mRNA_H-paniculata_contig2605.7110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2605.7110.1
Unique NamemRNA_H-paniculata_contig2605.7110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2605.7110.1 vs. uniprot
Match: D8LAV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.690e-22
Identity = 92/218 (42.20%), Postives = 111/218 (50.92%), Query Frame = 1 
Query:  259 DPFARSNRVAHTPTGLLSSNPSSCAVPESIAIAPPTAEAEAAAAVASGGEDNGHSGTCTNVSATEAMTMLDDSPGVEESPEITACKETVTVDGGQSAVAVVAQDPFASRSKLPRTPVEASSEVVEGPSTTDDERQDSDPTALGACERVDVGATGEGLAGAGPRTLLEAQLEIGELHLEVACMADRLAKQSDERNRLAEVAFKAQDEAASLRQKLEQHQ 912
            DPF RS ++A TPT      P+  AVP  +A A   AE  AA   A+ G    H          +A  +    PG E  PE       V V+G +S  A    DPFASRS +PRTP +  +   E       ER           ER D G  GEG          EA+L IGELH E+ACM DRL KQ++ERNRLA+VAF+AQDEA  LRQ+LEQ Q
Sbjct:  633 DPFVRSQKIARTPTR----GPAVGAVPRGVAPATDVAETAAADETAAAGVTTTHGAVAHGTQDGDADAV----PGTEIRPE--EATPEVGVEGERSPEAP-GGDPFASRSNIPRTPTDQVAPPRESFVQEGGER----------VERGDAGPMGEG----------EARLRIGELHQELACMTDRLTKQAEERNRLADVAFEAQDEAIKLRQQLEQFQ 819
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BLAST of mRNA_H-paniculata_contig2605.7110.1 vs. uniprot
Match: A0A6H5JU15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU15_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.080e-19
Identity = 85/218 (38.99%), Postives = 106/218 (48.62%), Query Frame = 1 
Query:  259 DPFARSNRVAHTPTGLLSSNPSSCAVPESIAIAPPTAEAEAAAAVASGGEDNGHSGTCTNVSATEAMTMLDDSPGVEESPEITACKETVTVDGGQSAVAVVAQDPFASRSKLPRTPVEASSEVVEGPSTTDDERQDSDPTALGACERVDVGATGEGLAGAGPRTLLEAQLEIGELHLEVACMADRLAKQSDERNRLAEVAFKAQDEAASLRQKLEQHQ 912
            DPF RS ++A TPT      P+  AVP  +A A   AE       A+ G    H     +    ++  +    PG E   E    +  V  +G   A A    DPFASRS +PRTP             TD      +  A    ER D G  GE           EA+L IGELH E+ACMADRL KQ++ERNRLA+VAF+AQDE   LRQ+LE+ Q
Sbjct:  617 DPFVRSQKIARTPTR----GPAVGAVPRGVAPATDVAEKAVVDETAASGVTATHGVVVGDTQDGDSDAV----PGTERRTEEATPEVGVEGEGSPEAPA---GDPFASRSNIPRTP-------------TDQVAPPRESLAQERGERGDAGPMGEE----------EARLRIGELHQELACMADRLTKQAEERNRLADVAFEAQDEVIKLRQQLEEFQ 800
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2605.7110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAV4_ECTSI1.690e-2242.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU15_9PHAE6.080e-1938.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2605contigH-paniculata_contig2605:1710..3379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006270.1
Exons2
Model size1033
Cds size1032
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.3268008-CDS-H-paniculata_contig2605:1709..18991622929777.3268008-CDS-H-paniculata_contig2605:1709..1899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 1710..1899 -
1691481006.4855232-CDS-H-paniculata_contig2605:1709..18991691481006.4855232-CDS-H-paniculata_contig2605:1709..1899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 1710..1899 -
1622929777.3384428-CDS-H-paniculata_contig2605:2537..33791622929777.3384428-CDS-H-paniculata_contig2605:2537..3379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 2538..3379 -
1691481006.497353-CDS-H-paniculata_contig2605:2537..33791691481006.497353-CDS-H-paniculata_contig2605:2537..3379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2605 2538..3379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2605.7110.1prot_H-paniculata_contig2605.7110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2605 1710..3379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2605.7110.1

>prot_H-paniculata_contig2605.7110.1 ID=prot_H-paniculata_contig2605.7110.1|Name=mRNA_H-paniculata_contig2605.7110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
ERVSVGVAATASDGDDGDARAGEEGDEDNESDMHVGVAETQPLSARVADI
GQDTGGTCVTTSASAASSSSSDSPAEGEEGKELGPEDPFARSNRVAHTPT
GLLSSNPSSCAVPESIAIAPPTAEAEAAAAVASGGEDNGHSGTCTNVSAT
EAMTMLDDSPGVEESPEITACKETVTVDGGQSAVAVVAQDPFASRSKLPR
TPVEASSEVVEGPSTTDDERQDSDPTALGACERVDVGATGEGLAGAGPRT
LLEAQLEIGELHLEVACMADRLAKQSDERNRLAEVAFKAQDEAASLRQKL
EQHQRQSNVDTSTSGRDEQQIENIDGHGTPMARGDGGGEGDGAA
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mRNA from alignment at H-paniculata_contig2605:1710..3379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2605.7110.1 ID=mRNA_H-paniculata_contig2605.7110.1|Name=mRNA_H-paniculata_contig2605.7110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1670bp|location=Sequence derived from alignment at H-paniculata_contig2605:1710..3379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGGTTTCTGTCGGGGTTGCTGCCACTGCTTCTGATGGTGATGATGG
TGATGCCAGGGCGGGGGAAGAGGGTGACGAGGATAATGAGAGTGATATGC
ATGTTGGAGTCGCTGAGACTCAACCGTTGTCGGCGAGGGTGGCTGACATC
GGCCAAGACACCGGGGGTACTTGTGTCACCACCTCTGCTTCCGCCGCGAG
CTCCAGCAGCAGTGACTCACCTGCGGAGGGAGAGGAGGGTAAAGAGTTAG
GGCCCGAAGACCCGTTCGCACGGTCAAACAGAGTTGCCCATACCCCGACA
GGACTCCTGTCCTCCAATCCATCGTCATGCGCAGTGCCCGAATCTATCGC
AATTGCGCCGCCGACTGCGGAAGCGGAAGCGGCGGCAGCGGTGGCATCGG
GTGGGGAGGACAATGGCCATAGTGGTACCTGTACTAATGTGTCTGCCACT
GAAGCGATGACTATGCTGGATGACTCGCCTGGAGTTGAAGAATCTCCGGA
GATTACAGCGTGCAAGGAAACTGTAACCGTCGACGGCGGCCAATCGGCAG
TGGCGGTGGTGGCACAGGACCCTTTCGCCAGCCGTAGCAAGCTACCTAGA
ACCCCAGTTGAGGCATCTTCCGAGGTGGTAGAAGGACCGTCGACGACTGA
TGATGAGAGACAGGACAGCGATCCTACTGCTCTAGGGGCGTGCGAGAGGG
TTGATGTGGGTGCCACCGGGGAGGGGCTAGCGGGAGCTGGGCCCAGGACC
TTGTTGGAGGCGCAGCTAGAGATTGGTGAACTGCACCTAGAGGTGGCGTG
CATGGCTGACCGCCTGGCTAAGCAAAGCGATGAGAGGAACAGGTGAGAGA
GACCCCAGGAGCGGCTGCGGGTATAGGGTTCTGTTTTTCCTTTTAGGGTA
CGTGCGGATAGGTGATGATGTTTAGCTCTCTTTTTTCACGAGGTTTGTTG
TGTGCAGTAGTTCGTTGGGCGTTCAGGGGCATTTGATTGAGCACGTAGTG
ATTGTGAATGAGCTTGATACACCGACAGAGTTGCTGCCACGCTTGTGAGA
TTCGGTCGATTTAGCATGCGATGCTCCTTGCCCTGGACAGTGGGAATGTG
GAGATCATTCTCACGTTGACTGCAGGGTGGCCTTAGCCGAACACGGTACT
GCTGGTGCTGGTGCTGGTGCTATTCTGGATGTCTCCGCGAGTGTTTTGTA
TTCTTAGCGTTCGATATCGTGCTCAAATACATCCACGGTATTGTTGACTG
ACTTTAAGTTTGGAGCGTGTTAAAGGAACGGTTTGACGAACCATCCGCGA
GAACGTATCATGATTTCCGAAAGTACGAGTGATTCGAACATAGACGAAAA
ATAGCCCAATAGAACCGCAGCAGTCCGAGAGTCCATTGCTGGCGCACTGG
CGTCAGTTCCAACGCCCCCCGGCCCTCCGCCCCTCTCGCTCCCCCCGCCC
ATCAATAATTTCCCGTCTCTGTGTAACCAGACTTGCCGAAGTAGCCTTCA
AAGCTCAGGACGAAGCGGCCAGTCTCCGCCAGAAACTGGAACAGCACCAG
CGACAAAGCAACGTTGACACATCGACCAGCGGCCGCGACGAACAACAAAT
CGAGAATATAGACGGTCACGGCACTCCGATGGCTCGTGGGGACGGCGGAG
GTGAGGGGGACGGGGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2605:1710..3379-

>mRNA_H-paniculata_contig2605.7110.1 ID=mRNA_H-paniculata_contig2605.7110.1|Name=mRNA_H-paniculata_contig2605.7110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig2605:1710..3379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGGTTTCTGTCGGGGTTGCTGCCACTGCTTCTGATGGTGATGATGG
TGATGCCAGGGCGGGGGAAGAGGGTGACGAGGATAATGAGAGTGATATGC
ATGTTGGAGTCGCTGAGACTCAACCGTTGTCGGCGAGGGTGGCTGACATC
GGCCAAGACACCGGGGGTACTTGTGTCACCACCTCTGCTTCCGCCGCGAG
CTCCAGCAGCAGTGACTCACCTGCGGAGGGAGAGGAGGGTAAAGAGTTAG
GGCCCGAAGACCCGTTCGCACGGTCAAACAGAGTTGCCCATACCCCGACA
GGACTCCTGTCCTCCAATCCATCGTCATGCGCAGTGCCCGAATCTATCGC
AATTGCGCCGCCGACTGCGGAAGCGGAAGCGGCGGCAGCGGTGGCATCGG
GTGGGGAGGACAATGGCCATAGTGGTACCTGTACTAATGTGTCTGCCACT
GAAGCGATGACTATGCTGGATGACTCGCCTGGAGTTGAAGAATCTCCGGA
GATTACAGCGTGCAAGGAAACTGTAACCGTCGACGGCGGCCAATCGGCAG
TGGCGGTGGTGGCACAGGACCCTTTCGCCAGCCGTAGCAAGCTACCTAGA
ACCCCAGTTGAGGCATCTTCCGAGGTGGTAGAAGGACCGTCGACGACTGA
TGATGAGAGACAGGACAGCGATCCTACTGCTCTAGGGGCGTGCGAGAGGG
TTGATGTGGGTGCCACCGGGGAGGGGCTAGCGGGAGCTGGGCCCAGGACC
TTGTTGGAGGCGCAGCTAGAGATTGGTGAACTGCACCTAGAGGTGGCGTG
CATGGCTGACCGCCTGGCTAAGCAAAGCGATGAGAGGAACAGGAGCGGGT
TTCTGTCGGGGTTGCTGCCACTGCTTCTGATGGTGATGATGGTGATGCCA
GGGCGGGGGAAGAGGGTGACGAGGATAATGAGAGTGATATGCATGTTGGA
GTCGCTGAGACTCAACCGTTGTCGGCGAGGGTGGCTGACATCGGCCAAGA
CACCGGGGGTACTTGTGTCACCACCTCTGCTTCCGCCGCGAGCTCCAGCA
GCAGTGACTCACCTGCGGAGGGAGAGGAGGGTAAAGAGTTAGGGCCCGAA
GACCCGTTCGCACGGTCAAACAGAGTTGCCCATACCCCGACAGGACTCCT
GTCCTCCAATCCATCGTCATGCGCAGTGCCCGAATCTATCGCAATTGCGC
CGCCGACTGCGGAAGCGGAAGCGGCGGCAGCGGTGGCATCGGGTGGGGAG
GACAATGGCCATAGTGGTACCTGTACTAATGTGTCTGCCACTGAAGCGAT
GACTATGCTGGATGACTCGCCTGGAGTTGAAGAATCTCCGGAGATTACAG
CGTGCAAGGAAACTGTAACCGTCGACGGCGGCCAATCGGCAGTGGCGGTG
GTGGCACAGGACCCTTTCGCCAGCCGTAGCAAGCTACCTAGAACCCCAGT
TGAGGCATCTTCCGAGGTGGTAGAAGGACCGTCGACGACTGATGATGAGA
GACAGGACAGCGATCCTACTGCTCTAGGGGCGTGCGAGAGGGTTGATGTG
GGTGCCACCGGGGAGGGGCTAGCGGGAGCTGGGCCCAGGACCTTGTTGGA
GGCGCAGCTAGAGATTGGTGAACTGCACCTAGAGGTGGCGTGCATGGCTG
ACCGCCTGGCTAAGCAAAGCGATGAGAGGAACAGACTTGCCGAAGTAGCC
TTCAAAGCTCAGGACGAAGCGGCCAGTCTCCGCCAGAAACTGGAACAGCA
CCAGCGACAAAGCAACGTTGACACATCGACCAGCGGCCGCGACGAACAAC
AAATCGAGAATATAGACGGTCACGGCACTCCGATGGCTCGTGGGGACGGC
GGAGGTGAGGGGGACGGGGCGGCGACTTGCCGAAGTAGCCTTCAAAGCTC
AGGACGAAGCGGCCAGTCTCCGCCAGAAACTGGAACAGCACCAGCGACAA
AGCAACGTTGACACATCGACCAGCGGCCGCGACGAACAACAAATCGAGAA
TATAGACGGTCACGGCACTCCGATGGCTCGTGGGGACGGCGGAGGTGAGG
GGGACGGGGCGGCG
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