mRNA_H-paniculata_contig2605.7111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2605.7111.1
Unique NamemRNA_H-paniculata_contig2605.7111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2605.7111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2605contigH-paniculata_contig2605:3824..5844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.1750977-CDS-H-paniculata_contig2605:3823..38651622929777.1750977-CDS-H-paniculata_contig2605:3823..3865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 3824..3865 -
1691481006.4471238-CDS-H-paniculata_contig2605:3823..38651691481006.4471238-CDS-H-paniculata_contig2605:3823..3865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 3824..3865 -
1622929777.1949747-CDS-H-paniculata_contig2605:5379..58441622929777.1949747-CDS-H-paniculata_contig2605:5379..5844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 5380..5844 -
1691481006.4569862-CDS-H-paniculata_contig2605:5379..58441691481006.4569862-CDS-H-paniculata_contig2605:5379..5844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 5380..5844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2605.7111.1prot_H-paniculata_contig2605.7111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2605 3824..5844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2605.7111.1

>prot_H-paniculata_contig2605.7111.1 ID=prot_H-paniculata_contig2605.7111.1|Name=mRNA_H-paniculata_contig2605.7111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MPGGRNYIDDEPTAHSQRRRTLAIGGGAEHGTGNRGDGTADKAPMTKVTT
AAETVAAMGARCLVEERPPAGPQEPREAVATVAMRGTVLRQDSVPSRPPA
GRYISPMPRETSGEDNGLEIGGFRATLTPAAFQGLASGMRTPNVEAERNA
DLTEKARPMRSFDPHSSQH
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mRNA from alignment at H-paniculata_contig2605:3824..5844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2605.7111.1 ID=mRNA_H-paniculata_contig2605.7111.1|Name=mRNA_H-paniculata_contig2605.7111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2021bp|location=Sequence derived from alignment at H-paniculata_contig2605:3824..5844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGGAGGGCGAAACTACATTGACGACGAACCTACGGCTCACTCGCA
GAGGAGGAGGACTCTCGCTATTGGTGGGGGCGCTGAGCATGGAACTGGAA
ATCGCGGTGATGGTACCGCCGACAAGGCACCTATGACCAAGGTAACTACT
GCGGCGGAAACCGTAGCAGCCATGGGTGCGCGATGCCTAGTCGAGGAGCG
ACCTCCTGCGGGGCCGCAAGAGCCGAGGGAAGCAGTGGCGACGGTGGCGA
TGCGTGGTACAGTGTTGAGGCAGGATTCGGTGCCCTCTCGGCCGCCAGCC
GGGCGGTATATTTCTCCCATGCCGAGGGAGACGAGCGGCGAAGATAACGG
GCTAGAAATAGGAGGGTTCCGGGCGACGCTGACTCCTGCCGCGTTCCAGG
GCTTGGCCTCGGGAATGAGGACGCCTAATGTGGAGGCGGAGCGAAATGCG
GACCTCACGGAGAAGGTTAGAGGGGAGAGTGGCTGGCTGGCTTTGTGTGG
AACACAGAATTCTACAGCAGTACTAATGCGTTGCCTCGGCTCTTGACTAA
CGGTTCCCTACGCTTCACCGAAGCACGATTCGTGATTTAGAAATTTGTTG
CGTAGAGTAACGAAAACCGCTTCCGAAACGACGGCCACCGTACAGCGGGT
TTACCTCGCTGTGATAACGTTTATAGTTCAGTATTGTAAGCTGCAACGAT
AGCACCCTTCAATCAACAACTAGCGAAGACATCAGATCTCCCAGTTTACC
GTTTTTTCGAAGATTCTCTAAATAGGTGTTTGGTGGTTACGACACCCGCT
CGCCTTCTACATCATCGTATTCTACTGACGGGTACATCTCCATAGTCGAT
TGGTCAATAATATCTTCAAGGATAAGTTTGTGTACAAAAGTTTAGGTAGG
ACAATGAGTATCTGCTTACCGAATGCAATCACTTTCAGTCTTTTTCCGCG
CATTTAACTGCCGACACCGCTTAGCTGCAGTGTGTGATTGGCACTGTGGT
GCTGACATACGCTTCGTTAACTCACAATAGAGGCAAAACGCCTTTCAGTG
CAACACCGTACCAAAATCCGGCGCGTGGTTCCTACCTTTTTCCAGGGATG
TTCTCGTTTTTTTTTTGTGTACTTAACAAAACTACGTATAAAACAGGTTT
CATTAAGGAAAGCAGTGTTCTAAAAGTAAAACAAAAAAAAATACCGAGAA
CACTCTCGGGTTTTTCTGTTTATGATGAAATTATCTTGTGGGGGGGGGAA
AGTTACCAAACTTGATCGTGTCAACACACACGCAACTGCAGTACACAGCT
GCCTGTGGTTTTGGTCCATCCACTGCAAAAGTTGGTGTCTGGTTTGCCTT
TTAAACCCAGGAATATTCCTTCTGTACGGAAGCTCTGCAAGTTTCCTACC
CCCAATGTCTCTCTCTGTTTCCCACTCTCTCTTTTTCTCCACCTACCTAA
CTACGTACCAAATTACCTATCTACGTACCGCGAGTGATGGCGTTGATCCA
TAAACCCGAGCGTGGTACAGCTGTGGGAAAGCATATCAATTGCGCATAAA
TTTGTTTGGTCGATTATGCTAGAGTATGAGCAGATTGATTTTCGTAGTCT
AAACCGGAAGATATCTCAGTTGCATTCCGCCTCTTCTGGCGCGAACGCGG
ACCTAGTACCAAGGCAGACGTCTGCCTGAAAATTCACTACCCTAAAATGT
ACCAGGTATATGACATGATGTAACGTTAGGATTGTGGGAGACGAATCAGT
GTGTGTGTGAGCGTTTCTGGAGATCTCTTGGTGTTCCATTAAGCTGTTTT
TTTCGTGCGTTGATAAGTAGTACATCAGGCTATCCCTTTCCACGAGTTTT
GACCCATACATGTACATTGTTTCCTGTCACACTCATCCAACCCTCGACTG
TACCGTATATCCCACAACTCCCCCCCCCTATTCCGCTCGCGCACGCACCA
CTTTTCCCTCTTCTATTCCGACCATGAAGGCCCGACCTATGAGGTCATTC
GACCCTCACAGCTCTCAGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2605:3824..5844-

>mRNA_H-paniculata_contig2605.7111.1 ID=mRNA_H-paniculata_contig2605.7111.1|Name=mRNA_H-paniculata_contig2605.7111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig2605:3824..5844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGGAGGGCGAAACTACATTGACGACGAACCTACGGCTCACTCGCA
GAGGAGGAGGACTCTCGCTATTGGTGGGGGCGCTGAGCATGGAACTGGAA
ATCGCGGTGATGGTACCGCCGACAAGGCACCTATGACCAAGGTAACTACT
GCGGCGGAAACCGTAGCAGCCATGGGTGCGCGATGCCTAGTCGAGGAGCG
ACCTCCTGCGGGGCCGCAAGAGCCGAGGGAAGCAGTGGCGACGGTGGCGA
TGCGTGGTACAGTGTTGAGGCAGGATTCGGTGCCCTCTCGGCCGCCAGCC
GGGCGGTATATTTCTCCCATGCCGAGGGAGACGAGCGGCGAAGATAACGG
GCTAGAAATAGGAGGGTTCCGGGCGACGCTGACTCCTGCCGCGTTCCAGG
GCTTGGCCTCGGGAATGAGGACGCCTAATGTGGAGGCGGAGCGAAATGCG
GACCTCACGGAGAAGATGCCGGGAGGGCGAAACTACATTGACGACGAACC
TACGGCTCACTCGCAGAGGAGGAGGACTCTCGCTATTGGTGGGGGCGCTG
AGCATGGAACTGGAAATCGCGGTGATGGTACCGCCGACAAGGCACCTATG
ACCAAGGTAACTACTGCGGCGGAAACCGTAGCAGCCATGGGTGCGCGATG
CCTAGTCGAGGAGCGACCTCCTGCGGGGCCGCAAGAGCCGAGGGAAGCAG
TGGCGACGGTGGCGATGCGTGGTACAGTGTTGAGGCAGGATTCGGTGCCC
TCTCGGCCGCCAGCCGGGCGGTATATTTCTCCCATGCCGAGGGAGACGAG
CGGCGAAGATAACGGGCTAGAAATAGGAGGGTTCCGGGCGACGCTGACTC
CTGCCGCGTTCCAGGGCTTGGCCTCGGGAATGAGGACGCCTAATGTGGAG
GCGGAGCGAAATGCGGACCTCACGGAGAAGGCCCGACCTATGAGGTCATT
CGACCCTCACAGCTCTCAGCACGCCCGACCTATGAGGTCATTCGACCCTC
ACAGCTCTCAGCAC
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