mRNA_H-paniculata_contig26200.7158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.930e-26 Identity = 73/169 (43.20%), Postives = 92/169 (54.44%), Query Frame = 2
Query: 104 NPTIELGLRR--CLEAFAVVLNELCDAQGCHMSTVNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRGVSICKTRGSEQYCVMRVPPLRARSVTWEVPSELWARDSVLL-VHVQKLVFGCTFDSRMLDYVVWPRGIKKVSFGDADGSGFNGSLDEVEWPASLLEVNLGH 601
+P+ LG R CL+ V LNE CD + + ST LQLASL LC+ CR TLH+ V TPR L + + ++ C RVP LRAR TW VP+ R S+ + V L FG F LD +VWPR +K + F + S N LD V WPASL +V LGH
Sbjct: 124 SPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGS-LDAIVWPRRLKTIEFRQS--SPLNRLLDGVSWPASLRKVCLGH 289
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.900e-19 Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 2
Query: 134 CLEAFAVVLNELCDAQGCHMSTVNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRGVSICKTRGSEQYCVMRVPPLRARSVTWEVPSELWARDSVL-LVHVQKLVFGCTFDSRMLDYVVWPRGIKKVSFGDADGSGFNGSLDEVEWPASLLEVNLG 598
CLEA V LNE CD + + ST LQLASL C+ CR+ T+H+ V E PR L + ++ C RVP LR+R VTW +P+ R + + ++ L FG F L+ V WP ++ + F S F+ +++ V+WP L V G
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDS-LEAVPWPEHLRTMEFHH--DSPFDQTIELVQWPPFLQNVTFG 203
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.590e-18 Identity = 59/153 (38.56%), Postives = 80/153 (52.29%), Query Frame = 2
Query: 83 NVGESAANPTIELGLRRCLEAFAVVLNELCDAQGCHMSTVNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRG----VSICKTRG---SEQYCVMRVPPLRARSVTWEVPSELWARDSVLLVHVQKLVFGCTFDSRMLDYVVWPRGIKKVSFG 520
N SA G RCL+AF V LN+ CD G ++ST LQL+SLP CV CRS+ T+H++V TP L + + +G S++ RVP LRAR VTW++ E V L V+ V G + M D VW G++ +S G
Sbjct: 13 NPANSARTVFSIAGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSM-DEAVWSDGMRSLSLG 164
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.550e-17 Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 2
Query: 134 CLEAFAVVLNELCDAQGCHMSTVNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRGVSICKTRGSEQYCVMRVPPLRARSVTWEVPSELWARDSVL-LVHVQKLVFGCTFDSRMLDYVVWPRGIKKVSFGDADGSGFNGSLDEVEWPASLLEV 589
CL A V L E D + + ST LQLASL C+ CR+ TLH+ V PR L + + ++ RVP LRAR VTW +P+ R + L+ + L FG F+ L+ V WPR ++ ++F + S FN +D V+WPASL +
Sbjct: 36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGS-LEAVTWPRRLESIAFHNF--SPFNTPIDLVKWPASLKRL 185
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 6.080e-17 Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 2
Query: 134 CLEAFAVVLNELCDAQGCHMSTVNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRGVSICKTRGSEQYCVMRVPPLRARSVTWEVPSELWARDSVL-LVHVQKLVFGCTFDSRMLDYVVWPRGIKKVSFGDA-------DGSGFNGSLDEVEWPASLLEVNLG 598
CL A V LNE D + + ST QLASL C+ CR+ TL ++V TPR L + ++ C RVP LRAR VTW++P+ R+S+ ++ L F F+ L+ V WPR +K V D S F+ + V WP +L ++ G
Sbjct: 12 CLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDS-LEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFG 173
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 4.250e-10 Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 2
Query: 140 EAFAVVLNELCDAQGCHMSTVNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRGVSICKTRGSEQYCV--MRVPPLRARSVTWEVPSELWARDSVLLVHVQKLVFGCTFDSRMLDYVVWPRGIKKV 511
+A + LN++ G + S + LQLASL LC+ CR + T H+ V D L S + S + RVP LR R VTW + + V LVFG +FD R+ D V WP G+KK+
Sbjct: 17 DALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDAFESVDVLVFGDSFDYRV-DRVTWPPGLKKL 141
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Match: D8LRD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD1_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 8.390e-8 Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 2
Query: 200 VNLQLASLPLCVLCRSLATLHVRVAEDTPRNLRG-VSICKTRGSEQYCVMRVPPLRARSVTWEVPSELWARDSVLLVHVQKLVFGCTFDSRMLDYVV---WPRGIKKVSFGDADGSGFNGSLD 556
+ LQLASL LC+ CRS+ LHVRV TP L +TR ++Q V RVP ++AR VTW++ S+ L V +FG ++ +D V WP I+ + F D GFN L+
Sbjct: 1 MQLQLASLQLCISCRSVPRLHVRVDRSTPTPLWARPPERETRRAKQRRVGRVPVVQARVVTWKLSSQRLGLSGESLASVPCFIFG----NQGIDQVGGMRWPPAIQTLMFAD----GFNSPLE 115 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26200.7158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26200.7158.1 >prot_H-paniculata_contig26200.7158.1 ID=prot_H-paniculata_contig26200.7158.1|Name=mRNA_H-paniculata_contig26200.7158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=420bp MSIDAKLTNDSNVGESAANPTIELGLRRCLEAFAVVLNELCDAQGCHMSTback to top mRNA from alignment at H-paniculata_contig26200:1333..3502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26200.7158.1 ID=mRNA_H-paniculata_contig26200.7158.1|Name=mRNA_H-paniculata_contig26200.7158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2170bp|location=Sequence derived from alignment at H-paniculata_contig26200:1333..3502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26200:1333..3502+ >mRNA_H-paniculata_contig26200.7158.1 ID=mRNA_H-paniculata_contig26200.7158.1|Name=mRNA_H-paniculata_contig26200.7158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2520bp|location=Sequence derived from alignment at H-paniculata_contig26200:1333..3502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |