mRNA_H-paniculata_contig2623.7167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: D8LIG9_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG9_ECTSI) HSP 1 Score: 783 bits (2022), Expect = 3.700e-274 Identity = 446/701 (63.62%), Postives = 495/701 (70.61%), Query Frame = 1
Query: 508 KSLRRRLAGWAGIEDRPPLGQESWWFPDDRRSSHH------------SRGSDSDVALSLSRCNSDSTHSGDXXXXXXREPQRTQPTI-----------------SRKRDWFKVLLAARNLATVVYAVSYTTSLPVLPFMANRLIFPRESTGPGDAGSEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAMIAWAGDSADAILVLSTVTMIFSAIVVEFTFVDTRPKGFRSHRMRDLVGEYLKEGARDLAEV-----------GKKMSGVDLAEYFNGGREREMPPSVALSPLTSTSTGTGSSGIRESSFRSLGGDLXXXXXGGAGAPVGGAGNY-GLRHRNLANGRGGRLLSQVGRD-------GEGMPNGSAAGVGTDVPAVIGEGDXXXXXXXXXXXXXXXXARRRPKLFSS-MSTGALVGVFKGMMTERLIMVTFVLQAIRPAQDLAPLVSLKFSGGASVLAGITSSRSLCRVLVPMTPLIPWLVRLAGGSSSEGATARMSGDRAVAAFMCVLMAGLVAAVPAVGSLQDLHHLMFFKGLCYIVRESTAGAVMARAAGTASVGAFFGWQHCIKGVQGTISHFLTGWLSGYSIATPYYVVAICDLLYAFTYLYI 2463
+SLRRR+A WAG EDRPP+ WFP + SD+ S RC+S + G+ SRKRDWFKVLLAARNLAT VYAVSYTT++PVLPFMANRLI+PR G GD GSEGV EAWRGMAYGLVMSGYYLTKMISAP IG+LSDR+GRRQALVVTLLGGALSF VTK+WGQYSIHGLI+CRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPA+IAWAGDSADAIL ++T+TMI SA +VE TFVDTRP+G R+ RM +V +YL EGA +LAEV GKK+SGV+LAEYFNGGRER+ P G+R+SS + GG + +GG+G GLRHRN+ G +G D G G +G A G DVP G A K+ + MS ALVGVFKGMM ERL++VTFVLQA+RPAQDLAPLV+LKFSGGASVLAGITSSRSLCRVLVPMTPLIPWLVRLAGGSSS GA A+M GDRAVAAFMCVLMAGLVA VPAVG+L++LHHLM FKGLCYIVRESTAGAVMARAAGTASVGAFFGWQHCIKG+QGT SHFLTGWLSGYSI+ PYYVV ICDLLYAFTYLYI
Sbjct: 19 ESLRRRIASWAGQEDRPPVD----WFPTGHXXXXXXXXXXXXXXXXXADSSDTASMSSRGRCDSGGSTPGESSGSFGEGAXXXXXXXXXXXXXXXXXXXXXXKRSRKRDWFKVLLAARNLATCVYAVSYTTTMPVLPFMANRLIYPRGPDGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIVEITFVDTRPEGCRTQRMSRVVSDYLLEGASNLAEVAIEXXXXXXEVGKKVSGVNLAEYFNGGRERDTPSLSLPXXXXXXXXXXXXXGLRQSSGTAAGGVVD----------LGGSGXXEGLRHRNV----GXXXXXXIGVDAQTNGFGGRGAADGGA-GARLDVPVEASAGVCGVGELPAAGGAKGKGAGEGRKILAEGMSASALVGVFKGMMKERLVLVTFVLQAVRPAQDLAPLVALKFSGGASVLAGITSSRSLCRVLVPMTPLIPWLVRLAGGSSSAGAAAKMGGDRAVAAFMCVLMAGLVACVPAVGTLRELHHLMAFKGLCYIVRESTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSHFLTGWLSGYSISLPYYVVGICDLLYAFTYLYI 700
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A0A835YWB9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB9_9STRA) HSP 1 Score: 215 bits (548), Expect = 1.730e-60 Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query: 733 SRKRDWFKVLLAARNLATVVYAVSYTTSLPVLPFMANRLIFPRESTGPGDAG------SEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAMIAWAGDSADAILVLSTVTMIFSAIVV 1326
S ++W V+ + RN+ T+VYA+SYT S+PVLPFMA R ++ G G S GV EAWRG+ YG VMSGYY TKMI+AP IG+LSDRVGR+ LVVT LG ++F +T + G++S+HGL+LCRLL+GCFAANGALM AYIRD+VP E Q+SAF+QHSA+WG AY+ A ++A + LVL+ V M +A++V
Sbjct: 65 SSAKEWAAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLAALREDPVRCLVLAAVCMALAALLV 268
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A0A835YM00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM00_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.260e-45 Identity = 96/195 (49.23%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 1879 LVGVFKGMMTERLIMVTFVLQAIRPAQDLAPLVSLKFSGGASVLAGITSSRSLCRVLVPMTPLIPWLVRLAGGSSSEGATARM-SGDRAVAAFMCVLMAGLVAAVPAVGSLQDLHHLMFFKGLCYIVRESTAGAVMARAAGTASVGAFFGWQHCIKGVQGTISHFLTGWLSGYSIATPYYVVAICDLLYAFTYLY 2460
+V VF+ M+ ERL++ F LQ IRPAQDLAPLV+ KF GA+ +A ITS RS R+L+P+TP+IP L GG + + T + GDR VAA MCV MA L A VP +L L +M KGL +++EST A+M+ A +VGAFFGWQH +KG+ G SH +TG L PY+ A CDLLYA Y++
Sbjct: 1 MVRVFRSMLQERLVLCIFALQVIRPAQDLAPLVTSKFGAGAAFVASITSVRSTFRMLLPLTPVIPMLHAALGGGTRDPKTGEVVGGDRPVAAVMCVAMALLGALVPLCPNLVVLQVVMAAKGLANVIKESTVSAIMSSLASHGNVGAFFGWQHFMKGLAGVTSHMVTGLLVSRGPEHPYFATAACDLLYALIYVF 195
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A0A4Y5Z9U7_9GAMM (TCR/Tet family MFS transporter n=1 Tax=Luteibacter pinisoli TaxID=2589080 RepID=A0A4Y5Z9U7_9GAMM) HSP 1 Score: 80.5 bits (197), Expect = 2.700e-12 Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 1
Query: 754 KVLLAARNLATVVYAVSYTTSLPVLPFMANRLIFPRESTGPGDAGSEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAP 1242
K +LAA + A+ +LPV+P + GD G GVD WR +G+ + Y L + + AP +G LSDR+GRR L+V+LLG AL++ + Y L+ R L G F ++ ++ A+I DT P E +S F Q A G ++ P
Sbjct: 2 KPVLAAVLCTAALDAMGVALTLPVMPALL------------GDVGL-GVDLGWR---FGVFIGIYALMQFLLAPAVGALSDRLGRRPVLLVSLLGQALAYAALAVAPSYG--WLLAARALAGVFGSSTPVVSAFIADTTPAEERSRRFGQLGACMGVGFIVGP 146
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A0A4Q9H2Z0_9BURK (MFS transporter n=2 Tax=Aquabacterium lacunae TaxID=2528630 RepID=A0A4Q9H2Z0_9BURK) HSP 1 Score: 73.6 bits (179), Expect = 4.920e-10 Identity = 48/153 (31.37%), Postives = 74/153 (48.37%), Query Frame = 1
Query: 826 LPFMANRLIFPRESTG------PGDAGSEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAMIAWAGD 1266
+PF+ L+ S G P GS D + + YG + + L + SAP +G LSDR GRR L++ L G A++FFVT + L++ R+ G AN A+ +AY+ D PE ++ F A +G ++ P + GD
Sbjct: 1 MPFIMITLLIDMMSIGLIAPVLPKLVGSHYADPSAISLGYGAIQLSFALLQFFSAPVLGALSDRFGRRPVLLIGLTGMAINFFVTAFATDFI--WLLVVRMFAGMLCANIAVANAYVADITTPETRARNFGLLGAMFGIGFILGPVIGGLLGD 151
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A0A7K1C735_9ACTN (MFS transporter (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K1C735_9ACTN) HSP 1 Score: 71.6 bits (174), Expect = 5.430e-10 Identity = 57/189 (30.16%), Postives = 95/189 (50.26%), Query Frame = 1
Query: 916 GMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAM--IAWAGDSADAILVLSTVTMIFSAIVVEFTFVDTRPKGFRSHRMRDLVGEYLKEGARDL--AEVGK-KMSGVDLAEY 1467
G+ GL+ + + L +++ +P +G LSDR+GR+ ++++LLG A+ FVT G + L L R+L G A+ A+ + D PP + A++G ++ PA+ +A G V TV +I +AIV F +TRP R AR+L A+VGK ++ G+ +A +
Sbjct: 49 GLEVGLLFASFSLAQLVFSPILGRLSDRIGRKPVILISLLGTAIGSFVTGAAGALWV--LFLGRILDGASGASVAVAQGAVTDVAPPHQRPRLLGLLGAAFGVGFVVGPALGGLAALGGEHLPFYVAGTVALI-NAIVAFFRLPETRPVEAR-------------RAARELRDADVGKVRLWGLAVAGF 221
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A7H6K9_ANADF (Major facilitator superfamily MFS_1 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) TaxID=404589 RepID=A7H6K9_ANADF) HSP 1 Score: 72.8 bits (177), Expect = 7.920e-10 Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 1
Query: 817 LPVLPFMANRLIFPRESTGPGDAGSEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAM 1248
+PV+P A RL G EAW G L+ +GY + + AP G LSDRVGRR L+V++ A++F + + G +++ L++ RL G AN A+ A++ D PPE ++ A++G ++ PA+
Sbjct: 25 IPVMPLYAERL---------------GASEAWTG----LLSAGYSAMQFVFAPIWGRLSDRVGRRPVLLVSIAMTAVAFALYGLAGTFAM--LLVSRLFAGAATANIAIARAFVADVTPPEGRARGMGIIGAAFGLGFVLGPAL 147
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: W7CKC9_9LIST (Permease of the major facilitator superfamily protein n=9 Tax=Listeriaceae TaxID=186820 RepID=W7CKC9_9LIST) HSP 1 Score: 72.8 bits (177), Expect = 8.850e-10 Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 1
Query: 778 LATVVYAVSYTTSLPVLPFMANRLIFPRESTGPGDAGSEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAP 1242
++ + + ++ PV+PF+ I T PGD + M L+MS Y + SAP +G LSDR GRR L+V+LLG A+ FFV I G + L R++ G + + + AY D PPE ++ F SA G + P
Sbjct: 17 ISVFLIGIGFSIITPVIPFLVQPYI-----THPGD----------QAMVVTLLMSVYAVCMFFSAPVLGALSDRYGRRPILIVSLLGAAIGFFVFGIGGALWV--LFAGRIIEGITGGSISTIFAYFADITPPEQRTKYFGWVSAMAGAGSIMGP 154
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: UPI001F59A106 (MFS transporter n=1 Tax=Anaeromyxobacter sp. SG63 TaxID=2925408 RepID=UPI001F59A106) HSP 1 Score: 72.4 bits (176), Expect = 1.130e-9 Identity = 49/161 (30.43%), Postives = 76/161 (47.20%), Query Frame = 1
Query: 763 LAARNLATVVYAVSYTTSLPVLPFMANRLIFPRESTGPGDAGSEGVDEAWRGMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPA 1245
LA + V + + +PV+P A L G EAW G L+ +GY + + AP G LSDRVGRR L+V++ A +F V + G +++ L+ RL G AN A+ A++ D PPE ++ A++G ++ PA
Sbjct: 7 LAILFVIVFVDLLGFGMVIPVMPLYAKAL---------------GASEAWTG----LLSTGYSAMQFVFAPIWGRLSDRVGRRPVLLVSIFMTAAAFLVYGLAGSFAV--LLASRLFAGAATANIAIARAFVADVTPPEGRARGMGLIGAAFGLGFVLGPA 146
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Match: A0A7K0YNP3_9ACTN (MFS transporter n=13 Tax=root TaxID=1 RepID=A0A7K0YNP3_9ACTN) HSP 1 Score: 72.4 bits (176), Expect = 1.260e-9 Identity = 56/176 (31.82%), Postives = 86/176 (48.86%), Query Frame = 1
Query: 916 GMAYGLVMSGYYLTKMISAPCIGYLSDRVGRRQALVVTLLGGALSFFVTKIWGQYSIHGLILCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAM--IAWAGDSADAILVLSTVTMIFSAIVVEFTFVDTRPKGFRSH-RMRDLVGEYLKEGARDLAEVG 1434
G+ GL+ + + L +++ AP +G LSDR+GR+ ++++LLG A+ FVT G + L L R+L G A+ A+ + D PP + A++G ++ PA+ +A G V TV +I +A V F +TRP R RMR G K LA G
Sbjct: 72 GLEVGLLFASFSLAQLVCAPLLGRLSDRIGRKPVIMISLLGTAVGSFVTGAAGALWV--LFLGRILDGASGASVAVAQGAVTDLAPPSERPRLLGLLGAAFGVGFVVGPALGGLASLGGEHLPFFVAGTVALI-NAGVAWFRLPETRPARVRDEARMRSSQGTSAKIRLWGLALTG 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2623.7167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2623.7167.1 >prot_H-paniculata_contig2623.7167.1 ID=prot_H-paniculata_contig2623.7167.1|Name=mRNA_H-paniculata_contig2623.7167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=666bp MPGTPYRAVPAERKSLRRRLAGWAGIEDRPPLGQESWWFPDDRRSSHHSRback to top mRNA from alignment at H-paniculata_contig2623:8119..17564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2623.7167.1 ID=mRNA_H-paniculata_contig2623.7167.1|Name=mRNA_H-paniculata_contig2623.7167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9446bp|location=Sequence derived from alignment at H-paniculata_contig2623:8119..17564- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2623:8119..17564- >mRNA_H-paniculata_contig2623.7167.1 ID=mRNA_H-paniculata_contig2623.7167.1|Name=mRNA_H-paniculata_contig2623.7167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3996bp|location=Sequence derived from alignment at H-paniculata_contig2623:8119..17564- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |