mRNA_H-paniculata_contig262.7157.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig262.7157.1
Unique Name	mRNA_H-paniculata_contig262.7157.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: D7FU31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 6.230e-122
Identity = 187/209 (89.47%), Postives = 199/209 (95.22%), Query Frame = 1

Query:  262 MVQYSKEMESTKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEPVRLNRKQVAKNRFVKVGGGVDV 888
            MVQYSKE+E TKSAKARGSNLRVH+KHMREVAHLI+GMKLSK+K YLQDVL+YKRAVPFTMFTGGVGRHAQGKLPI+KDY+GDP++KT+PGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESK LDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKK  EP +  RKQVAK RFVK GGGV+V
Sbjct:    1 MVQYSKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 209

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: W7TUF4_9STRA (60s ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA)

HSP 1 Score: 239 bits (610), Expect = 9.060e-70
Identity = 126/207 (60.87%), Postives = 153/207 (73.91%), Query Frame = 1

Query:  262 MVQYSKEMES-TKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEPVRLNRKQVAKNRFVKVGGG 879
            MV+YS+E++   K+AKARGS+LRVH+KH+REV+H I G ++ K+KQ+L+DVL YKRAVPFT F GG+GRHAQGKL                          PGS+C WPQKAT+IVLD++ NAESNAE KG+D D+LYIVH Q NRAPKQRRRTYRAHGRINPYMSSPAH+E+IL+EK V VKK     +L RKQ A+   V+VGGG
Sbjct:    1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKL-----------------------LSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAAR---VRVGGG 181

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK)

HSP 1 Score: 237 bits (604), Expect = 8.050e-69
Identity = 127/212 (59.91%), Postives = 156/212 (73.58%), Query Frame = 1

Query:  262 MVQYSKEMESTKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEP----VRLNRKQVAKNRFVKVGGGVD 885
            MV YS + E  KS+KA+GS+LRVH+KHMREVAH I+GMKL+K+K +L+DVL +K+AV FT FTGG+G HAQGKL  +                       PG+KCRWPQKAT+IVLDL+KNAE+NAE KGLD++SL + H+Q NRAPKQRRRTYRAHGRINPYMSSPAHIEL+L+E+   V K  E     ++L+RKQ A+ R V VGGGV 
Sbjct:    1 MVNYSIKDEPEKSSKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKLRKA-----------------------PGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRR-VTVGGGVS 188

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A836C7U9_9STRA (Ribosomal protein L22/L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U9_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.810e-64
Identity = 122/211 (57.82%), Postives = 149/211 (70.62%), Query Frame = 1

Query:  262 MVQYSKEMES-TKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEPVRLNRKQVAKNRF--VKVGGGVD 885
            M +Y+KE E+  K++KARG+ LR H+KH+REVAH I+G    ++ ++L+DVL +KRAV FT FTGGVGRHAQGKL                         +PG K RWPQKAT++VL LVKNAESNA +KGLDVD L I H+  N AP+QRRRTYRAHGRIN YMS+P H ELIL+EK VQV KA E  +L+RKQVA  RF  VKVGGG++
Sbjct:    1 MTRYAKEAENPAKASKARGAYLRCHFKHLREVAHNIRGKSCVEAVRFLEDVLKFKRAVTFTKFTGGVGRHAQGKL-----------------------VNAPGDKVRWPQKATKVVLGLVKNAESNAVTKGLDVDKLVITHIMANHAPQQRRRTYRAHGRINAYMSTPGHFELILAEKAVQVPKAAEAPKLSRKQVAAARFKSVKVGGGLE 188

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA)

HSP 1 Score: 223 bits (568), Expect = 9.170e-64
Identity = 125/210 (59.52%), Postives = 147/210 (70.00%), Query Frame = 1

Query:  262 MVQYSKEMES-TKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEP--VRLNRKQVAKNRFVKVGGGV 882
            M  YS+E E  T+SAKARG +LRVHYKH REV H I+G  L+K+K++L DVL+ K AVPFT +TGG GRHAQGKL                         +PG KCRWPQKATRI+LDLVKNAE+NAE KGLDV+ LYI H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK+  V KA EP   +++RK+ A  R  K GGGV
Sbjct:    1 MPSYSQEPEDQTRSAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEMKAAVPFTKYTGGPGRHAQGKL-----------------------LNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRL-KSGGGV 186

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC)

HSP 1 Score: 221 bits (564), Expect = 3.220e-63
Identity = 122/210 (58.10%), Postives = 149/210 (70.95%), Query Frame = 1

Query:  262 MVQYSKEMES-TKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVE--PVRLNRKQVAKNRFVKVGGGV 882
            M  YS+E E  ++SAK+RGS+LRVH+KH REV H I+G+ + K+K++L+ VL+ K AVPFT FTGGVGRHAQGK                       T  +PG KCRWPQKAT+I+LDLVKNAE+NAE KGLD D LYI H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK+  V KA +  P +++RK+ A+ R  K GGGV
Sbjct:    1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGK-----------------------TLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRL-KSGGGV 186

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.320e-63
Identity = 122/210 (58.10%), Postives = 149/210 (70.95%), Query Frame = 1

Query:  262 MVQYSKEMEST-KSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEP--VRLNRKQVAKNRFVKVGGGV 882
            M  YS+E E   ++AKARGS+LRVH+KH REV+H I+GM LSK+K +L  VLDYK+AVPFT FTGG GRHAQGKL  +                       PG KC+WPQKAT+I+LDLVKNAE+NAE KGLD D LY+ H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK   V+K+ +   V+++RK+ A+ R  K GGGV
Sbjct:    1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKLRNA-----------------------PGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRL-KSGGGV 186

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A7S2WRP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP5_9STRA)

HSP 1 Score: 221 bits (563), Expect = 6.800e-63
Identity = 122/209 (58.37%), Postives = 152/209 (72.73%), Query Frame = 1

Query:  259 TMVQYSKEM-ESTKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVE-PVRLNRKQVAKNRFVKVGGG 879
            TMV+YS +M E+T  +KA+ S+LRVH+KH RE+ H I+GM+L+K+ ++L+DVL YK+AVPFT FTGG+GRHAQ K                          +PGSK RWPQKAT++VLDLVKNAE+NAE+KGLD D L++ H Q NRA KQRRRTYRAHGRINPYMSSPAHIELIL+  E  V KA + P +L R++ A+ R VKVGGG
Sbjct:   15 TMVKYSMDMDEATDYSKAKASSLRVHFKHTREIMHTIKGMQLAKALKFLEDVLQYKQAVPFTKFTGGIGRHAQLKQ-----------------------MKAPGSKGRWPQKATKVVLDLVKNAEANAETKGLDTDKLFVKHAQANRAQKQRRRTYRAHGRINPYMSSPAHIELILASIEDPVAKAEDAPQKLTRRRQAQLR-VKVGGG 199

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA)

HSP 1 Score: 220 bits (561), Expect = 8.440e-63
Identity = 121/211 (57.35%), Postives = 151/211 (71.56%), Query Frame = 1

Query:  262 MVQYSKEME-STKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVE--PVRLNRKQVAKNRFVKVGGGVD 885
            MV+YS + +   KSAKARGS+LRVH+KH REV   I+GMKLSK+K +L+DVL+YK+ VPFT FTGGVGRHAQ K                          +PGSK RWPQKA++IVLDL+ NAE+NAE KGLD D+LY+ H QCNRAP  RRRTYRAHGRIN YMS PAH+E+IL+E++  V +A E  P++L+RK+ A+ R  K GGGV+
Sbjct:    1 MVKYSFDADLPVKSAKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAK-----------------------NMKAPGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRL-KQGGGVE 187

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BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Match: A0A3R7JUX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.080e-61
Identity = 117/203 (57.64%), Postives = 145/203 (71.43%), Query Frame = 1

Query:  286 ESTKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEPVR---LNRKQVAKNRFVKVGGGVD 885
            ++ ++AKARGS+LRVH+KH REV+H I+GM L+K+K +LQ V +YK+AVPFT FTGG GRHAQGKL  +                        G KC+WPQKAT+I+LDL+KNAE+NAE KGLD D LY+ H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK   V KAVE V+   ++RK+ A+ R  K GGGV+
Sbjct:   10 DAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKLRGAA-----------------------GDKCKWPQKATKIILDLLKNAEANAEVKGLDTDLLYVSHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEVKTAKVSRKRQAQLRL-KSGGGVE 188

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig262.7157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FU31_ECTSI	6.230e-122	89.47	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
W7TUF4_9STRA	9.060e-70	60.87	60s ribosomal protein l17-2 n=2 Tax=Monodopsidacea...	[more]
A0A6V1UCU8_HETAK	8.050e-69	59.91	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A836C7U9_9STRA	4.810e-64	57.82	Ribosomal protein L22/L17 n=1 Tax=Tribonema minus ...	[more]
A0A485L8A8_9STRA	9.170e-64	59.52	Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=...	[more]
A0A067CFI1_SAPPC	3.220e-63	58.10	50S ribosomal protein L22 n=4 Tax=Saprolegniaceae ...	[more]
A0A5D6XKD7_9STRA	6.320e-63	58.10	Uncharacterized protein n=25 Tax=Oomycota TaxID=47...	[more]
A0A7S2WRP5_9STRA	6.800e-63	58.37	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S1TQM1_9STRA	8.440e-63	57.35	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A3R7JUX4_9STRA	3.080e-61	57.64	Uncharacterized protein n=2 Tax=Phytophthora kerno...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig262	contig	H-paniculata_contig262:28553..35233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	379.8
Seed ortholog evalue	8.3e-103
Seed eggNOG ortholog	2880.D7FU31
Preferred name	RPL17
KEGG rclass	RC00031,RC00042,RC00773
KEGG ko	ko:K00015,ko:K00474,ko:K02880,ko:K06479,ko:K08267
KEGG Reaction	R00717,R01388,R03451
KEGG Pathway	ko00310,ko00630,ko01100,ko01110,ko01120,ko03010,ko04150,ko04650,map00310,map00630,map01100,map01110,map01120,map03010,map04150,map04650
KEGG Module	M00177
Hectar predicted targeting category	other localisation
GOs	GO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007154,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030684,GO:0030687,GO:0031667,GO:0031668,GO:0031669,GO:0031672,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042594,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045787,GO:0045931,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090068,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:1990928,GO:2000045
EggNOG free text desc.	structural constituent of ribosome
EggNOG OGs	COG0091@1,KOG3353@2759
Ec32 ortholog description	Ribosomal protein L22/L17, eukaryotic/archaeal
Ec32 ortholog	Ec-27_001230.1
EC	1.1.1.26,1.14.11.8
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko00537,ko01000,ko03011,ko04090,ko04516
Exons	8
Model size	2917
Cds size	630
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig262.7157.1	prot_H-paniculata_contig262.7157.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig262 28814..33207 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929782.8450615-UTR-H-paniculata_contig262:28552..28813	1622929782.8450615-UTR-H-paniculata_contig262:28552..28813	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig262 28553..28813 +
1691481008.5062585-UTR-H-paniculata_contig262:28552..28813	1691481008.5062585-UTR-H-paniculata_contig262:28552..28813	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig262 28553..28813 +
1622929782.9834523-UTR-H-paniculata_contig262:33207..35233	1622929782.9834523-UTR-H-paniculata_contig262:33207..35233	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig262 33208..35233 +
1691481008.6138723-UTR-H-paniculata_contig262:33207..35233	1691481008.6138723-UTR-H-paniculata_contig262:33207..35233	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig262 33208..35233 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig262:28553..35233+
coding sequence from alignment at H-paniculata_contig262:28553..35233+

protein sequence of mRNA_H-paniculata_contig262.7157.1

>prot_H-paniculata_contig262.7157.1 ID=prot_H-paniculata_contig262.7157.1|Name=mRNA_H-paniculata_contig262.7157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MVQYSKEMESTKSAKARGSNLRVHYKHMREVAHLIQGMKLSKSKQYLQDV
LDYKRAVPFTMFTGGVGRHAQGKLPISKDYVGDPTAKTLPGNKHKHTFVS
PGSKCRWPQKATRIVLDLVKNAESNAESKGLDVDSLYIVHVQCNRAPKQR
RRTYRAHGRINPYMSSPAHIELILSEKEVQVKKAVEPVRLNRKQVAKNRF
VKVGGGVDV*

mRNA from alignment at H-paniculata_contig262:28553..35233+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig262.7157.1 ID=mRNA_H-paniculata_contig262.7157.1|Name=mRNA_H-paniculata_contig262.7157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6681bp|location=Sequence derived from alignment at H-paniculata_contig262:28553..35233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTGGTTGGTTACAACGACGTTACCGGTTAACTGGCGCTGTACTAATCC
CTTTGCCCTCACACGTTGTACTTTTAATATCTAGTCCTTATCCTGTTAAT
TTTTTGATCAATCAAATACACGTATTTTACTCTTAACGCGCGCGTTAAAC
ACATCCATTTCAAAGGGCTTCAGGCCTTCTTTTCGTGGCCACGACTCTCC
CCCCTCAGTCGGCACTGGGTCAGCTGCCAGCCGTTGTGGGTAGCAGATCA
GCTTGGGCACCATGGTTCAATACAGGTAGGAGACAAATCGAGCTGTCCTC
CGCAGGCTTACATCTACTGCTCTGGGTTGTAGTACGTTACCCTTTGCCTG
GTGGACTGGATTGAGAGCGCCTCATACTCATCATTGTCATACCTTGAGAG
AGGGCATTTTTCGATTGCTGCTTAGGTTGTGGAGGGCAAGTGATCCATCA
AGATCTATGCGAGGAAGCAGAGGCACCATGTCACCTCTACTTGAGCAATG
CATTGTTGTTACTTTGTTTTCGGCAGTTTTGTGAGGACATGCACCTCGGT
AGACGTACTGTTGCAGTGATTTTTGTTTGGACAGCGCCTCACCTACCAAA
TGTGTAGCAGGGATGCTGCCCTAGCAGGGATGCTGCCCTAGCAGGGATGC
TGCACCACGAAGACAGTCAGTACTGTCTGTACATAAGTCTCTCCAAGCGC
AGAGGCCACCTTGCTCGTTTCAGAGGTTGGTGTGTTTGTATTTTCATCAC
TTTGTCGTGCGTGTTCTTCAAATCCAAAACGTACCCATTCGTTGTTGCGC
CATGTGTACTGTTGGGTGTGCTCCGTGGTGTCATCTTCATCCTTTTTTCG
CCCTACCCATGATTTGCGAACGGTGACACTCGGAAACTTTGGCCTGATCG
CCCGTGTCGGAGAGCAGCAAGGAGATGGAAAGCACCAAATGTAAGTCAAA
CGCGTCCCCCGGGTGTTTTATCCAGCTCGTTTCTACTTATCTTCGTAACA
AACATAATTGTTCGATGTATGTGGTTTAAAGGTGAATCATGGTGCAGTTC
GGGAACCAACAAACTCATTCGATGTGTGTCTTCGACCGAACTGTCCACAC
CATATATTGACTACTCGGTTTCACTTGTGTCGATGAAATAGATGCCCTGA
CTGAACTCATCTGTAGACCCCACGGTAAGGATTTTTTAACAGTACCCCGC
AACTTTTGAGGGAGCTGAGATTGGTGTACTTTGGGCAGTGTGTGGATTCT
GCACACCGTTCATGTGGCACTCACCATCTTGAACCAAAAATATACTGGAG
GACATCAGTTCGTGTCTGTCCTTGATGAAAATGAGGGGTATCACCACATG
AAAACATTAGAGTACCAGTAGAGTGCAGCGCAGATACTGCCGGGTACCAT
CGCCTGTTGGCCCAGCCTTTTAACGAATGGGAGTGTAGACGGGGCCCCCT
CCTTCTCGAGAAGATGGGGCATGGGTCAGCAGAATCAAGATATCCTTTCC
CCATTCCTCCTCGCGAGGCGGTGGCCGCGGTGGCCAACGCGTCACCCATA
CTCGGCCCATCGTTGGCAATGTTGATACGAACAAGGCAATCATCGTTTTC
CACACTTTCGTTACCCGGGAAAAGATGAGAAGCACACATAACTTCAGGTT
TGCTTGACAAATAAATACAGTGGATTTCAATTTACGTTCGAGCTACGGGC
TACATCAACACATAATACTGAAGCAACCCATGGACTCGACCTGCAGACTT
ACATCCGAGAATTGAATTAATCACTTACCCAAGAACTGCTGTCGAGCTGT
ATAAGTGATTATTTCAATTCTCGAATGTAAGTCTGTACCTACCCTCCAGT
ATAAAAAACTCGAAACCGTGGTAACTGCAAAGTACCCAGCATATATATGA
TGATTTCACGTTGATCACGCTAACTTTCTCCCCACTAGATGAGACATGGA
ATTGTAGCAAAAACGTGCTCTCTGACCTTGTTCCATTACAATTCGTTGCA
CCTCTTGCCTGTTTAGCCGCGAAAGCCCGCGGGTCGAACCTGCGGGTTCA
CTACAAGCACATGCGCGAGGTGGCTCATCTTATTCAAGGGATGAAGCTAT
CCAAGTCCAAGCAATACCTTCAAGTGAGAGAGCTCCGTGTATCTATCGCT
GGTTTCTTTGACATTCGATTGCGCTTGACTCAAAAAGTTAATAGTGTGCC
TTGGAGCACCCGAGTCGCGAAATGCCGCATTTCGTTTGCGCTTTTCGCGT
ACCTGGGCTCGATTGGACTAGATATTTTCGATACGACGGATCTTTCGTCA
TGGCATTTTACTGACTAATCGCTCGCATTGTTTTGGTGCTCGGCGTGAAA
TCGGCTCTCACTCGTCTAATGAAGAAGTTGCAGTTCTTGGAATCTGGATG
GCAGCCCGACAAAATGCCGATAGTCCCGCCCTTGGATGAAACTATGACAA
TGCCCTCTCTACTGCGTCTCAATCACTCGTTTGATTTGTACAGGACGTGC
TCGACTACAAGCGTGCCGTGCCTTTCACCATGTTCACGGGTGGGGTGGGC
AGGCATGCCCAGGGTAAGCTGCCCATCTCGAAGGACTACGTGGGAGACCC
GACCGCGAAGACGGTGAGGCAAAAGCTGTGTATTTCCGACATTAAGTCAT
ACGCTCAGCCTTGAGGCAAATCCGTGTGCTTGGTATAGCAACCATATTCG
TAACTGACTGGATTCTTCTGTATCGCTTCACTATGAAAGGTTGTGAGTCT
GAATTTCATCAAATCCATCATAGATGTCATTGTTTTTGTTCGATGTTCTG
GTCATGGTTGGAGATGGACTTTAAATTTCTTAACCCACTGTGGGCATTTC
AAGATTACGATTGTACTTGTGGTCGCAATACTCTCTGGCGTTGTCGAACA
ACCCATCCATGATCTTGTGGGCTCGGAGTAACCATAATCTTCCAGGAGTT
GGAAGGCAGTTGTTCTGTATAAAAAATTCCTCAGGAGTCGCCAATCGTTG
GACTTCCCTTGAACTTCTTTGTCTCCACTGTTTTCCTGCTGTACCATCTT
TGCGCAGTTGCCTGGGAACAAGCACAAGCACACTTTCGTCTCGCCAGGAA
GCAAATGCCGCTGGCCGCAGAAGGCGACGCGTATTGTGCTGGATCTGGTG
AAGAATGCCGAGTCTAATGCGGAGGTAAGTGCCTCGACAAAAAGTTGTAA
CTGACACGTTGAAAACTGCATGCACTCGAGGGATTGTAGACGTGACCTTC
AATCGTGAAACATTTCATCTGACGCCCCAATTCTGAATTCCGTCAGTAAC
AGAATATGAGAAGGAATAATGTGCAAAATCGATAACTCGAGGTTATTTGC
CGTCGTTTCACCTGCCTTTTTCGTCTTTCGTTTCACCCGCCCTTGTCTTC
TTGCCAGAGCAAGGGACTGGACGTGGATTCGCTGTACATCGTGCACGTGC
AGTGCAACCGCGCGCCGAAGCAGAGACGCCGCACCTACAGGGCCCATGGT
CGCATAAACCGTGAGTTGTGGTTCTTGAATCCCCTCTCACAACAACCACT
GTCTTCAATGATTTCCAGTCACTTGTAAAATCTGGTGTGTCCTTGGGGTA
TGGGCGACTCGGATCACTGTGAGGACCCTAGTCTTATTTCGGCCCCGAAG
TTATACTTTACGTGAAGTAAGTGAAACGATCATTCGTCCGTCTTGGAGTG
CCAAATATCAAATTTACCCTTGTCGCCAAAGACGATGAGGCCGCGGCCTT
CGGCAAAGATTTTTCACCAATCACCTCTTCGAGCGTGACATGAAAGTTTA
TAATCCTTTTGTTATCTCTCGTTCTCTTCGATTTGCTGACGATGATCCGA
TTCGTTCTTTACCGGAAAAGCGTACATGTCCAGCCCGGCCCACATCGAGT
TGATTCTGTCGGAGAAAGAGGTTCAGGTGAGCGAAACCGTGGACCTTGGA
GTAATTCTGATTTGCATTGGTTCAGGTGCCGGCTTTTGATGATTCTGATG
AGTATGCTTCGCACTGAAAATGTGGTGTTGAACCATCTGACCCTTGACTA
TTCTGCTGTACGGCAGTGCTACGTGCCATCGACGGGCTTCGATGGTGTGA
TTAATGAAGCCAAGCTTATCTGACCGTACCGAGGTGGCGTTTTTATTGAA
TCATGTAGTCAGTTCGAATAGGCGCAACTTCTGCCGAGACTTGACTGAAT
TCTATTACAGTATAGCATGCCAAGAGTAAATACTCCCCGAACACCTGGCC
TTCAAGTGTTGAAGGATACTTTGGATCAAGATCACGCCAGTGTGCAAAAA
GTAGTCCATGTCGGGTGGCCCATGACCGAGTTATTTAGAGCTGTCGTAAG
TTGTCAGAGTGTCAAATTGCTCCCAAAACAAACCTCCACTGGAATATTCC
GTTCCCGTCCGAAGCATTCGAGGAATTTGTGTTCGATTGAGTCGTGTAGC
ACATTGATTATCCGGCCTTCCCGGATATTTTGACTGTGCTCTGCAGTTTC
CGTCAAACATGACATGAATTCGGCGCATGATTTATTCTGCTTTCACGTGG
GTGCCGACTCCACAGGTGAAGAAGGCTGTAGAACCCGTGAGACTCAACCG
CAAGCAGGTGGCGAAGAACCGCTTTGTCAAAGTGGGAGGAGGGGTGGACG
TGTGAATCGCTCTCAAGGCGCTGCTAGTTGGCTAGCAGCAACTTGAGAAC
CTGAAGCTGCATGCTCGACACTAGATGTGAAGCGTGTGCCTCGGGTCGTA
CAGCTGGTGCCCAAACGGATTTAAAAAGAAGATGAAACCATTCGATTTGT
AACTTGACATGGTACTTGATGCACTTTGTTCGGTCATGATGAAGCATTTC
CCATGCGTTCGGATTTTGTGCCGGCTACATTGTGCACACCTTCCAACTTT
TTGAGGCAAATCGCAAAGCTCCTGCGGGGCCGCTAGTGCATATGAACCCC
ACGATCTTCCAGTTTATCTGTTGTCATGGCAGGCGACACAAGCCCTTACA
TCATGCAACCATTCCTTTGTAAAGTCATAACGCTTATTGACTGTCAATGG
GCTCAACCTTCAATATAAGTATTGTAATCACAAGAATTTGTTGGCTACAA
GCGATGTGGGCATCGTCATGCTTTATCGAGAAGACGGGAGATATTAGGAA
TTATGGACACAATTTTTCGTAGGATACAGGGTTCGCTGGATTCGATAGAA
ATATCGAGAAAATGGTGTTAGCGGCAGGTTTCTTCCGCAGGCACACGATC
TGTTATGATTTTTGATATTCTATTTAATTTTAACAGATCCCATTTCCTGA
TACTGTTCAGAAATTTGCCACCTACTGCAGTGAAGGAACTTTCCTGCACG
AGCGGATACAATTGTCAACGAGGAAATAAACTCGTATCACTTCACACAAG
TCATGTTCATAATATTTTTGAATCATGTCAGCGGCGACATCCAATTTGAA
GCGTAGTAAATGTGCAACACTTTCGCTCCTAGCGTCATATATTACAGTTG
CGCAACAATGAAATATATCATAGGATAATATTATATTACAAAAATGGAGA
CGATATTACACGCGTAGTGATTGAACTGGTCTACATTACAGGTGGAATAA
GCAACCGATCTGAATCATCTATCGCCGTAACACAGCAAACATTATACCCA
ACGGAAGAATAATGTAGTGCAAATGGAGGAAAGATTGTACGCCTTACCGA
ACATGGTCCAGGATATATTTTACCTTTGACCCACCAATAGGGACGATATG
CAATATACCGGAAAGGATCACAACTGTACTTGTAACATACTGGGCAAGAC
TAACATTATATGATCCATACCTATTATTCTTCCTGAGAAAGAGAATTAAT
GTGACATAATATCATACCGCATGTGATGTTAATCACAATCGTACGGAAAA
GATGGACACAAAATCACACTACAGTTGACAATTTATCTCTGAAACGGATG
GCTTCTAGGCATGACAGTTCAGATGAAACGAGGGCCTGGTGATACCTACG
AACAAGTCATACTTACAATTGGAAATGTTTCATTTACCCAGTGTACAGCT
GAGGTGTACACTCCGCCAACGCACTTTCGTATCAATTGGTTCGGGTGAAT
GTAGGTCGGAAGTTCTCTTCTACACTAAGATCCAACGAGACACTTTGCAT
GGATCAAAGAGGAGACACGAACTATACGGGCTTTGTCATGTCTTCAGCAA
ACGGGGATGGTACACGGGTACATGATACTTGTAGAGATTATGCAAAACTT
GTGCCGGTCGTGAACTTGAATCGATTTCATAGAAACATGACTCAAACGAA
AACTTATATCTGTAGATACGAAATAGATATAGATGTGTGGTAATTCCTGT
CAGTTTGTCAGCGCAGGCCAAACGAAACAAATAATGAACCCGCTGTGACA
CCATCGGGATGCGACGGCTCTGCTCTCTGTGCTGCAGATAGTGTGATATA
ATAGCAATCATATGCGCGACGTCCACACTAGCTGTTCATGGCATACCTCT
AAAACTATGTAGCATCTACGCTGTGTGCTGTCAGTGACGATATAATCTAT
CTTTTTGTTTTGAGTACATCATCCACTCTGACCTGCGGTCAAAGAGCACT
TATTTGCGCTCCCAGACACTGAAATTCTCTGGAGGCATCGAGAGTTGGAT
TTGGGTGCGGAGGGGCTAGGTGAAAGGTGAG

Coding sequence (CDS) from alignment at H-paniculata_contig262:28553..35233+

>mRNA_H-paniculata_contig262.7157.1 ID=mRNA_H-paniculata_contig262.7157.1|Name=mRNA_H-paniculata_contig262.7157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig262:28553..35233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCAATACAGATGGTTCAATACAGCAAGGAGATGGAAAGCACCAAA
TCAAGGAGATGGAAAGCACCAAATCCGCGAAAGCCCGCGGGTCGAACCTG
CGGGTTCACTACAAGCACATGCGCGAGGTGGCTCATCTTATTCAAGGGAT
GAAGCTATCCAAGTCCAAGCAATACCTTCAACCGCGAAAGCCCGCGGGTC
GAACCTGCGGGTTCACTACAAGCACATGCGCGAGGTGGCTCATCTTATTC
AAGGGATGAAGCTATCCAAGTCCAAGCAATACCTTCAAGACGTGCTCGAC
TACAAGCGTGCCGTGCCTTTCACCATGTTCACGGGTGGGGTGGGCAGGCA
TGCCCAGGGTAAGCTGCCCATCTCGAAGGACTACGTGGGAGACCCGACCG
CGAAGACGGACGTGCTCGACTACAAGCGTGCCGTGCCTTTCACCATGTTC
ACGGGTGGGGTGGGCAGGCATGCCCAGGGTAAGCTGCCCATCTCGAAGGA
CTACGTGGGAGACCCGACCGCGAAGACGTTGCCTGGGAACAAGCACAAGC
ACACTTTCGTCTCGCCAGGAAGCAAATGCCGCTGGCCGCAGAAGGCGACG
CGTATTGTGCTGGATCTGGTGAAGAATGCCGAGTCTAATGCGGAGTTGCC
TGGGAACAAGCACAAGCACACTTTCGTCTCGCCAGGAAGCAAATGCCGCT
GGCCGCAGAAGGCGACGCGTATTGTGCTGGATCTGGTGAAGAATGCCGAG
TCTAATGCGGAGAGCAAGGGACTGGACGTGGATTCGCTGTACATCGTGCA
CGTGCAGTGCAACCGCGCGCCGAAGCAGAGACGCCGCACCTACAGGGCCC
ATGGTCGCATAAACCAGCAAGGGACTGGACGTGGATTCGCTGTACATCGT
GCACGTGCAGTGCAACCGCGCGCCGAAGCAGAGACGCCGCACCTACAGGG
CCCATGGTCGCATAAACCCGTACATGTCCAGCCCGGCCCACATCGAGTTG
ATTCTGTCGGAGAAAGAGGTTCAGCGTACATGTCCAGCCCGGCCCACATC
GAGTTGATTCTGTCGGAGAAAGAGGTTCAGGTGAAGAAGGCTGTAGAACC
CGTGAGACTCAACCGCAAGCAGGTGGCGAAGAACCGCTTTGTCAAAGTGG
GAGGAGGGGTGGACGTGTGAGTGAAGAAGGCTGTAGAACCCGTGAGACTC
AACCGCAAGCAGGTGGCGAAGAACCGCTTTGTCAAAGTGGGAGGAGGGGT
GGACGTGTGA