mRNA_H-paniculata_contig26280.7175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26280.7175.1
Unique NamemRNA_H-paniculata_contig26280.7175.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A6D2KR48_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KR48_9BRAS)

HSP 1 Score: 67.8 bits (164), Expect = 1.880e-10
Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRME---IWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
            + C RCGK+GH    C         L +    +E +E  + L +      + ++ + E   IW    G + HMT    +  +  E   H VRL NG+RLP+EG G +  +     +V++ V ++P L+N+LLS+G+L +
Sbjct:  249 INCFRCGKQGHYQFECTS-------LEKGVNYVEFDEEEELLLMA-----HTDISKAEGKGIWFLDSGCSNHMTGEKSWFIELDEGFKHSVRLGNGSRLPVEGKGKVRFEVEGILQVVSDVYYVPNLTNNLLSVGQLQE 375          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: UPI000C9D663F (uncharacterized protein LOC111782798 n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D663F)

HSP 1 Score: 67.0 bits (162), Expect = 1.990e-10
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
            + C RCGK+GH    CP +  E    AE + E EL   L   +  S      +V R  IW    G + HMT    +     + + H VRL N ++L +E  G +  +     + +T V ++P L+N+LLS+G+L +
Sbjct:  153 INCFRCGKQGHYQFECPGLEKEATNYAEFDEEEEL--LLMTYTKKS------KVEREGIWFLDFGCSNHMTEEKTWFLSLTKVSKHSVRLGNNSKLAVEERGSVRFEVEGITQTVTNVYYVPNLTNNLLSIGQLQE 280          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: UPI000CED08D7 (uncharacterized protein LOC18010455 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED08D7)

HSP 1 Score: 64.3 bits (155), Expect = 2.800e-9
Identity = 43/139 (30.94%), Postives = 66/139 (47.48%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRME---IWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
            + C  C K+GH    C + A+          E + EE L  ++       + EV + E   +W    G + HMT    +  +  E   H VRL N  RL +EG G +  +     +V+T V +IP LSN+LLS+G+L +
Sbjct:  338 ITCFNCEKKGHYSFECTEKANY--------VEFDEEEELLLMA-------HTEVSKAEGKGVWFLDSGCSNHMTGEKSWFTELNEDFKHSVRLGNNTRLAVEGKGKIRFEAEGIVQVITDVYYIPNLSNNLLSIGQLQE 461          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A1J3EAM3_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3EAM3_NOCCA)

HSP 1 Score: 63.9 bits (154), Expect = 3.490e-9
Identity = 39/140 (27.86%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFGRE 420
            + C RC K GH  + CP          +    +E +E    L +    +  +EV    +W    G + HMT N ++  +  +   H VRL N +R+ + G G +  +     ++++ V F+P L+N+LLS+G+L + G E
Sbjct:  253 IECFRCHKLGHFQYECPTTE-------KRANYVEFDEGEPLLLMAHTEITEKEV--KGLWFLDSGCSNHMTGNKEWFMELDDNFRHGVRLGNSSRMEVMGKGDVKFEVEGVTQIVSDVFFLPDLTNNLLSIGQLQEKGVE 383          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A392P3Y6_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P3Y6_9FABA)

HSP 1 Score: 61.2 bits (147), Expect = 1.480e-8
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQE-CNGHVRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKL 402
            V C +C K GH  + CP   D +A  AE E E E+   L   S   E L         +W    G + HMT   ++ FD+ +     V+L N +++ + G G + L       V+T V ++P LSN+LLS+G+L
Sbjct:   80 VECFKCHKLGHYRNECP---DWEANYAEHEEEDEM--LLMDYSNIKEEL------AEGVWYIDSGCSNHMTETKEWFFDFDDKFRESVKLGNDSKMAVMGRGNVKLSIEGKIHVITNVYYLPGLSNNLLSVGQL 202          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A2K3N9S3_TRIPR (Copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3N9S3_TRIPR)

HSP 1 Score: 60.5 bits (145), Expect = 6.480e-8
Identity = 43/139 (30.94%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 NVYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQE-CNGHVRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFG 414
            ++ C +C K GH  + CP   D +A  AE   E E+   L A S   E           +W    G + HMT   ++ FD+ +     V+L N +++ + G G + L       V+T V ++P LSN+LLS+G+L   G
Sbjct:  242 SIECFKCHKLGHYRNECP---DWEANYAEHREEEEM--LLMAYSYTKEDF------IKGMWYIDSGCSNHMTGTKEWFFDFDDKFRESVKLGNDSKMTVMGRGNVKLNMDGKIHVITNVYYLPGLSNNLLSVGQLQQRG 369          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A1J3FTR1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FTR1_NOCCA)

HSP 1 Score: 60.5 bits (145), Expect = 6.500e-8
Identity = 43/142 (30.28%), Postives = 64/142 (45.07%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVA------DEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
            + C  C K+GH    C + A      +ED  L    T++      KA   G             +W    G + HMT    +  +  E   H VRL N +RL +EG G +  +     +V+T V +IP LSN+LLS+G+L +
Sbjct:   76 ITCFNCEKKGHYSFECTEKANYVEFDEEDELLLMAHTDMS-----KAEGKG-------------VWFLDSGCSNHMTGEKSWFTELNEDFKHLVRLGNNSRLVVEGKGNIRFEAEGIIQVITDVYYIPNLSNNLLSIGQLQE 199          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: UPI000B8CF6DD (uncharacterized protein LOC110823675 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF6DD)

HSP 1 Score: 60.1 bits (144), Expect = 7.540e-8
Identity = 42/144 (29.17%), Postives = 64/144 (44.44%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVADEDACLAETE------TEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQE-CNGHVRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFG 414
            + C  C + GH    C Q    +A  ++ E      TEI  E++   L   SE      V    +W+   G T HM  N        +   G VRL NG    I+G G + ++ +   + +T V F+P LS +LLS+ ++ D G
Sbjct:  221 IQCNFCKRVGHKEKFCRQKQKLEAAQSKQELQHINITEISSEQSNTILVTSSE----LTVEDDSLWVVDSGCTSHMCKNEAMFVSLDKSATGQVRLENGMLETIKGKGNIAIETKEGKKFITDVNFVPTLSQNLLSVNQMTDQG 360          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 58.9 bits (141), Expect = 2.080e-7
Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    4 VYCGRCGKRGHDLHACPQVA-DEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEI---WICGKGATKHMTHNSDFLFDYQECNG-HVRLANGNRLPIEGVGMLFLQFRFDPE----VLTQVAFIPLLSNHLLSLG 396
            + C  C K GH +  C +   DED  +   E +   E   +A +  +E +E +E+  +E+   WI   GA++HMTH S+++ + Q     HV L +G +  + G G +++Q   D +    VL  V ++P L+ +L S+G
Sbjct:  227 IECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNESNTEA-AFSAEVIE-KEILNLEVKDVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 57.4 bits (137), Expect = 7.540e-7
Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 1
Query:    1 NVYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGLEYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGH-VRLANGNRLPIEGVGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLAD 408
            ++ C +C + GH    CPQ  ++    AE +   + EE +       E  E  E      W      + HMT   ++  +  E   H V+L NG RL ++G+G +  +     +++T+V F+P L+++L+S+G+L +
Sbjct:  257 SIECYKCQQMGHYQFECPQW-NKGVNYAEFD---DTEELVLMAKEEKEDQETTECNGY--WFLDSACSNHMTGTKEWFTELDENINHSVKLGNGLRLNVQGIGSIKFEVNGIIQIITKVYFVPQLTSNLISIGQLQE 387          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26280.7175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2KR48_9BRAS1.880e-1030.22Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI000C9D663F1.990e-1031.62uncharacterized protein LOC111782798 n=1 Tax=Cucur... [more]
UPI000CED08D72.800e-930.94uncharacterized protein LOC18010455 n=1 Tax=Eutrem... [more]
A0A1J3EAM3_NOCCA3.490e-927.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A392P3Y6_9FABA1.480e-832.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3N9S3_TRIPR6.480e-830.94Copia-type polyprotein n=2 Tax=Trifolium TaxID=389... [more]
A0A1J3FTR1_NOCCA6.500e-830.28Retrovirus-related Pol polyprotein from transposon... [more]
UPI000B8CF6DD7.540e-829.17uncharacterized protein LOC110823675 n=1 Tax=Caric... [more]
A0A151ITN2_9HYME2.080e-730.00Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A5N6M7D6_9ASTR7.540e-727.01Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26280contigH-paniculata_contig26280:575..1078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26280.7175.1prot_H-paniculata_contig26280.7175.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26280 575..1078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.6036713-CDS-H-paniculata_contig26280:574..6971622929785.6036713-CDS-H-paniculata_contig26280:574..697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26280 575..697 +
1691481009.7414174-CDS-H-paniculata_contig26280:574..6971691481009.7414174-CDS-H-paniculata_contig26280:574..697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26280 575..697 +
1622929785.6187983-CDS-H-paniculata_contig26280:766..9851622929785.6187983-CDS-H-paniculata_contig26280:766..985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26280 767..985 +
1691481009.7547262-CDS-H-paniculata_contig26280:766..9851691481009.7547262-CDS-H-paniculata_contig26280:766..985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26280 767..985 +
1622929785.630918-CDS-H-paniculata_contig26280:997..10781622929785.630918-CDS-H-paniculata_contig26280:997..1078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26280 998..1078 +
1691481009.7658153-CDS-H-paniculata_contig26280:997..10781691481009.7658153-CDS-H-paniculata_contig26280:997..1078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26280 998..1078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26280.7175.1

>prot_H-paniculata_contig26280.7175.1 ID=prot_H-paniculata_contig26280.7175.1|Name=mRNA_H-paniculata_contig26280.7175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
NVYCGRCGKRGHDLHACPQVADEDACLAETETEIELEEALKALSVGSEGL
EYREVGRMEIWICGKGATKHMTHNSDFLFDYQECNGHVRLANGNRLPIEG
VGMLFLQFRFDPEVLTQVAFIPLLSNHLLSLGKLADFGRE*
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mRNA from alignment at H-paniculata_contig26280:575..1078+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26280.7175.1 ID=mRNA_H-paniculata_contig26280.7175.1|Name=mRNA_H-paniculata_contig26280.7175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=504bp|location=Sequence derived from alignment at H-paniculata_contig26280:575..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTGTACTGTGGGCGATGTGGTAAGCGTGGTCACGACTTGCACGCGTG CCCCCAGGTCGCCGATGAAGATGCTTGTTTGGCTGAAACTGAAACGGAGA TTGAACTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGACTAGTTCATC GCGGCATACATCACGTCGACTTCCACCACAGGCAAGGAAGAGGCTTTGTC TGTGGGCTCTGAGGGGCTAGAATATCGTGAGGTGGGGAGGATGGAGATCT GGATTTGTGGTAAAGGTGCAACGAAACACATGACCCATAATTCAGATTTT CTTTTTGATTACCAGGAATGTAATGGGCATGTACGCCTTGCAAATGGTAA TCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTG ACCCCGAGGTTGTGTAGATGAAGTTAACTCAGGTTGCGTTCATACCACTC CTCAGTAATCACCTCCTATCTCTCGGGAAATTGGCGGACTTTGGTCGTGA ATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26280:575..1078+

>mRNA_H-paniculata_contig26280.7175.1 ID=mRNA_H-paniculata_contig26280.7175.1|Name=mRNA_H-paniculata_contig26280.7175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig26280:575..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTGTACTGTGGGCGATGTGGTAAGCGTGGTCACGACTTGCACGCGTG
CCCCCAGGTCGCCGATGAAGATGCTTGTTTGGCTGAAACTGAAACGGAGA
TTGAACTTGAAGAGGCGCTCAAGAACGTGTACTGTGGGCGATGTGGTAAG
CGTGGTCACGACTTGCACGCGTGCCCCCAGGTCGCCGATGAAGATGCTTG
TTTGGCTGAAACTGAAACGGAGATTGAACTTGAAGAGGCGCTCAAGGCTT
TGTCTGTGGGCTCTGAGGGGCTAGAATATCGTGAGGTGGGGAGGATGGAG
ATCTGGATTTGTGGTAAAGGTGCAACGAAACACATGACCCATAATTCAGA
TTTTCTTTTTGATTACCAGGAATGTAATGGGCATGTACGCCTTGCAAATG
GTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGA
TTTGACCCCGAGGTTGCTTTGTCTGTGGGCTCTGAGGGGCTAGAATATCG
TGAGGTGGGGAGGATGGAGATCTGGATTTGTGGTAAAGGTGCAACGAAAC
ACATGACCCATAATTCAGATTTTCTTTTTGATTACCAGGAATGTAATGGG
CATGTACGCCTTGCAAATGGTAATCGTCTCCCGATCGAAGGAGTTGGCAT
GCTGTTCCTTCAATTTCGATTTGACCCCGAGGTTTTAACTCAGGTTGCGT
TCATACCACTCCTCAGTAATCACCTCCTATCTCTCGGGAAATTGGCGGAC
TTTGGTCGTGAATAGTTAACTCAGGTTGCGTTCATACCACTCCTCAGTAA
TCACCTCCTATCTCTCGGGAAATTGGCGGACTTTGGTCGTGAATAG
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