mRNA_H-paniculata_contig25969.7083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25969.7083.1
Unique NamemRNA_H-paniculata_contig25969.7083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25969.7083.1 vs. uniprot
Match: D7FXW2_ECTSI (Phosphotransferase system component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.640e-19
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  202 AARRVKRVALVGSSGGGAAALGQFDAVSLLSLAKTELSEAGLQLSAVQFVACSEPLDTAAPDADTSLWVL---DGDRGLVVAARG 447
            AA   KRVALVGSSGGGAAA GQFD  +LL LAK EL  AG+ L+AVQFVAC+EPLD A P +  +LWV    +GD  LVVAA G
Sbjct:  222 AASFAKRVALVGSSGGGAAAQGQFDGPALLRLAKKELERAGIHLAAVQFVACAEPLDLANPSSAATLWVAGTGEGDEALVVAAEG 306
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BLAST of mRNA_H-paniculata_contig25969.7083.1 vs. uniprot
Match: A0A813JUU5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JUU5_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 9.170e-6
Identity = 42/101 (41.58%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:  217 KRVALVGSSGGGAAALGQFDAVSLLSLAKTELS---EAGLQLSAVQFVACSEPLDTAAPDADTSLWVLD-----GDRGLVVAARG--KHGRYRRIEENAQL 489
            +RVAL+GS+GGGAA LG  D  SL    + +L      G  ++   FVAC  PLD+A PD  +SLW L      G  GL    RG  +H   R  E +A L
Sbjct:    8 RRVALIGSTGGGAATLGHGDPDSLRLALERQLELVGGGGACVAEAVFVACDAPLDSARPDTPSSLWALSANGGKGAAGLHCVMRGPLEHVNVRARELDAAL 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25969.7083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW2_ECTSI2.640e-1964.71Phosphotransferase system component n=1 Tax=Ectoca... [more]
A0A813JUU5_POLGL9.170e-641.58Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25969contigH-paniculata_contig25969:1394..2885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7FXW2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0F2@1,2S7VP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size550
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.5858533-CDS-H-paniculata_contig25969:1393..16761622929773.5858533-CDS-H-paniculata_contig25969:1393..1676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 1394..1676 -
1691481004.9432976-CDS-H-paniculata_contig25969:1393..16761691481004.9432976-CDS-H-paniculata_contig25969:1393..1676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 1394..1676 -
1622929773.602106-CDS-H-paniculata_contig25969:2619..28851622929773.602106-CDS-H-paniculata_contig25969:2619..2885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 2620..2885 -
1691481004.9573038-CDS-H-paniculata_contig25969:2619..28851691481004.9573038-CDS-H-paniculata_contig25969:2619..2885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 2620..2885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25969.7083.1prot_H-paniculata_contig25969.7083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25969 1394..2885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25969.7083.1

>prot_H-paniculata_contig25969.7083.1 ID=prot_H-paniculata_contig25969.7083.1|Name=mRNA_H-paniculata_contig25969.7083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
ARDVWISEGVDAGSQARVPDSEQIDKRSRSRKGDGHVSQPGGNKNTNVGI
GMVDDGNEKRTPSESRHAARRVKRVALVGSSGGGAAALGQFDAVSLLSLA
KTELSEAGLQLSAVQFVACSEPLDTAAPDADTSLWVLDGDRGLVVAARGK
HGRYRRIEENAQLGFFRVFFVTQDIAHFYPKCC
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mRNA from alignment at H-paniculata_contig25969:1394..2885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25969.7083.1 ID=mRNA_H-paniculata_contig25969.7083.1|Name=mRNA_H-paniculata_contig25969.7083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-paniculata_contig25969:1394..2885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGAGATGTTTGGATAAGCGAAGGCGTCGATGCAGGCTCGCAAGCCCG
TGTGCCGGACAGCGAGCAGATTGACAAGCGCTCGAGAAGCAGAAAAGGAG
ATGGCCACGTCTCACAGCCCGGCGGTAACAAGAACACCAACGTGGGCATC
GGCATGGTCGACGATGGCAACGAAAAAAGGACTCCAAGCGAATCGAGACA
TGCCGCTCGCCGCGTGAAGCGGGTGGCTCTCGTCGGATCCAGCGGTGGGG
GAGCAGCCGCTTTGGGGTGAGACGATGAGATAGCTGCCGGCCGGAATCGC
TGCTTGCTGACGGTGTATAGTGTTCATACCAGCGAATAATTTGAGCATCT
TATCCAGGGCAAAACAGCTTTAAGGGAGCTCAAATTTTAACATTATCAAA
CAAATTAAGAGACACTTCTTCACTAAAATTAAATGTAGAAAAAGCGCATA
ACATCAAAATTCAAATTTCTCAAATTTTATATTTTAGTCAAAATCATAAA
AAAGTTGATATTTTTCCTACGGAGGACATTTTATTGCATATGAATGTGTT
AAAATTATTGTAATGTCATGGATCTGGATGACGCCACTTGGCCGACCGTG
GTATGTCAACCATTCAGATGATTCCTTTAAAAACGGCTGACACATGAGAA
AAATGTGGACACCTTTTCCCTCTCTGAGAGTCGAGCGAAAAATGGGCGTT
TGCTGTTATGGAGGACTGTTGTCAAGCGTTGTGCTGGGTGTGGGGCTGGG
TTCGCTCTTCCCACCGCTGACAAGGGGGAGTTAAAGGCGCAACGATATGT
GTATCGCGGATTATTTGCTGCCCAGTTGTTGTCGCCACGAGTGTAGTCGT
TGTCAACTGTTGCACGGTGTAGCAGCCACGCTATCGGCTACGAGTTATGG
CTGAACGTCAAAATACAGAGGAGATCTAGGAGATACCCGAACTACTTCGG
AAGTACCCGCTGCGTACTACCTGCTACTGCTGGCGCATCCGTTGACATGA
TAATAGAGCCCGGCTCCGGACACGTGCCAAACCACGTCTCCTGGTTTGCA
CACTGAATACCCACCACGCCTCCCTTGAACGCACAGCTAAGTTTACGAGC
TCAACCAAAACAGCGCAAAATCTTCTTCTCCCACGCTTTCTCACTGCGCT
GTCCCGTGCCTACTGCGTGCGATCTACCGCGGAACGACCGAACAACGATG
CCTGCCCAGGCAATTCGATGCGGTGTCGCTCTTGAGTCTAGCTAAGACCG
AGCTCAGCGAGGCTGGGCTGCAGCTATCGGCTGTACAATTCGTAGCTTGC
AGCGAACCGTTGGATACCGCTGCGCCGGACGCCGACACCTCTCTGTGGGT
GCTCGACGGAGATAGGGGCCTCGTCGTGGCTGCGCGCGGTAAGCATGGCC
GTTACAGAAGAATTGAAGAAAACGCACAGCTGGGTTTTTTCCGAGTTTTT
TTCGTGACTCAAGATATTGCGCATTTTTATCCGAAGTGCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig25969:1394..2885-

>mRNA_H-paniculata_contig25969.7083.1 ID=mRNA_H-paniculata_contig25969.7083.1|Name=mRNA_H-paniculata_contig25969.7083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig25969:1394..2885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGAGATGTTTGGATAAGCGAAGGCGTCGATGCAGGCTCGCAAGCCCG
TGTGCCGGACAGCGAGCAGATTGACAAGCGCTCGAGAAGCAGAAAAGGAG
ATGGCCACGTCTCACAGCCCGGCGGTAACAAGAACACCAACGTGGGCATC
GGCATGGTCGACGATGGCAACGAAAAAAGGACTCCAAGCGAATCGAGACA
TGCCGCTCGCCGCGTGAAGCGGGTGGCTCTCGTCGGATCCAGCGGTGGGG
GAGCAGCCGCTTTGGGGCGAGAGATGTTTGGATAAGCGAAGGCGTCGATG
CAGGCTCGCAAGCCCGTGTGCCGGACAGCGAGCAGATTGACAAGCGCTCG
AGAAGCAGAAAAGGAGATGGCCACGTCTCACAGCCCGGCGGTAACAAGAA
CACCAACGTGGGCATCGGCATGGTCGACGATGGCAACGAAAAAAGGACTC
CAAGCGAATCGAGACATGCCGCTCGCCGCGTGAAGCGGGTGGCTCTCGTC
GGATCCAGCGGTGGGGGAGCAGCCGCTTTGGGGCAATTCGATGCGGTGTC
GCTCTTGAGTCTAGCTAAGACCGAGCTCAGCGAGGCTGGGCTGCAGCTAT
CGGCTGTACAATTCGTAGCTTGCAGCGAACCGTTGGATACCGCTGCGCCG
GACGCCGACACCTCTCTGTGGGTGCTCGACGGAGATAGGGGCCTCGTCGT
GGCTGCGCGCGGTAAGCATGGCCGTTACAGAAGAATTGAAGAAAACGCAC
AGCTGGGTTTTTTCCGAGTTTTTTTCGTGACTCAAGATATTGCGCATTTT
TATCCGAAGTGCTGCGCAATTCGATGCGGTGTCGCTCTTGAGTCTAGCTA
AGACCGAGCTCAGCGAGGCTGGGCTGCAGCTATCGGCTGTACAATTCGTA
GCTTGCAGCGAACCGTTGGATACCGCTGCGCCGGACGCCGACACCTCTCT
GTGGGTGCTCGACGGAGATAGGGGCCTCGTCGTGGCTGCGCGCGGTAAGC
ATGGCCGTTACAGAAGAATTGAAGAAAACGCACAGCTGGGTTTTTTCCGA
GTTTTTTTCGTGACTCAAGATATTGCGCATTTTTATCCGAAGTGCTGC
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