mRNA_H-paniculata_contig2616.7146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2616.7146.1
Unique NamemRNA_H-paniculata_contig2616.7146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2616.7146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2616contigH-paniculata_contig2616:5687..8997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size440
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.6690965-CDS-H-paniculata_contig2616:5686..59031622929781.6690965-CDS-H-paniculata_contig2616:5686..5903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2616 5687..5903 +
1691481008.0835736-CDS-H-paniculata_contig2616:5686..59031691481008.0835736-CDS-H-paniculata_contig2616:5686..5903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2616 5687..5903 +
1622929781.6865592-CDS-H-paniculata_contig2616:8775..89961622929781.6865592-CDS-H-paniculata_contig2616:8775..8996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2616 8776..8996 +
1691481008.093397-CDS-H-paniculata_contig2616:8775..89961691481008.093397-CDS-H-paniculata_contig2616:8775..8996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2616 8776..8996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2616.7146.1prot_H-paniculata_contig2616.7146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2616 5687..8996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2616.7146.1

>prot_H-paniculata_contig2616.7146.1 ID=prot_H-paniculata_contig2616.7146.1|Name=mRNA_H-paniculata_contig2616.7146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
PAGEKPSLFVLILWVGPCAPEHPHMKMEKISRAGALATAAFATLGLPLAP
SSCTCNMAAAFTTLTPIQGAEQAGVKRTRTNSFVRPLQPFRQGCAVAGAT
SRTHDSTSSSRCWGSLLLQHKYEYRSVRGGVEPVRAEHGAGDDGSG
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mRNA from alignment at H-paniculata_contig2616:5687..8997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2616.7146.1 ID=mRNA_H-paniculata_contig2616.7146.1|Name=mRNA_H-paniculata_contig2616.7146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3311bp|location=Sequence derived from alignment at H-paniculata_contig2616:5687..8997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCGGGCGAGAAACCCTCTCTCTTTGTCCTTATCCTGTGGGTCGGGCC
TTGTGCCCCAGAACACCCTCACATGAAGATGGAGAAGATTTCCAGAGCTG
GTGCACTGGCAACGGCTGCTTTCGCAACACTGGGTCTACCACTTGCGCCA
AGCTCTTGCACCTGCAACATGGCTGCCGCCTTCACGACTCTAACCCCAAT
TCAAGGCGCTGAGCAAGGTCTGTTGTCTTAGGTGACCATAAGGATCATAC
GATAGGGGTGTGCTGGTGCGTCAATGACCTATTTCTGATAGTAGAGGAAT
AGAGGCATGCAAGATTCATCAATCGTAGAGTAGTTTCTTCGCAAACGCGA
CAAGTAGCTCGTTGAAAGGAGAAAGTTGATTTGGAGTTGCTATTTAAACC
TGGCGAAGACTGGTGCTCGCCGCTGGTTGAATCATGCAAATTTGAGGCAC
AGCAGAAACATGTACCACGTAGTACATAGTGAATAGACGGCCTATCAGCC
ATGTTCAACTACTTTACAGTGCGCAATTTGCACTTGCTCTTAGTCTACCG
ATTGGGCTACCGTATATGCCACTACATCAAGCACTCTGGCAGTGCTGCTG
TCTTTTGGCGTGCGTGCACTGCTGCACTCACTGCCTAGGGAGAATATGGG
CCAAAAACCATGTGGCATGTAAACCTTATTACAGCGGAGTTGTCAGTGTT
TGGAGGAAGCCTGTGCTGGTATCTAAGTTTACAAGACATGCGGTCAGTGC
ACCACAATACTCTGTGAATCCACCAAACCGCTTAGTGCTGGTCTGGTGTT
TCCAACACCTACACCGCTTCAGTACGTACTAGTAGTGCAGTCACGGCTAC
TCCCACGCAGTATTTCCTAGACATTCGGTCAAAACCCATCACTCATGAAC
AAGGACGGGTTCGCTGGATTCGCATTCAAATCACCTTCAAGATTCGTTTT
TGCAAGTTACTCTAGTGCAGTTTCGAATAATTATTCCAAAATGATGATCC
TTCATCAGGCGCGTTTTTGAAAAACGGGGACACGGTGAACCGTGAAAAAT
ATTTTGTGTTCCACATTCACATTCAACAAAACCCGATAAACGATCTCTTC
CCAAAACCCAACAATAACCTCCCAAACCCCCAACCCAATAAGGTAATTTG
TTGTGTGCCAACAGTTGACAATTAGCGTTGCTAACGAAGACGAGTGTTTT
TGTCCAAACACTGTCTCCTGGATCTTTATTGGCTGTGTGATTGGGAACCA
TCCGCAAAAGAAAAAAATTGCACGCAGCCGACGCCTTCAACGAGTGAGTC
TTTACTTTATTGATGTACCAAAATGAAGTGTCAATTAATTAACTTTAGCA
CAGGGGGCGTTTCTGTTGACAGGTGCTCCCTCCACGCACTCCCGTGCGCA
TGCATGCAAGATCCATGTGTCGTATCGAAGATTTAAAATGTAGAGATGAA
TCAACTATCGAAAAGTTAGACAGGACAAGCCCCAGTTTTTCCCTGTTTTT
TTTTTTTCAAATCAGACGGCTGTTGCTGGCGCGTTATGGCCCCTCCTTAA
CACCCAACTAAAAGTAACGGTAGTGCTCTAACTTTGACCGAGATAGCGCA
CCAAGCCGCACTCGAAACCATTTGAGTCGGCGAAAAGATTGATTGTATCC
TCCGTGGGGTACAATGCATAAGTGAGAGCGTTCTTTGGCATTTTTCATGT
TGTTTGGCCAACCCACGAATTCAGTTTGCAAACCAGAACAACACAAAAAG
AGAACTGAAGTAGATGGTTAGGATTGCGCTGTAGAGGAAGAGCTCACAAG
AACTTGGAAAATCTATCGGACGCACAATGACGCGTTCTGATTGGCTGAAG
AATCACATGGTAAGGACTGTGAGTATATCTACAGTTATCCAAGGCTGTCA
CGGGACCGCGGGATCGCACGGGACGCGACAATGAGCTTCATGTATTACCA
CCACCCCCGCAGGAGACCTGTCTGGTCTTGCACTCAATAGCCAAGCCCGC
CGTCTCGTTTATTTTCATCGACTTTTGGTTCGGCAGGCTGTACAACACAC
TCCTTCGCTTCGCAACTTACCCGTAATGTAGCTTTATATTAATCCACGAG
GAATTTCTCACCTCGGGATTTCTTTTGTAGTGTTTAATCGTTAGGAGCAA
AGTTGATGTTTGTTTGCTCGTTGGCGCTATGCACTAAATCCAACATAAAG
CCCCCAAAACGGCAAAGACACGGACCCCGTTTAATCCTTTCGCCACTGAG
ATCCACTAACCAGCTATTTAGAGCTGGTGAAGGCAATATGTTGATGTATT
CGTCATTATCCACGACTGGCTATTAGCAAATCTCGCTTTTGGCCTTCTTG
ACGTCCGGCCCAAAAGGGTTATAACCATTTTTACAAAACTACAGGTGGTG
GAAGCACTCAAAGACGTATGCCCTTTCCCCCAATTATCTGTTAATCACGT
GGCAATATTCCGGTAGTTACCCCAGGACAATATTCAATATTATCACCTCG
TCCTGCGGATGACTTTGCTTTCTTTGTCAAACTCGATTATGTCGAAATGC
GATACCTTGCATTTTTGTCATACTCCCTAGAGCATGACTACTACTGCAGA
CATGTCTAAACGATATATTTCCAGTGACAAACTGCCCGTGTCAAGGACAC
CAGGTTTTTCGAAAAAATTAGGTTTCCTACAGTGGAGTAGTTATCACCAG
GGGAGGGTATCCCTGCAAAGTAGTGGTACGTGACCATGACAACAAGAAAA
TTCGTTCATGGTCTGAGCCCCCACGGGAGACCGAGACTCTTGAGCCGTAA
GCGCGCCCGTTGTAAATTATTGTATATAATTTATGATCATAGTGCAGCTG
CTAAAGAACACCTGGTCTGCATTGGACTGTAGTTTGTTGTGCTGAGTGTT
TTTTTTCTTTTTCGTACTCTGCAGTATTCTGCTGCTCCACTTGAAGAATA
GACTCACGGATTGTACAAAATGTCTGGTGACATTGAACCCTGGCGACTGA
TTGAATGGCATGCATCTTCACTCCGCTTGACTTCTGCACAATCCCCCACC
TCCCCCGTCCCCCCCACCTTTGCCCACCCGATAAAAAAGCGGGCGTCAAA
AGAACAAGAACAAATTCTTTCGTACGCCCCCTTCAGCCCTTTCGGCAAGG
CTGTGCTGTTGCTGGTGCCACCTCGAGAACGCATGATAGTACCAGTAGTA
GTAGGTGTTGGGGATCCCTGCTGCTCCAGCACAAGTACGAGTACCGGAGC
GTGAGGGGTGGAGTGGAACCAGTGCGGGCAGAGCATGGGGCGGGAGATGA
TGGCAGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2616:5687..8997+

>mRNA_H-paniculata_contig2616.7146.1 ID=mRNA_H-paniculata_contig2616.7146.1|Name=mRNA_H-paniculata_contig2616.7146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig2616:5687..8997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCGGGCGAGAAACCCTCTCTCTTTGTCCTTATCCTGTGGGTCGGGCC
TTGTGCCCCAGAACACCCTCACATGAAGATGGAGAAGATTTCCAGAGCTG
GTGCACTGGCAACGGCTGCTTTCGCAACACTGGGTCTACCACTTGCGCCA
AGCTCTTGCACCTGCAACATGGCTGCCGCCTTCACGACTCTAACCCCAAT
TCAAGGCGCTGAGCAAGCCAGCGGGCGAGAAACCCTCTCTCTTTGTCCTT
ATCCTGTGGGTCGGGCCTTGTGCCCCAGAACACCCTCACATGAAGATGGA
GAAGATTTCCAGAGCTGGTGCACTGGCAACGGCTGCTTTCGCAACACTGG
GTCTACCACTTGCGCCAAGCTCTTGCACCTGCAACATGGCTGCCGCCTTC
ACGACTCTAACCCCAATTCAAGGCGCTGAGCAAGCGGGCGTCAAAAGAAC
AAGAACAAATTCTTTCGTACGCCCCCTTCAGCCCTTTCGGCAAGGCTGTG
CTGTTGCTGGTGCCACCTCGAGAACGCATGATAGTACCAGTAGTAGTAGG
TGTTGGGGATCCCTGCTGCTCCAGCACAAGTACGAGTACCGGAGCGTGAG
GGGTGGAGTGGAACCAGTGCGGGCAGAGCATGGGGCGGGAGATGATGGCA
GCGGCCGGGCGTCAAAAGAACAAGAACAAATTCTTTCGTACGCCCCCTTC
AGCCCTTTCGGCAAGGCTGTGCTGTTGCTGGTGCCACCTCGAGAACGCAT
GATAGTACCAGTAGTAGTAGGTGTTGGGGATCCCTGCTGCTCCAGCACAA
GTACGAGTACCGGAGCGTGAGGGGTGGAGTGGAACCAGTGCGGGCAGAGC
ATGGGGCGGGAGATGATGGCAGCGGC
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