTELNEDFKHLVRLGNNSRLVVEGKGNIRFEAEGIIQVITDVYYIPNLSNNLLSIGQLQE 199
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: UPI000B8CF6DD (uncharacterized protein LOC110823675 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF6DD) HSP 1 Score: 60.1 bits (144), Expect = 7.540e-8 Identity = 42/144 (29.17%), Postives = 64/144 (44.44%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVADEDACLAETE------TEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQE-CNGHVRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFG 414
+ C C + GH C Q +A ++ E TEI E++ L SE V +W+ G T HM N + G VRL NG I+G G + ++ + + +T V F+P LS +LLS+ ++ D G
Sbjct: 221 IQCNFCKRVGHKEKFCRQKQKLEAAQSKQELQHINITEISSEQSNTILVTSSE----LTVEDDSLWVVDSGCTSHMCKNEAMFVSLDKSATGQVRLENGMLETIKGKGNIAIETKEGKKFITDVNFVPTLSQNLLSVNQMTDQG 360
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 58.9 bits (141), Expect = 2.080e-7 Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = 1
Query: 4 VYCGRCGKRGHDLHACPQVA-DEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEI---WICGKGATKHMTHNSDFLFDYQECNG-HVRLANGNRLPIEGVGMLFLQFRFDPE----VLTQVAFIPLLSNHLLSLG 396
+ C C K GH + C + DED + E + E +A + +E +E +E+ +E+ WI GA++HMTH S+++ + Q HV L +G + + G G +++Q D + VL V ++P L+ +L S+G
Sbjct: 227 IECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNESNTEA-AFSAEVIE-KEILNLEVKDVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR) HSP 1 Score: 57.4 bits (137), Expect = 7.540e-7 Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 1 NVYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
++ C +C + GH CPQ ++ AE + + EE + E E E W + HMT ++ + E H V+L NG RL ++G+G + + +++T+V F+P L+++L+S+G+L +
Sbjct: 257 SIECYKCQQMGHYQFECPQW-NKGVNYAEFD---DTEELVLMAKEEKEDQETTECNGY--WFLDSACSNHMTGTKEWFTELDENINHSVKLGNGLRLNVQGIGSIKFEVNGIIQIITKVYFVPQLTSNLISIGQLQE 387 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26280.7175.1 >prot_H-paniculata_contig26280.7175.1 ID=prot_H-paniculata_contig26280.7175.1|Name=mRNA_H-paniculata_contig26280.7175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp NVYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLback to top mRNA from alignment at H-paniculata_contig26280:575..1078+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26280.7175.1 ID=mRNA_H-paniculata_contig26280.7175.1|Name=mRNA_H-paniculata_contig26280.7175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=504bp|location=Sequence derived from alignment at H-paniculata_contig26280:575..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26280:575..1078+ >mRNA_H-paniculata_contig26280.7175.1 ID=mRNA_H-paniculata_contig26280.7175.1|Name=mRNA_H-paniculata_contig26280.7175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig26280:575..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |