mRNA_H-paniculata_contig26067.7118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26067.7118.1
Unique NamemRNA_H-paniculata_contig26067.7118.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26067.7118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26067contigH-paniculata_contig26067:3053..3524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.8543856-CDS-H-paniculata_contig26067:3052..34391622929777.8543856-CDS-H-paniculata_contig26067:3052..3439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26067 3053..3439 +
1691481006.6742442-CDS-H-paniculata_contig26067:3052..34391691481006.6742442-CDS-H-paniculata_contig26067:3052..3439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26067 3053..3439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.865269-UTR-H-paniculata_contig26067:3439..35241622929777.865269-UTR-H-paniculata_contig26067:3439..3524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26067 3440..3524 +
1691481006.6849961-UTR-H-paniculata_contig26067:3439..35241691481006.6849961-UTR-H-paniculata_contig26067:3439..3524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26067 3440..3524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26067.7118.1prot_H-paniculata_contig26067.7118.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26067 3053..3439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26067.7118.1

>prot_H-paniculata_contig26067.7118.1 ID=prot_H-paniculata_contig26067.7118.1|Name=mRNA_H-paniculata_contig26067.7118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
ITSDASALTSDDSSISTRAPAVRATDSGADANASDAAVSSVAGNTPALLF
APHGASPARAGVRLDSPVSVAISISVHLKWGTRGRWGVTAVAQSRNDVVH
PLRKGALPAWVQGHEVFLYVRGDADSAI*
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mRNA from alignment at H-paniculata_contig26067:3053..3524+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26067.7118.1 ID=mRNA_H-paniculata_contig26067.7118.1|Name=mRNA_H-paniculata_contig26067.7118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=472bp|location=Sequence derived from alignment at H-paniculata_contig26067:3053..3524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTACCAGTGATGCGTCCGCACTCACTAGCGACGACTCCTCCATCTCCAC
CCGCGCTCCCGCTGTGAGGGCTACCGATTCCGGTGCCGACGCTAACGCTT
CCGACGCCGCCGTCAGCTCCGTTGCCGGCAACACTCCCGCTCTCCTCTTT
GCTCCCCACGGCGCATCTCCCGCCCGTGCCGGCGTCCGCCTCGATTCCCC
CGTCTCCGTCGCCATCTCTATATCCGTCCACCTGAAATGGGGTACCCGGG
GACGGTGGGGGGTCACCGCCGTTGCCCAGAGCCGCAATGACGTCGTGCAC
CCACTGCGCAAGGGTGCGCTCCCAGCCTGGGTGCAAGGCCACGAGGTATT
CTTGTACGTGAGGGGCGACGCAGATTCTGCCATTTGAGAAACGGAGAAGA
ACATGTACTGGTGTTGCGTGTACATGCTGGAACAGGGGGCGATACGCCGC
CACTACGTCGTCCCAAGGCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig26067:3053..3524+

>mRNA_H-paniculata_contig26067.7118.1 ID=mRNA_H-paniculata_contig26067.7118.1|Name=mRNA_H-paniculata_contig26067.7118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig26067:3053..3524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTACCAGTGATGCGTCCGCACTCACTAGCGACGACTCCTCCATCTCCAC
CCGCGCTCCCGCTGTGAGGGCTACCGATTCCGGTGCCGACGCTAACGCTT
CCGACGCCGCCGTCAGCTCCGTTGCCGGCAACACTCCCGCTCTCCTCTTT
GCTCCCCACGGCGCATCTCCCGCCCGTGCCGGCGTCCGCCTCGATTCCCC
CGTCTCCGTCGCCATCTCTATATCCGTCCACCTGAAATGGGGTACCCGGG
GACGGTGGGGGGTCACCGCCGTTGCCCAGAGCCGCAATGACGTCGTGCAC
CCACTGCGCAAGGGTGCGCTCCCAGCCTGGGTGCAAGGCCACGAGGTATT
CTTGTACGTGAGGGGCGACGCAGATTCTGCCATTTGAATTACCAGTGATG
CGTCCGCACTCACTAGCGACGACTCCTCCATCTCCACCCGCGCTCCCGCT
GTGAGGGCTACCGATTCCGGTGCCGACGCTAACGCTTCCGACGCCGCCGT
CAGCTCCGTTGCCGGCAACACTCCCGCTCTCCTCTTTGCTCCCCACGGCG
CATCTCCCGCCCGTGCCGGCGTCCGCCTCGATTCCCCCGTCTCCGTCGCC
ATCTCTATATCCGTCCACCTGAAATGGGGTACCCGGGGACGGTGGGGGGT
CACCGCCGTTGCCCAGAGCCGCAATGACGTCGTGCACCCACTGCGCAAGG
GTGCGCTCCCAGCCTGGGTGCAAGGCCACGAGGTATTCTTGTACGTGAGG
GGCGACGCAGATTCTGCCATTTGA
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