mRNA_H-paniculata_contig25936.7076.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25936.7076.1
Unique NamemRNA_H-paniculata_contig25936.7076.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A6H5K1Z1_9PHAE (DHHA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 7.050e-37
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1
Query:    1 NVTRLAVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHHQDLAEHVNVQGNAR 282
            +V  + VMPIPR DLALRREVLVLFELC VDP+ +VF DELDL ALQA+GRLRLTL DHNAVSG L GLGDAVVEIVDHH DL EH +VQG+ R
Sbjct:  185 DVVHVPVMPIPRRDLALRREVLVLFELCDVDPSAIVFADELDLHALQAEGRLRLTLTDHNAVSGGLSGLGDAVVEIVDHHVDLGEHPSVQGSRR 278          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A835YL68_9STRA (DHHA2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL68_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-17
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 NVTRLAVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHHQDLAEHVNVQGNAR 282
            N   + V+ +PR DL LR++ ++L    GV    +VF DE+DL  + + GRL LTL DHNA+S  L  L  AV+EIVDHH DL +H +V G AR
Sbjct:   37 NPLYVPVISVPRGDLPLRQDAVLLLSRAGVGTDDMVFSDEVDLQGMHSSGRLCLTLTDHNALSSGLASLDSAVLEIVDHHSDLGQHSHVSGAAR 130          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A1N6UBE6_9SPIO (Inorganic diphosphatase n=1 Tax=Alkalispirochaeta americana TaxID=159291 RepID=A0A1N6UBE6_9SPIO)

HSP 1 Score: 83.6 bits (205), Expect = 6.030e-17
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   10 RLAVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHHQD 246
            R+ V+ IPR D  LR E + L    G+DPAL+ FIDE+DL+ L   GRL LTLVDHN ++G    L DAV EIVDHH D
Sbjct:   62 RIPVINIPRGDYKLRTEAVFLLRQAGIDPALLSFIDEIDLAGLHRAGRLELTLVDHNRLAGNQSDLADAVREIVDHHAD 140          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A1G3RRI8_9SPIR (Inorganic diphosphatase n=1 Tax=Spirochaetes bacterium RIFOXYC1_FULL_54_7 TaxID=1802198 RepID=A0A1G3RRI8_9SPIR)

HSP 1 Score: 76.3 bits (186), Expect = 2.730e-14
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   19 VMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHHQD 246
            V+ +PR D  LR E + LF+  G+D  L++F+DE+DL AL+A+GRL LTLVDHN ++     L   VVEI+DHH+D
Sbjct:   66 VINVPREDFKLRTEAVYLFKEAGIDIGLLLFMDEVDLGALKAKGRLMLTLVDHNKLASFQEQLAGCVVEIIDHHKD 141          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A6C1RL35_9SPIO (Inorganic diphosphatase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1RL35_9SPIO)

HSP 1 Score: 75.5 bits (184), Expect = 5.750e-14
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   19 VMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHHQD 246
            V+ IPRAD  LR E + LF   G+DPA ++F D+LDL AL   G L+LTLVDHN +S       D V  I+DHH+D
Sbjct:   97 VIDIPRADFKLRTEAVYLFAEAGIDPAQLLFADDLDLDALHTAGTLQLTLVDHNKLSAARQQFSDCVTGIIDHHKD 172          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A2D4C8W7_PYTIN (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8W7_PYTIN)

HSP 1 Score: 70.1 bits (170), Expect = 5.420e-12
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    4 VTRLAVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVS-----GPLGGLGDAVVEIVDHHQDLAEH 258
            V  + V+ IPR +L LR +V+ LFE  G+D + +VF+DE      Q    +RLTL+DHNA++          LG+ VVEI+DHH DL  H
Sbjct:  470 VIAVPVLSIPRDELPLRCDVMALFEALGIDASAMVFVDEFPWHRQQQLASMRLTLLDHNALTTKRMLAACDSLGECVVEILDHHTDLGXH 559          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A1V9ZVJ6_9STRA (DHHA2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVJ6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.420e-12
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   13 LAVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHHQDLAEHVNV 267
            L VM + R + ALR EV  LF    +D   +VF DE+DL A  A   L+L L DHN +      L  AV+EI+DHH DL  H +V
Sbjct:   64 LPVMSVNRCEFALRCEVSALFHAANIDIEALVFQDEIDLKAFHASNALKLILTDHNKLKQEYEALDSAVMEIIDHHDDLGAHTHV 148          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: A0A6A3V6H9_9STRA (DHH domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V6H9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   16 AVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGP-LGGLGDA-VVEIVDHHQDLAEHVNVQ 270
            AV+PIPRA+L LR +V  LF+  GVD   +VF+DE        +  +++TL+DHNA+S   +  L D  VVEIVDHH DL +H++ +
Sbjct:   79 AVLPIPRAELVLRCDVTALFQELGVDTHALVFVDEFPWGV---KSNVKVTLMDHNALSNKKIPQLNDLQVVEIVDHHSDLGQHLDAE 162          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: UPI00097DAD90 (protein prune homolog n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097DAD90)

HSP 1 Score: 65.9 bits (159), Expect = 2.140e-11
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   13 LAVMPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHH 240
            L +M I +++L LR +V+ L +  G+ P L++F D+LDL  L   GRL+LTLVDHN +      L  AVVE++DHH
Sbjct:   45 LPLMNIRQSELLLRSDVVFLLQQTGLSPELLMFRDQLDLRVLHRDGRLQLTLVDHNVLPSSDSDLEGAVVEVIDHH 120          
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Match: UPI001888A225 (exopolyphosphatase PRUNE1 isoform X1 n=3 Tax=Pungitius pungitius TaxID=134920 RepID=UPI001888A225)

HSP 1 Score: 67.4 bits (163), Expect = 4.490e-11
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   28 IPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLVDHNAVSGPLGGLGDAVVEIVDHH 240
            I +A+L LR + + L     +DP L++F D+LDL  L   GRLRLTLVDHN +  P G L  AVVE++DHH
Sbjct:   63 IRQAELPLRSDSVHLLRQVALDPELLLFRDQLDLRGLHRDGRLRLTLVDHNVLPRPDGDLEGAVVEVIDHH 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25936.7076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z1_9PHAE7.050e-3776.60DHHA2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YL68_9STRA1.700e-1747.87DHHA2 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A1N6UBE6_9SPIO6.030e-1755.70Inorganic diphosphatase n=1 Tax=Alkalispirochaeta ... [more]
A0A1G3RRI8_9SPIR2.730e-1451.32Inorganic diphosphatase n=1 Tax=Spirochaetes bacte... [more]
A0A6C1RL35_9SPIO5.750e-1451.32Inorganic diphosphatase n=1 Tax=Spirochaetaceae ba... [more]
A0A2D4C8W7_PYTIN5.420e-1243.33tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
A0A1V9ZVJ6_9STRA5.420e-1244.71DHHA2 domain-containing protein n=1 Tax=Thraustoth... [more]
A0A6A3V6H9_9STRA2.050e-1145.98DHH domain-containing protein n=3 Tax=Phytophthora... [more]
UPI00097DAD902.140e-1146.05protein prune homolog n=1 Tax=Paralichthys olivace... [more]
UPI001888A2254.490e-1150.70exopolyphosphatase PRUNE1 isoform X1 n=3 Tax=Pungi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25936contigH-paniculata_contig25936:2548..3393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue6e-31
Seed eggNOG ortholog2880.D8LQ18
Preferred namePRUNE2
KEGG rclassRC00002
KEGG koko:K01230,ko:K01514,ko:K18449
KEGG ReactionR03409,R05982,R06722
KEGG Pathwayko00230,ko00510,ko00513,ko01100,ko04141,map00230,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004309,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006112,GO:0006793,GO:0006797,GO:0006798,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0015980,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.pyrophosphatase activity
EggNOG OGsCOG1227@1,KOG4129@2759
EC3.2.1.113,3.6.1.11
COG Functional cat.C
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size282
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25936.7076.1prot_H-paniculata_contig25936.7076.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25936 2548..3372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.1633055-CDS-H-paniculata_contig25936:2547..26881622929773.1633055-CDS-H-paniculata_contig25936:2547..2688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25936 2548..2688 -
1691481004.7535312-CDS-H-paniculata_contig25936:2547..26881691481004.7535312-CDS-H-paniculata_contig25936:2547..2688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25936 2548..2688 -
1622929773.1862922-CDS-H-paniculata_contig25936:3252..33721622929773.1862922-CDS-H-paniculata_contig25936:3252..3372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25936 3253..3372 -
1691481004.7650564-CDS-H-paniculata_contig25936:3252..33721691481004.7650564-CDS-H-paniculata_contig25936:3252..3372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25936 3253..3372 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.1990342-UTR-H-paniculata_contig25936:3372..33931622929773.1990342-UTR-H-paniculata_contig25936:3372..3393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25936 3373..3393 -
1691481004.7741368-UTR-H-paniculata_contig25936:3372..33931691481004.7741368-UTR-H-paniculata_contig25936:3372..3393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25936 3373..3393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25936.7076.1

>prot_H-paniculata_contig25936.7076.1 ID=prot_H-paniculata_contig25936.7076.1|Name=mRNA_H-paniculata_contig25936.7076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MPIPRADLALRREVLVLFELCGVDPALVVFIDELDLSALQAQGRLRLTLV
DHNAVSGPLGGLGDAVVEIVDHHQDLAEHVNVQGNAR
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mRNA from alignment at H-paniculata_contig25936:2548..3393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25936.7076.1 ID=mRNA_H-paniculata_contig25936.7076.1|Name=mRNA_H-paniculata_contig25936.7076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=846bp|location=Sequence derived from alignment at H-paniculata_contig25936:2548..3393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTCACTCGTCTTGCAGTCATGCCCATTCCCCGAGCAGACCTAGCGCT CAGGCGAGAGGTGCTGGTGTTATTCGAGCTGTGTGGGGTGGATCCAGCTC TGGTGGTGTTCATCGACGAGTTAGATCTGTCGGCGCTTCAGGTGAAGAGT CAGAAAAACACGACCACAGAGAGAGGCCAAGACGGGGGTGGGGGTACTTG TGATTGCGTAGACCATAGTCAGGAGGGCAGAGGGCCGCGAACCTCGCATG CCTGCTTACAGTGCCGAGTCTTATTGAGTGGCTGTTCAAAAATAGACTCT TGTTATAATTTTACTCCACAAAGCTGGGATTCTAAAATTCGCTTAGGGTC AAAATGTGTGGATTCTGAGAATCACTTGGATAACGTACAGAGCGTAAGAA TAAACACTTTAAATGAAGTAGGGAAACGATTGAGAGACGATAATCACCAT TACTCTGTCGTTCTGTATATGCAATGGATCAGGACCTACCTCATAGCGTT GATTGCGTTCCACTAAAAGGGCGCAGAGTCGGGTAGTATGGCGATTCGAA AAACGTTGGAACATGACTTAATTTTACAGAATACAAAATGTGGCGAAATC AGCAAACAAACCATAAAAATGCTCAAGTGGCTTTAAAAACACTAGAACCA CCAGTTCGATATCAGCAACTTGAGAACAATCGTTCATTGTATTTTTTATT GGCAGGCACAGGGTCGCCTTCGCCTGACCCTAGTCGATCACAACGCTGTG TCGGGGCCCCTCGGCGGTTTGGGTGATGCAGTGGTCGAGATCGTGGACCA CCACCAGGACTTGGCTGAGCATGTCAACGTCCAAGGGAACGCCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig25936:2548..3393-

>mRNA_H-paniculata_contig25936.7076.1 ID=mRNA_H-paniculata_contig25936.7076.1|Name=mRNA_H-paniculata_contig25936.7076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig25936:2548..3393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCATTCCCCGAGCAGACCTAGCGCTCAGGCGAGAGGTGCTGGTGTT
ATTCGAGCTGTGTGGGGTGGATCCAGCTCTGGTGGTGTTCATCGACGAGT
TAGATCTGTCGGCGCTTCAGATGCCCATTCCCCGAGCAGACCTAGCGCTC
AGGCGAGAGGTGCTGGTGTTATTCGAGCTGTGTGGGGTGGATCCAGCTCT
GGTGGTGTTCATCGACGAGTTAGATCTGTCGGCGCTTCAGGCACAGGGTC
GCCTTCGCCTGACCCTAGTCGATCACAACGCTGTGTCGGGGCCCCTCGGC
GGTTTGGGTGATGCAGTGGTCGAGATCGTGGACCACCACCAGGACTTGGC
TGAGCATGTCAACGTCCAAGGGAACGCCAGGGCACAGGGTCGCCTTCGCC
TGACCCTAGTCGATCACAACGCTGTGTCGGGGCCCCTCGGCGGTTTGGGT
GATGCAGTGGTCGAGATCGTGGACCACCACCAGGACTTGGCTGAGCATGT
CAACGTCCAAGGGAACGCCAGG
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