mRNA_H-paniculata_contig26076.7121.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26076.7121.1
Unique NamemRNA_H-paniculata_contig26076.7121.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.460e-20
Identity = 43/100 (43.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVA+ +++ E+LFLRQV  F +P      + + E NQGA ++AHN  ++  + HIDV+HH +R+  E  ++++ +V +  +HAD LTKA+ + SF
Sbjct:    9 TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 108
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.080e-19
Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVAL ++V E++FLRQ+  F +P +    + I E NQGA +LA N  S+  + HIDV+HH +R+  E  +++V++V +  + AD LTK+L + SF
Sbjct:  117 TTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSF 216
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.240e-18
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVAL ++V E+LFLRQ+  F +P +    + + E NQGA +LA N  S+  + HIDV+HH +R+  E  +++V++V +  + AD LTK+L + +F
Sbjct:  101 TTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 200
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5JNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.270e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVA+ +++NE+LFLRQ+  F +P      + + E NQGA ++AHN   +  + HIDV+HH +R   E  ++++ +V T  +HAD LTKA+ + SF
Sbjct:  142 TTEAEYVAIADVLNEVLFLRQLWRFMLPDAGMPCIPVFEGNQGAIQIAHNPIVNSNSKHIDVRHHYIRGLVERKEISMTHVPTQFQHADFLTKAISKESF 241
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.630e-18
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVA+ +++ E+LFLRQV  F +P      + + E NQGA ++AHN  ++  + HIDV+HH +R+  E  ++++ +V T  +HAD LTKA+ + SF
Sbjct:  354 TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESF 453
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.820e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVA+ +++ E+LFLRQV  F +P      + + E NQGA ++AHN  ++  + HIDV+HH +R+  E  ++++  V T  +HAD LTKA+ + SF
Sbjct:  211 TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESF 310
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.010e-18
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVAL ++V E+LFLRQ+  F +P +    + + E NQGA +LA N  S+  + HIDV+HH +R+  E  +++V++V +  + AD LTK+L + +F
Sbjct:  146 TTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 245
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BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.210e-18
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVA+ +++ E+LFLRQV  F +P      + + E NQGA ++ HN  ++  + HIDV+HH +R+  E  ++++ +V T  +HAD LTKA+ + SF
Sbjct:  266 TTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESF 365
[Close]
BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.090e-18
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVA+ +++ E+LFLRQV  F +P      + + E NQGA ++AHN  +   + HIDV+HH +R+  E  ++++ +V +  +HAD LTKA+ + SF
Sbjct: 1321 TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFENNQGAIQIAHNPTTKSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 1420
[Close]
BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.810e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHNKDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF 300
            TTEAEYVAL E+V  +LFLRQ+  F +P +    + + E NQGA +LA N  S+  + HIDV+HH +R+  E  +++V++V +  + AD LTK+L + +F
Sbjct:  106 TTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26076.7121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE3.460e-2043.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE6.080e-1945.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE1.240e-1844.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNU8_9PHAE1.270e-1844.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD11_9PHAE1.630e-1844.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.820e-1844.00Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE2.010e-1844.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE2.210e-1843.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCK7_9PHAE3.090e-1843.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEZ8_9PHAE3.810e-1844.00Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26076contigH-paniculata_contig26076:103..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score71.2
Seed ortholog evalue3e-10
Seed eggNOG ortholog42374.XP_002416684.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.1879125-CDS-H-paniculata_contig26076:102..4021622929778.1879125-CDS-H-paniculata_contig26076:102..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26076 103..402 +
1691481006.767306-CDS-H-paniculata_contig26076:102..4021691481006.767306-CDS-H-paniculata_contig26076:102..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26076 103..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26076.7121.1prot_H-paniculata_contig26076.7121.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26076 103..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26076.7121.1

>prot_H-paniculata_contig26076.7121.1 ID=prot_H-paniculata_contig26076.7121.1|Name=mRNA_H-paniculata_contig26076.7121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
TTEAEYVALTEMVNELLFLRQVQAFTMPMLEHYPVIIKEYNQGAEELAHN
KDSSRRACHIDVKHHIVRDAAEAGKVNVVYVGTGQEHADVLTKALERTSF
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mRNA from alignment at H-paniculata_contig26076:103..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26076.7121.1 ID=mRNA_H-paniculata_contig26076.7121.1|Name=mRNA_H-paniculata_contig26076.7121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig26076:103..402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACAGAAGCCGAATACGTCGCGTTGACAGAGATGGTGAACGAATTACT
GTTTCTGCGCCAAGTACAAGCATTCACAATGCCAATGCTGGAACATTACC
CCGTAATAATTAAGGAATACAATCAAGGGGCCGAAGAGTTGGCCCATAAC
AAGGACAGCAGTCGGAGGGCGTGTCATATCGATGTGAAGCACCACATTGT
TCGCGATGCGGCTGAGGCTGGGAAGGTTAACGTAGTCTATGTGGGGACGG
GACAGGAGCACGCGGACGTACTCACGAAGGCGCTGGAGAGGACTTCTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig26076:103..402+

>mRNA_H-paniculata_contig26076.7121.1 ID=mRNA_H-paniculata_contig26076.7121.1|Name=mRNA_H-paniculata_contig26076.7121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig26076:103..402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACAGAAGCCGAATACGTCGCGTTGACAGAGATGGTGAACGAATTACT
GTTTCTGCGCCAAGTACAAGCATTCACAATGCCAATGCTGGAACATTACC
CCGTAATAATTAAGGAATACAATCAAGGGGCCGAAGAGTTGGCCCATAAC
AAGGACAGCAGTCGGAGGGCGTGTCATATCGATGTGAAGCACCACATTGT
TCGCGATGCGGCTGAGGCTGGGAAGGTTAACGTAGTCTATGTGGGGACGG
GACAGGAGCACGCGGACGTACTCACGAAGGCGCTGGAGAGGACTTCTTTT
ACAACAGAAGCCGAATACGTCGCGTTGACAGAGATGGTGAACGAATTACT
GTTTCTGCGCCAAGTACAAGCATTCACAATGCCAATGCTGGAACATTACC
CCGTAATAATTAAGGAATACAATCAAGGGGCCGAAGAGTTGGCCCATAAC
AAGGACAGCAGTCGGAGGGCGTGTCATATCGATGTGAAGCACCACATTGT
TCGCGATGCGGCTGAGGCTGGGAAGGTTAACGTAGTCTATGTGGGGACGG
GACAGGAGCACGCGGACGTACTCACGAAGGCGCTGGAGAGGACTTCTTTT
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