mRNA_H-paniculata_contig2628.7174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2628.7174.1
Unique NamemRNA_H-paniculata_contig2628.7174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2628.7174.1 vs. uniprot
Match: D8LG86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG86_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 7.070e-10
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 2 
Query:   35 RIAIEQRKTQEAERMIEQMEEDEDALIERLKKTQEEQRKAYELLQESLET 184
            RI  E   TQEAERMIE+ME+DED LIERLKK Q+EQRKAYELL ESLE+
Sbjct:  212 RIEAEXXXTQEAERMIEKMEQDEDVLIERLKKVQDEQRKAYELLHESLES 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2628.7174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG86_ECTSI7.070e-1076.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2628contigH-paniculata_contig2628:16501..17432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_004140.1
Exons2
Model size195
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2628.7174.1prot_H-paniculata_contig2628.7174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2628 16509..16619 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.4627466-UTR-H-paniculata_contig2628:16500..165081622929785.4627466-UTR-H-paniculata_contig2628:16500..16508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2628 16501..16508 -
1691481009.6916246-UTR-H-paniculata_contig2628:16500..165081691481009.6916246-UTR-H-paniculata_contig2628:16500..16508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2628 16501..16508 -
1622929785.54696-UTR-H-paniculata_contig2628:16619..166371622929785.54696-UTR-H-paniculata_contig2628:16619..16637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2628 16620..16637 -
1691481009.7219868-UTR-H-paniculata_contig2628:16619..166371691481009.7219868-UTR-H-paniculata_contig2628:16619..16637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2628 16620..16637 -
1622929785.560941-UTR-H-paniculata_contig2628:17374..174321622929785.560941-UTR-H-paniculata_contig2628:17374..17432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2628 17375..17432 -
1691481009.7320642-UTR-H-paniculata_contig2628:17374..174321691481009.7320642-UTR-H-paniculata_contig2628:17374..17432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2628 17375..17432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.507708-CDS-H-paniculata_contig2628:16508..166191622929785.507708-CDS-H-paniculata_contig2628:16508..16619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2628 16509..16619 -
1691481009.7058418-CDS-H-paniculata_contig2628:16508..166191691481009.7058418-CDS-H-paniculata_contig2628:16508..16619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2628 16509..16619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2628.7174.1

>prot_H-paniculata_contig2628.7174.1 ID=prot_H-paniculata_contig2628.7174.1|Name=mRNA_H-paniculata_contig2628.7174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MIEQMEEDEDALIERLKKTQEEQRKAYELLQESLET*
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mRNA from alignment at H-paniculata_contig2628:16501..17432-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2628.7174.1 ID=mRNA_H-paniculata_contig2628.7174.1|Name=mRNA_H-paniculata_contig2628.7174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=932bp|location=Sequence derived from alignment at H-paniculata_contig2628:16501..17432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGAGGAAAAGCAGCAGGCAGAGTTGAGACGACGCATTGCTATCGAAC
AGCGAAAGGTGATACCTATGTTTCAGTTTCTCGGGAGAATTCGGTGCATA
AGAGATTCAGCTATTTCTATATGAGAGAGATAGAGCATACTCTTGGTGCG
GCGTATAATGGCAAGGAGAGGGAGAATATTGTGAGATTGCGGACTCAACC
ACCCCTGTTTAGACACCTAAGTAATGGAAGTATTTGGTAAAACAAAACAC
CGTTTAGCTTGTGCTAACAAACCAGTGGCGTTGGGTGTGGATGTCGCGAA
CACCAACTATGCGGTTCGCATCAGCCATCCGCGGCGGGTAAAGCCAACAA
ATCGCCACTGCCATATAAGAAGCATGCGGATTCTTCATTCTCCGGTGAAC
CATTAGAGTACCGAGTTCCGTGGACGAGAAGTTTTCTACCCCCCGAACAA
ATACGAACGAAGCATTAGCAACTAGATCTATATGAATGGTTACTCTAAAG
ATGGTCACCAGATGGTTGTATTCGCAGCGAACAGTCACAAATGTAGATCC
TGCTTACTTTCCTGATGGTACTGTACAGATGAATACTCCATCTTCCCGAG
CGTTTCGAGGCTCTATGGTATATCGAGTACACTGCATATTATTCACGTCA
CATCAACATCTTCCCTAACTCAAATAAATTCAGAGTTCATTCTAGATTTC
TCGTATTTATTCATGTGTTTTCCTTGTATTTGTCGGGGGCGTGAAACGTT
CCAACAAGCACACTCGATCCGTCCAAATTATACTTTGGCTTTTAGACACA
GGAGGCCGAACGCATGATTGAACAAATGGAGGAGGATGAGGACGCTTTGA
TCGAACGGCTCAAGAAGACACAGGAAGAGCAGCGCAAAGCGTACGAGCTA
CTCCAGGAGTCCCTCGAGACTTGAATTTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2628:16501..17432-

>mRNA_H-paniculata_contig2628.7174.1 ID=mRNA_H-paniculata_contig2628.7174.1|Name=mRNA_H-paniculata_contig2628.7174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig2628:16501..17432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAACAAATGGAGGAGGATGAGGACGCTTTGATCGAACGGCTCAA
GAAGACACAGGAAGAGCAGCGCAAAGCGTACGAGCTACTCCAGGAGTCCC
TCGAGACTTGAATGATTGAACAAATGGAGGAGGATGAGGACGCTTTGATC
GAACGGCTCAAGAAGACACAGGAAGAGCAGCGCAAAGCGTACGAGCTACT
CCAGGAGTCCCTCGAGACTTGA
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