mRNA_H-paniculata_contig26112.7136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: D7FWB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB6_ECTSI) HSP 1 Score: 311 bits (796), Expect = 1.430e-94 Identity = 175/247 (70.85%), Postives = 194/247 (78.54%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAVAGKTGLAPGVSLLKLRRFLQHGQNGQPTAKADAASTEAQASSLSTVAGSTSNATRADGEGLDGVVLGSSAAIQQSVEDMHIEPPQYNNVTLFLGRLQCLPVKRQNLMFAYLTVSYD 741
ERE+FMSGKKKVAIISDAASTGVSLHA++GS +EGRRRLHITLELPWSADKAI QLGRSHRSNQ SAPVFRLLVTDLGGERRFAAAVAKR ASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSM+ A+ KTGLAPGV L+ LR F+Q G TA A A T + + + A E + + + A ++S+EDM IEP QYNNVTLFLGRLQ LPV+RQNLMF YLT + D
Sbjct: 629 ERELFMSGKKKVAIISDAASTGVSLHAAVGSGSEGRRRLHITLELPWSADKAIQQLGRSHRSNQASAPVFRLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMMMAIVTKTGLAPGVDLMTLRPFVQSGLL-MSTAPAAATPTPSSVNQGGATGAAGMMAEELGQEAKAEIKIAAMLAAERSLEDMAIEPAQYNNVTLFLGRLQGLPVQRQNLMFTYLTGTLD 874
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: A0A6H5JM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM72_9PHAE) HSP 1 Score: 300 bits (769), Expect = 5.170e-93 Identity = 168/243 (69.14%), Postives = 190/243 (78.19%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAVAGKTGLAPGVSLLKLRRFLQHGQNGQPTAKADAASTEAQASSLSTVAGSTSNATRADGEGLDGVVLGSSAAIQQSVEDMHIEPPQYNNVTLFLGRLQCLPVKRQNLMFAYLT 729
ERE+FMSGKK+VAIISDAASTGVSLH ++GS +EGRRRLHITLELPWSADKAI QLGRSHRSNQ SAPVFRLLVTDLGGERRFAAAVAKR ASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSM++A+ KTGL PGV L+ LR F+Q G+ TA A T + + + A + + + + A ++S+EDM IEP QY NVTLFLGRLQ LPV+RQNLMF YLT
Sbjct: 608 ERELFMSGKKRVAIISDAASTGVSLHTAVGSGSEGRRRLHITLELPWSADKAIQQLGRSHRSNQASAPVFRLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMMTAIVTKTGLTPGVDLMTLRPFVQSGRL-MSTAPVAATPTPSSDNEGGATGAAEMVAEELGQDAKAEIKIAAMLAAERSLEDMAIEPGQYTNVTLFLGRLQGLPVQRQNLMFTYLT 849
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: A0A835YXT2_9STRA (P-loop containing NTP hydrolase pore-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT2_9STRA) HSP 1 Score: 229 bits (583), Expect = 3.600e-65 Identity = 130/251 (51.79%), Postives = 166/251 (66.14%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAVAGKTGLAPGVSLLKLRRFLQ----HGQNGQPTAKADAASTEAQASSLSTVAGSTSNATRADGEGLDGVVLGSSAAIQQSVEDMHIEPPQYNNVTLFLGRLQCLPVKRQNLMFAYLTVSYD 741
ER+ FM+G+K VAIISDAASTG+SLHA++GS A RRR+HITLEL W+ADK+I QLGRSHRS+Q SAP+++LL+T+LGGERRFA+AVAKR SLGALTKGDRRAA+G D S+FDLD KYGR ALK++ +++ T LAPGV+L L ++ G+ + ADA +L A ++ +E M +E Y+NVT+FL RLQ LPV RQNL+FAY D
Sbjct: 556 ERKHFMAGRKHVAIISDAASTGISLHAAVGSGASNRRRVHITLELAWAADKSIQQLGRSHRSHQESAPLYKLLMTNLGGERRFASAVAKRLMSLGALTKGDRRAASGGDMSAFDLDNKYGRTALKTVCASLQTATALAPGVALASLAPYIGVRVIAGEADEDPGNADA-------------------------------LLKVLTAAKEGLEAMGLEQKNYSNVTMFLTRLQILPVARQNLLFAYFATRLD 775
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: F0YQ71_AURAN (Helicase_C_4 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ71_AURAN) HSP 1 Score: 184 bits (468), Expect = 9.670e-56 Identity = 95/124 (76.61%), Postives = 108/124 (87.10%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRAL 372
ER+ FM G+K VAIISDAASTGVSLHA+ GS A GRRR+HITLEL WSADK+I QLGRSHR+NQ SAPV++LL T+LGGE RFA+AVAKR ASLGALTKGDRRAA+G D S FDLDT++GR AL
Sbjct: 34 ERKAFMDGRKHVAIISDAASTGVSLHAARGSPAAGRRRVHITLELAWSADKSIQQLGRSHRANQESAPVYKLLTTNLGGEARFASAVAKRLASLGALTKGDRRAASGQDLSDFDLDTRHGRAAL 157
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: A0A1E7ENR2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENR2_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.870e-53 Identity = 92/121 (76.03%), Postives = 104/121 (85.95%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGR 363
ER FM GKK VAIISDAASTGVSLHA+ GS +RR+H T+ELPWSADKA+ QLGRSHRS Q SAPV++L+VT+LGGERRFAAAV+KR SLGALTKGDRRAATGAD S FDLD+KYG+
Sbjct: 69 ERRQFMDGKKSVAIISDAASTGVSLHAAHGSGGSHKRRVHYTIELPWSADKAVQQLGRSHRSGQSSAPVYKLVVTNLGGERRFAAAVSKRLMSLGALTKGDRRAATGADMSEFDLDSKYGK 189
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: A0A7R9ZUA6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZUA6_9STRA) HSP 1 Score: 190 bits (482), Expect = 8.880e-53 Identity = 95/131 (72.52%), Postives = 111/131 (84.73%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAV 393
ER +FM G K AIISDAASTGVSLHA+ GS A +RR+H T+ELPWSADKA+ QLGRSHRS Q SAP+++L+VT+LGGERRFAAAV+KR ASLGALTKGDRRAATG+D S FDLD+KYG+RALK A+
Sbjct: 24 ERRLFMDGSKSAAIISDAASTGVSLHAAFGSGASHKRRVHYTIELPWSADKAVQQLGRSHRSGQESAPIYKLVVTNLGGERRFAAAVSKRLASLGALTKGDRRAATGSDMSEFDLDSKYGKRALKRFYHAL 154
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: UPI001EB046A2 (protein FORGETTER 1-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB046A2) HSP 1 Score: 191 bits (486), Expect = 3.080e-52 Identity = 102/146 (69.86%), Postives = 118/146 (80.82%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAVAGKTGLAPGVSLLKL 438
ER MFM GKK VAIISDAASTG+SLHA M + A RRR+H+T+ELPWSADKA+ QLGRSHRSNQ S P+++LL T+LGGERRFAAAVA+R SLGALTKGDRRAATGAD + F+ DT YGR AL+SM + K L PGVSL K+
Sbjct: 289 ERNMFMEGKKLVAIISDAASTGISLHADMRA-ANQRRRVHLTVELPWSADKAVQQLGRSHRSNQSSGPLYKLLTTNLGGERRFAAAVARRLQSLGALTKGDRRAATGADLTEFNFDTPYGRSALRSMYHCICQKK-LVPGVSLSKM 432
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: A0A448ZC88_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC88_9STRA) HSP 1 Score: 192 bits (487), Expect = 3.390e-52 Identity = 97/131 (74.05%), Postives = 111/131 (84.73%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAV 393
ER+ FM G K AIISDAASTGVSLH + GSRA RRR+H T+ELPWSADKA+ QLGRSHRS Q SAP+++L+VT+LGGERRFAAAV+KR ASLGALTKGDRRAATGAD S FDLD+KYG+RALK A+
Sbjct: 802 ERQSFMDGTKPAAIISDAASTGVSLHTACGSRASHRRRVHYTIELPWSADKAVQQLGRSHRSGQESAPIYKLVVTNLGGERRFAAAVSKRLASLGALTKGDRRAATGADLSDFDLDSKYGKRALKRFYRAL 932
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: UPI00201F9852 (protein FORGETTER 1-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F9852) HSP 1 Score: 191 bits (486), Expect = 4.500e-52 Identity = 102/146 (69.86%), Postives = 118/146 (80.82%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAVAGKTGLAPGVSLLKL 438
ER MFM GKK VAIISDAASTG+SLHA M + A RRR+H+T+ELPWSADKA+ QLGRSHRSNQ S P+++LL T+LGGERRFAAAVA+R SLGALTKGDRRAATGAD + F+ DT YGR AL+SM + K L PGVSL K+
Sbjct: 590 ERNMFMEGKKLVAIISDAASTGISLHADMRA-ANQRRRVHLTVELPWSADKAVQQLGRSHRSNQSSGPLYKLLTTNLGGERRFAAAVARRLQSLGALTKGDRRAATGADLTEFNFDTPYGRSALRSMYHCICQKK-LVPGVSLSKM 733
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Match: A0A7S2M181_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M181_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.660e-51 Identity = 97/172 (56.40%), Postives = 125/172 (72.67%), Query Frame = 1
Query: 1 EREMFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIHQLGRSHRSNQRSAPVFRLLVTDLGGERRFAAAVAKRFASLGALTKGDRRAATGADFSSFDLDTKYGRRALKSMLSAVAGKTGLAPGV-SLLKLRRFLQHGQNGQPTAKADAASTEAQA 513
ER++FM GKK VAIISDAASTGVSLH+ ++ +RR+H T+ELPW+ADKAI QLGRSHRS Q SAP+++++V+DLGGERRFA+AV+KR A LGALTKGDRRAATG D S FD+D+ +GRRAL +A++ +P S L F+ H Q A+ + +T A A
Sbjct: 144 ERKLFMDGKKHVAIISDAASTGVSLHSDRRCKSSHKRRVHFTIELPWAADKAIQQLGRSHRSGQVSAPIYKMVVSDLGGERRFASAVSKRMAQLGALTKGDRRAATGTDLSEFDVDSIFGRRALAKFYTALSSTPYSSPSRNSNSVLDEFISHPQQPSDEARMETLATAANA 315 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26112.7136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26112.7136.1 >prot_H-paniculata_contig26112.7136.1 ID=prot_H-paniculata_contig26112.7136.1|Name=mRNA_H-paniculata_contig26112.7136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp MFMSGKKKVAIISDAASTGVSLHASMGSRAEGRRRLHITLELPWSADKAIback to top mRNA from alignment at H-paniculata_contig26112:3..3025+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26112.7136.1 ID=mRNA_H-paniculata_contig26112.7136.1|Name=mRNA_H-paniculata_contig26112.7136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3023bp|location=Sequence derived from alignment at H-paniculata_contig26112:3..3025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26112:3..3025+ >mRNA_H-paniculata_contig26112.7136.1 ID=mRNA_H-paniculata_contig26112.7136.1|Name=mRNA_H-paniculata_contig26112.7136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig26112:3..3025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |