mRNA_H-paniculata_contig26147.7144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26147.7144.1
Unique NamemRNA_H-paniculata_contig26147.7144.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26147.7144.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.030e-11
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    4 DCIPTISLGSLYSLFRTVRRIDQLPLDVYQRARFVLDAQVRLQSRGQDL 150
            DC+PT+SLGSLYSL RT++ +D+LPLDVY+RA FVLD++VR+Q   Q L
Sbjct:  376 DCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGL 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26147.7144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ91_ECTSI1.030e-1165.31Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26147contigH-paniculata_contig26147:298..2784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D8LQ91
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size481
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.4877548-CDS-H-paniculata_contig26147:297..5021622929781.4877548-CDS-H-paniculata_contig26147:297..502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26147 298..502 +
1691481007.9923544-CDS-H-paniculata_contig26147:297..5021691481007.9923544-CDS-H-paniculata_contig26147:297..502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26147 298..502 +
1622929781.5015378-CDS-H-paniculata_contig26147:2510..27821622929781.5015378-CDS-H-paniculata_contig26147:2510..2782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26147 2511..2782 +
1691481008.0108836-CDS-H-paniculata_contig26147:2510..27821691481008.0108836-CDS-H-paniculata_contig26147:2510..2782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26147 2511..2782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26147.7144.1prot_H-paniculata_contig26147.7144.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26147 298..2782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26147.7144.1

>prot_H-paniculata_contig26147.7144.1 ID=prot_H-paniculata_contig26147.7144.1|Name=mRNA_H-paniculata_contig26147.7144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
YDCIPTISLGSLYSLFRTVRRIDQLPLDVYQRARFVLDAQVRLQSRGQDL
VVPDKKTQDGQGTVLVADRTASAEGAHSGEPRTVADGEKGSERKHNTAST
DVIAAGGDRPNFASLGDDTVACFVRDFSKAASRLYEDVGQAVTTAAGGGT
SAEVFLLKR
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mRNA from alignment at H-paniculata_contig26147:298..2784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26147.7144.1 ID=mRNA_H-paniculata_contig26147.7144.1|Name=mRNA_H-paniculata_contig26147.7144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2487bp|location=Sequence derived from alignment at H-paniculata_contig26147:298..2784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGATTGTATCCCAACTATTTCGCTGGGATCCTTGTACAGCCTATTCCG
AACGGTGCGTCGAATAGACCAGCTACCGCTCGACGTTTACCAGCGTGCGC
GGTTTGTCCTGGACGCACAAGTGCGACTCCAAAGCAGGGGGCAAGATCTA
GTTGTCCCGGACAAGAAGACTCAAGACGGGCAAGGTACAGTATTAGTAGC
CGACCGTACAAACGACTCTGTGACATAGTGGCGAGGCAATATAGACCGTA
CAGACGTTTCTGTGACATAGTGGCGAGACAAGATGGTCGCGTTCCCGAGA
TTGGATGTGCTGTAGATATTTCGAGTACAGCCCCTGTGCTACGAAAGACT
TATCGCCGCAGAAGAACTAGGGTCGAAATCCAACAGTCAGTGGGCCTAAA
ACCTCAACCTAACCCCCAGGCCGTGCGTGCGCTAGCAGGGCGCAAGCAAA
AATACACACCTATTAGATTGCCCTGAATAAATACAAAATAGTGAGCCTGC
GGTAGCGAAATGTCCCCCTGCCCCTGGACAAAAAGGAGCTGGAGTAGACT
CACATCTCTGCTGACAATTATGATATTTGCGCTTCTCAGATTTGCCATTA
GCACTGCGGTTATGGGTGGGATGGTTTTCCCAGTGCGCTTATATTCGTCT
ATATTCGTGTTGAAGAGGACCGAACCTTGACGCTGCAAACGTGTATAGTG
CTGGGTGTATGGAGTGACGAGCAACGCAGTTGCTGCTCGCTGAGATGGCT
TAAAGCGTTCAGCGAGATAGATACACCCTCTCTAGCACCGTTCATCTAGG
GCGGCTACAAAATTGGGTGCTCCCCCACAGCGCTACCACGTCTTCCCCAC
TCATTTTCCGTCCAAACTGTTACAATAGACAACGCATGGTGATGATGAAG
CCGCTGCCGAGATCCTCACCCTGCTTTTTATTTGTGTATCCGTTGCCGTC
GTTAGCCAGATAGATCCGCAAACCACGTCGTCAGACAAGCATCGTAAAGG
AAAACCGTCGCCAAGCGTGGACCCTCGTATTTTTTCATGTCCATTGCAAT
TGTTCGTGGGCCGATGCCATCTCTCGTTTGACTTTGTATTCAAGCGTGGT
ATGTCTTTATCTAGGGCGCGTGGCACCCCCCCCCCCCCCGCTCGATTCTT
CGGAATGTTTCACGGCAACCCTGATGATGGAATGGCATCTAAAGAGCACT
TTTTTGTCGACCTTTTTCGCACGTTCTTTTGTGTTTCGTACCATGATGGG
GAAGATACTCGTGCGAATTATTTTCAAGCCCTTCCGCCTCTAAGGGAGGC
AGTTCCTGATATAGTAATTTGTGTCCAAATCCGATCGTGTGTGTTTGTCC
TTTTTACCCTTTAAAAAAAACACATTTCAAGTAAAAATTTCCATTTTTCC
TTCTTGCAGTATAGATTCCAACTCTGCTTGTGCTTAACGTGGTCCAAGGG
CAATGGAAAAATCATGGGCGCTAGTCAACCCGCTATTTATTAACACTCGC
TTGTTTTCTTTCTTTCGTTCTTTCTTTTGTTGCACCCCTCATCGCCAACC
AATCATCCATCATATATATATATAATATGTGAAGAAGTCAAAATAACACC
GTTCGATTAACGTCTGATAAACAGGATTATCAGAATCACCAGTTAACCTT
CAAGTTTCTATCTGGATCCCACAAAAAATATAAACAATAAACAAGATAAA
AATAAAACGTAGTTGTTATGAGGCCTCACCTGTTTGTTGTTTTACCTGTG
TGTGACAAACCTTTTTTGAGTCGTTCGTGAATATGGTGATGCACATAATA
TGCGATACAGAGTACGTTGTAATCAATGAAATTATATATATATATTTTTT
TGTGTATACATACACAAAATTATCCTACGGTAGGAGCGGGGGGGGGGAAT
TTTTTAACGAAAGACGCTTCGCAAGAGGGTTGCGAAAAATAACGCGAATA
GAAACCATGTCAATTGCATCTGTTTGTGCATCCCTAAAGGTGCACAGTCC
ACGAGTTGAAATTTGAGTTCTGTTTAAGGGAGGGCAATAAATGCAAAAGA
AAAATAGAAATACCCAATCCCCTGCTCAAAGCGGCTCCTTCATTAAACAA
AGCGACCCCCCCCTACCGTAGGATGACTCCACAGTCACTGGGTTATGACC
AACCCTGGATATCACATTTCGCACGCATGATCCCAATCCAACACTCACAT
GTCCTTTCCTCAGGTACTGCTTCCGCAGAAGGGGCTCACTCGGGCGAGCC
CAGGACTGTGGCCGACGGCGAGAAGGGAAGCGAAAGGAAGCACAACACCG
CCTCCACCGATGTCATCGCTGCTGGCGGTGACAGGCCGAATTTCGCGAGC
CTAGGGGACGACACTGTCGCCTGCTTTGTGCGCGACTTTAGCAAGGCCGC
GAGCCGGCTTTACGAGGACGTCGGCCAGGCGGTCACTACTGCTGCTGGCG
GCGGAACGTCCGCTGAAGTGTTCCTTCTGAAGCGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig26147:298..2784+

>mRNA_H-paniculata_contig26147.7144.1 ID=mRNA_H-paniculata_contig26147.7144.1|Name=mRNA_H-paniculata_contig26147.7144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig26147:298..2784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGATTGTATCCCAACTATTTCGCTGGGATCCTTGTACAGCCTATTCCG
AACGGTGCGTCGAATAGACCAGCTACCGCTCGACGTTTACCAGCGTGCGC
GGTTTGTCCTGGACGCACAAGTGCGACTCCAAAGCAGGGGGCAAGATCTA
GTTGTCCCGGACAAGAAGACTCAAGACGGGCAAGGTACAGTATTAGTAGC
CGACCTACGATTGTATCCCAACTATTTCGCTGGGATCCTTGTACAGCCTA
TTCCGAACGGTGCGTCGAATAGACCAGCTACCGCTCGACGTTTACCAGCG
TGCGCGGTTTGTCCTGGACGCACAAGTGCGACTCCAAAGCAGGGGGCAAG
ATCTAGTTGTCCCGGACAAGAAGACTCAAGACGGGCAAGGTACAGTATTA
GTAGCCGACCGTACTGCTTCCGCAGAAGGGGCTCACTCGGGCGAGCCCAG
GACTGTGGCCGACGGCGAGAAGGGAAGCGAAAGGAAGCACAACACCGCCT
CCACCGATGTCATCGCTGCTGGCGGTGACAGGCCGAATTTCGCGAGCCTA
GGGGACGACACTGTCGCCTGCTTTGTGCGCGACTTTAGCAAGGCCGCGAG
CCGGCTTTACGAGGACGTCGGCCAGGCGGTCACTACTGCTGCTGGCGGCG
GAACGTCCGCTGAAGTGTTCCTTCTGAAGCGGGTACTGCTTCCGCAGAAG
GGGCTCACTCGGGCGAGCCCAGGACTGTGGCCGACGGCGAGAAGGGAAGC
GAAAGGAAGCACAACACCGCCTCCACCGATGTCATCGCTGCTGGCGGTGA
CAGGCCGAATTTCGCGAGCCTAGGGGACGACACTGTCGCCTGCTTTGTGC
GCGACTTTAGCAAGGCCGCGAGCCGGCTTTACGAGGACGTCGGCCAGGCG
GTCACTACTGCTGCTGGCGGCGGAACGTCCGCTGAAGTGTTCCTTCTGAA
GCGG
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