mRNA_H-paniculata_contig25969.7081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25969.7081.1
Unique NamemRNA_H-paniculata_contig25969.7081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25969.7081.1 vs. uniprot
Match: D7FXW2_ECTSI (Phosphotransferase system component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW2_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.880e-13
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 QTFAAARDCGSPIVGTGGSSLGEAMAMGCLLVGSSGGSVATTNKSK 153
            + F AAR C +P+VGTGG+SLG A+AMGCLLVGSSGGSVATTNKSK
Sbjct:  371 EAFTAARGCRAPVVGTGGTSLGAALAMGCLLVGSSGGSVATTNKSK 416
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BLAST of mRNA_H-paniculata_contig25969.7081.1 vs. uniprot
Match: A0A6H5L9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.670e-13
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   22 FAAARDCGSPIVGTGGSSLGEAMAMGCLLVGSSGGSVATTNKSK 153
            F AAR C +P+VGTGG+SLG A+AMGCLLVGSSGGSVATTNKSK
Sbjct:   78 FTAARGCRAPVVGTGGTSLGSALAMGCLLVGSSGGSVATTNKSK 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25969.7081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW2_ECTSI4.880e-1378.26Phosphotransferase system component n=1 Tax=Ectoca... [more]
A0A6H5L9M4_9PHAE6.670e-1381.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25969contigH-paniculata_contig25969:177..329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D7FXW2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E0F2@1,2S7VP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.6511178-CDS-H-paniculata_contig25969:176..3291622929773.6511178-CDS-H-paniculata_contig25969:176..329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 177..329 -
1691481004.9688814-CDS-H-paniculata_contig25969:176..3291691481004.9688814-CDS-H-paniculata_contig25969:176..329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25969 177..329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25969.7081.1prot_H-paniculata_contig25969.7081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25969 177..329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25969.7081.1

>prot_H-paniculata_contig25969.7081.1 ID=prot_H-paniculata_contig25969.7081.1|Name=mRNA_H-paniculata_contig25969.7081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
PRFVRQTFAAARDCGSPIVGTGGSSLGEAMAMGCLLVGSSGGSVATTNKS
K
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mRNA from alignment at H-paniculata_contig25969:177..329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25969.7081.1 ID=mRNA_H-paniculata_contig25969.7081.1|Name=mRNA_H-paniculata_contig25969.7081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig25969:177..329- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGTTTTGTTAGACAAACGTTCGCTGCTGCTCGAGACTGTGGATCACC
TATTGTAGGCACGGGAGGCAGCTCGTTGGGAGAAGCTATGGCCATGGGCT
GCCTCTTGGTGGGGTCAAGTGGAGGTTCAGTCGCAACTACTAACAAATCG
AAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25969:177..329-

>mRNA_H-paniculata_contig25969.7081.1 ID=mRNA_H-paniculata_contig25969.7081.1|Name=mRNA_H-paniculata_contig25969.7081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig25969:177..329- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGTTTTGTTAGACAAACGTTCGCTGCTGCTCGAGACTGTGGATCACC
TATTGTAGGCACGGGAGGCAGCTCGTTGGGAGAAGCTATGGCCATGGGCT
GCCTCTTGGTGGGGTCAAGTGGAGGTTCAGTCGCAACTACTAACAAATCG
AAGCCTCGTTTTGTTAGACAAACGTTCGCTGCTGCTCGAGACTGTGGATC
ACCTATTGTAGGCACGGGAGGCAGCTCGTTGGGAGAAGCTATGGCCATGG
GCTGCCTCTTGGTGGGGTCAAGTGGAGGTTCAGTCGCAACTACTAACAAA
TCGAAG
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