mRNA_H-paniculata_contig26185.7154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26185.7154.1
Unique NamemRNA_H-paniculata_contig26185.7154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: D7FXJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.610e-50
Identity = 87/139 (62.59%), Postives = 102/139 (73.38%), Query Frame = 3
Query:  150 AMLESTLLGWSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKARGSSHEVFREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDAS----------PL--TGETTFNLQTPSVFLDMRVPKAAATRLGHHRGFETMT 530
            A   S+LL WS++Q HIL+G G S+  YR P FPFS+EELPH+HKAR ++HE F  W  QG+G G  IAGAW+RPLFVGGWTHSDDA+          P+   GETTFNLQTPSVF+D+RVPKAAA  LGHHR F TMT
Sbjct:   28 AAASSSLLKWSDKQFHILTGGGVSSKWYRGPRFPFSQEELPHFHKARATTHEAFSLWHNQGTGCGAEIAGAWKRPLFVGGWTHSDDAAEPASRSSSSPPIGQEGETTFNLQTPSVFIDIRVPKAAAALLGHHRSFHTMT 166          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S0LXZ3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LXZ3_9CRYP)

HSP 1 Score: 109 bits (273), Expect = 6.590e-28
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  171 LGWSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKARGSSHEVFREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVPK 482
            + WS  Q  IL+G GR  +LY+ PLFP+  +ELPHYHK  G++ + F  W+  G      +AGAW R LFVGGW H+D  +    E  FNLQTPS+F+DMR+P+
Sbjct:    4 MDWSSIQGSILTGGGRLEELYQPPLFPWRPDELPHYHKVNGTTQKQFDAWKAAGV-CSDLVAGAWSRELFVGGWHHTDSHT----ERVFNLQTPSLFIDMRIPR 102          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP)

HSP 1 Score: 111 bits (278), Expect = 4.020e-26
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  177 WSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKARGSSHEVFREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVP 479
            WS  Q  ++SG GR   LY  P FP+ EEELPH+HK RGS+H  F +W+++     + + GAW RPLF+GGW HSD     T E+ +NLQTPS+F+D+R+P
Sbjct:   12 WSREQGAMVSGGGRIERLYDAPRFPWQEEELPHFHKVRGSTHADFGKWKKERR-THEIVVGAWFRPLFLGGWIHSD----ATTESVYNLQTPSLFIDLRIP 107          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.230e-26
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  171 LGWSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKARGSSHEVFREWRRQGS--GLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVP 479
            + W+ RQ HIL+G GR   LYR     F EEELPHYH ++G S ++F +W+   +       +AG W RPLFVGGW HSD +     ET +NLQTPSVFLDMRVP
Sbjct:    1 MDWTRRQGHILTGDGRLEQLYRD----FDEEELPHYHLSKGRSWQIFEQWQASPATRSTSACVAGVWSRPLFVGGWEHSDASQ----ETVYNLQTPSVFLDMRVP 97          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S1MU91_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MU91_HEMAN)

HSP 1 Score: 105 bits (261), Expect = 8.940e-25
Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  168 LLGWSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKARGSSHEVFREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVPKAAATRLGHHRGFETMT 530
            L+ WS  Q  IL+  G+   +++ P  PF E ELPHYHK R ++ + F +WR +G      ++G W RPLFVGG+ HSD ++    E  FN+Q+PS+FLD+R+P         H+G +TMT
Sbjct:   47 LIDWSATQGAILTYNGKLESVFKPPQHPFEEHELPHYHKVRRTTRQAFAKWRSEGRS-NALVSGCWSRPLFVGGFKHSDAST----ERVFNVQSPSIFLDLRLP--LHQDFSRHKGLDTMT 160          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S2WRQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRQ3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.210e-24
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  168 LLGWSERQSHILSGAGRSNDLYRKPL--FPFSEEELPHYHKARGSSHEVFREWRRQGSGLGKT----IAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVPK 482
            LL WS +QS IL+G GR+ +LY  PL  + F+ EELPH+H  +GS HE F EWRR      +       GAW R LF GGW HS +A     E  FN+QTPS+F+D+R+P+
Sbjct:    9 LLDWSAKQSRILTGGGRAEELYL-PLRGYSFAPEELPHHHLLQGSCHEAFAEWRRLAPATAEEPTSLAVGAWSRALFAGGWEHSTNAD----EAVFNIQTPSLFVDLRIPR 114          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S2PN58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PN58_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.840e-23
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  129 TTRSTSVAMLESTLLGWSERQSHILSGAGRSNDLYRKPL-FPFSEEELPHYHKARGSSHEVFREWRRQGSGL----GKT-IAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVP 479
            TTR  +    +  LLGW+ +Q  IL+  G++ + Y     FPF+  ELPHYH  RG SH+VFR W    S      GK+ I GAW RPLF G W HS D      ET +N+QT S+F+D+R+P
Sbjct:   59 TTRKNNTDDWQKALLGWTAKQGRILTDEGKATEHYCSERGFPFASNELPHYHLERGDSHQVFRRWAAAASSCDDQEGKSPIVGAWSRPLFTGKWEHSTD----NDETVYNIQTGSLFIDLRIP 177          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: L1JSR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JSR4_GUITC)

HSP 1 Score: 102 bits (253), Expect = 1.550e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  177 WSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKAR------GSSHEVFREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVP 479
            WS+ Q  ++SG GR   L+  P F + EE+LPH+HKAR      GS+H  F +W+R+       + GAW RPLF+GGW HSD  +    E+ +NLQTPS+F+D+R+P
Sbjct:    3 WSKEQGVMVSGGGRIERLFDAPRFSWKEEDLPHFHKARTCSWVKGSTHAAFGKWKRE-KRTHDIVVGAWFRPLFLGGWIHSDSRT----ESVYNLQTPSLFIDLRIP 104          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S2V381_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V381_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.230e-22
Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  168 LLGWSERQSHILSGAG---RSNDLYRKPLFPFSEEELPHYHKARGSSHEVFREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVP 479
            LL WS  Q  IL+GAG   ++++L R     FSE ELPHYH A GSSH VF+ W  QG+     I G W RPLF GGW  S D         FNLQTPS+F+DMR P
Sbjct:   10 LLEWSRTQGEILTGAGELQKNSELGRD----FSESELPHYHLANGSSHHVFQAWLSQGN-RSSIIVGCWSRPLFSGGWKESTDEDT----NAFNLQTPSIFIDMRFP 107          
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Match: A0A7S0IS63_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IS63_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.260e-20
Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  165 TLLGWSERQSHILSGAGR--SNDLYRKPL-FPFSEEELPHYHKARGSSHEVFREWRRQG-------SGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSVFLDMRVPKAAATRL 500
            +LL WS +Q+ +L+G G   +  LY     FPF EEELPH+H    S H VF   RR         SG  + + GAW RPLFVGGW HSDD S    +  FN+QTPS+F+D+R+P A  T L
Sbjct:   13 SLLDWSAKQARLLTGGGAHVAERLYSADNGFPFLEEELPHHHLLNASMHAVFA--RRSSLVASALESGAPEWMCGAWSRPLFVGGWEHSDDRS----DACFNVQTPSLFVDLRIPTARRTAL 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26185.7154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FXJ2_ECTSI3.610e-5062.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0LXZ3_9CRYP6.590e-2849.04Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0E054_9CRYP4.020e-2650.50Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A835YWZ2_9STRA6.230e-2652.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1MU91_HEMAN8.940e-2542.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2WRQ3_9STRA9.210e-2448.65Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2PN58_9STRA1.840e-2344.72Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
L1JSR4_GUITC1.550e-2245.79Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2V381_9STRA6.230e-2251.40Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0IS63_9EUKA1.260e-2046.72Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26185contigH-paniculata_contig26185:569..1911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue1.4e-42
Seed eggNOG ortholog2880.D7FXJ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2C8UU@1,2S355@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size542
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26185.7154.1prot_H-paniculata_contig26185.7154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26185 569..1903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.4140131-CDS-H-paniculata_contig26185:568..7811622929782.4140131-CDS-H-paniculata_contig26185:568..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26185 569..781 -
1691481008.3129227-CDS-H-paniculata_contig26185:568..7811691481008.3129227-CDS-H-paniculata_contig26185:568..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26185 569..781 -
1622929782.432192-CDS-H-paniculata_contig26185:1582..19031622929782.432192-CDS-H-paniculata_contig26185:1582..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26185 1583..1903 -
1691481008.3242242-CDS-H-paniculata_contig26185:1582..19031691481008.3242242-CDS-H-paniculata_contig26185:1582..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26185 1583..1903 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.449655-UTR-H-paniculata_contig26185:1903..19111622929782.449655-UTR-H-paniculata_contig26185:1903..1911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26185 1904..1911 -
1691481008.3327198-UTR-H-paniculata_contig26185:1903..19111691481008.3327198-UTR-H-paniculata_contig26185:1903..1911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26185 1904..1911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26185.7154.1

>prot_H-paniculata_contig26185.7154.1 ID=prot_H-paniculata_contig26185.7154.1|Name=mRNA_H-paniculata_contig26185.7154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MGKPEDYKGGGGDADSKRECQDTVMDTTTTTSIAATTTSITTRSTSVAML
ESTLLGWSERQSHILSGAGRSNDLYRKPLFPFSEEELPHYHKARGSSHEV
FREWRRQGSGLGKTIAGAWRRPLFVGGWTHSDDASPLTGETTFNLQTPSV
FLDMRVPKAAATRLGHHRGFETMTVST*
back to top

mRNA from alignment at H-paniculata_contig26185:569..1911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26185.7154.1 ID=mRNA_H-paniculata_contig26185.7154.1|Name=mRNA_H-paniculata_contig26185.7154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1343bp|location=Sequence derived from alignment at H-paniculata_contig26185:569..1911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAAAGATGGGAAAACCCGAGGACTACAAAGGCGGGGGAGGGGACGCC GATAGCAAACGCGAATGCCAAGATACCGTTATGGACACCACCACCACCAC CTCAATCGCCGCGACTACCACTTCCATCACAACTCGTAGTACAAGTGTTG CAATGCTGGAGTCCACCCTGCTGGGCTGGTCGGAGCGGCAGTCACACATC CTCTCGGGAGCAGGACGCTCTAACGATCTCTATCGGAAGCCTCTGTTCCC GTTCAGCGAGGAGGAGCTGCCGCACTATCACAAAGCCAGGGGATCGAGCC ACGAGGTCTTTCGGGAGTGGCGTAGACAGGTACTTTACACGTACTTGTAG ACCATTTGGTTCACTTGTAATTACTTATTGACTCACCATCATGGGGGTGA AATTTTCATGTGATCCATGAGATGAGATCCATACGTCCACGTACAAGATA CACACTCAAGATGTTGACCTAGTAGGCCAATAAACTGTTTAATGAAATAA GCCATAAACTATTTAATGAAATAAGATAGATGGCATGGTTAAGACAACTG TAGACGTGGTTGATGACCCTGGACGAACGCAGACACACCGTTTCTTTTTC TTTCTTTTTTTCTCCATCATATGAATCCAACCGATTAGACTCGTGATATA TACGCATGGTATGCGAACCGCATGGGTTTTGTACTAGATCGTGACACCGT GTATACCAACGCCTGAAAAGCAAATCGTTCAACGACTGTTTAAACGTGAT ATTTCAGAAAATACACACGCAAACACACCACATTTATTTTTCTGCTTTTC TCCAACACACCAATCCAATTACTCAGATCCGCCGTGTAGACTTTTTGAGT AATCGATCCAACGGATGTAAAAAGTAGACGTTTGGTATTGCTTACATCAA GGGCCTACAGTGATGCCAAGAAGGGCAATATACATACTGACGGACAGGCA AACATGACAAGAAATATTTCTAGCTGAGCGACTAAAAATAACCTAATGCA TATTCAAAAAACAAAACACGCCATCGCAAACATATACACATATATACTCA TACACGGCGTACACGTACAAGTATACTGAAACTAAGTATTGACTATTAAA TAGCAAGTATTGACTATAATGACATGGCAGGGAAGCGGGCTGGGCAAGAC CATCGCCGGCGCATGGCGGAGACCGCTGTTTGTAGGGGGCTGGACGCACT CGGACGACGCTTCACCGTTAACAGGGGAAACGACTTTCAACTTGCAAACG CCGTCGGTGTTTCTGGACATGCGAGTGCCGAAAGCAGCAGCCACTCGTCT GGGTCACCACCGAGGGTTCGAAACCATGACCGTAAGTACGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26185:569..1911-

>mRNA_H-paniculata_contig26185.7154.1 ID=mRNA_H-paniculata_contig26185.7154.1|Name=mRNA_H-paniculata_contig26185.7154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig26185:569..1911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAAACCCGAGGACTACAAAGGCGGGGGAGGGGACGCCGATAGCAA
ACGCGAATGCCAAGATACCGTTATGGACACCACCACCACCACCTCAATCG
CCGCGACTACCACTTCCATCACAACTCGTAGTACAAGTGTTGCAATGCTG
GAGTCCACCCTGCTGGGCTGGTCGGAGCGGCAGTCACACATCCTCTCGGG
AGCAGGACGCTCTAACGATCTCTATCGGAAGCCTCTGTTCCCGTTCAGCG
AGGAGGAGCTGCCGCACTATCACAAAGCCAGGGGATCGAGCCACGAGGTC
TTTCGGGAGTGGCGTAGACAGATGGGAAAACCCGAGGACTACAAAGGCGG
GGGAGGGGACGCCGATAGCAAACGCGAATGCCAAGATACCGTTATGGACA
CCACCACCACCACCTCAATCGCCGCGACTACCACTTCCATCACAACTCGT
AGTACAAGTGTTGCAATGCTGGAGTCCACCCTGCTGGGCTGGTCGGAGCG
GCAGTCACACATCCTCTCGGGAGCAGGACGCTCTAACGATCTCTATCGGA
AGCCTCTGTTCCCGTTCAGCGAGGAGGAGCTGCCGCACTATCACAAAGCC
AGGGGATCGAGCCACGAGGTCTTTCGGGAGTGGCGTAGACAGGGAAGCGG
GCTGGGCAAGACCATCGCCGGCGCATGGCGGAGACCGCTGTTTGTAGGGG
GCTGGACGCACTCGGACGACGCTTCACCGTTAACAGGGGAAACGACTTTC
AACTTGCAAACGCCGTCGGTGTTTCTGGACATGCGAGTGCCGAAAGCAGC
AGCCACTCGTCTGGGTCACCACCGAGGGTTCGAAACCATGACCGTAAGTA
CGTGAGGAAGCGGGCTGGGCAAGACCATCGCCGGCGCATGGCGGAGACCG
CTGTTTGTAGGGGGCTGGACGCACTCGGACGACGCTTCACCGTTAACAGG
GGAAACGACTTTCAACTTGCAAACGCCGTCGGTGTTTCTGGACATGCGAG
TGCCGAAAGCAGCAGCCACTCGTCTGGGTCACCACCGAGGGTTCGAAACC
ATGACCGTAAGTACGTGA
back to top