mRNA_H-paniculata_contig259.7060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig259.7060.1
Unique NamemRNA_H-paniculata_contig259.7060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig259.7060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig259contigH-paniculata_contig259:42891..43372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig259.7060.1prot_H-paniculata_contig259.7060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig259 43006..43311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.604394-UTR-H-paniculata_contig259:42890..430051622929770.604394-UTR-H-paniculata_contig259:42890..43005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig259 42891..43005 +
1691481003.7498076-UTR-H-paniculata_contig259:42890..430051691481003.7498076-UTR-H-paniculata_contig259:42890..43005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig259 42891..43005 +
1622929770.6396027-UTR-H-paniculata_contig259:43311..433721622929770.6396027-UTR-H-paniculata_contig259:43311..43372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig259 43312..43372 +
1691481003.7673738-UTR-H-paniculata_contig259:43311..433721691481003.7673738-UTR-H-paniculata_contig259:43311..43372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig259 43312..43372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.6230633-CDS-H-paniculata_contig259:43005..433111622929770.6230633-CDS-H-paniculata_contig259:43005..43311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig259 43006..43311 +
1691481003.7596402-CDS-H-paniculata_contig259:43005..433111691481003.7596402-CDS-H-paniculata_contig259:43005..43311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig259 43006..43311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig259.7060.1

>prot_H-paniculata_contig259.7060.1 ID=prot_H-paniculata_contig259.7060.1|Name=mRNA_H-paniculata_contig259.7060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MLRNLALAVSAGSTPPNGSSRPGGLPVGGRLSSSESKIVILALLTGPDCR
PSLPADGSSSLARRDLPERRCQALTVIRPRSFLHGHTRPPRAAVPQLAVR
C*
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mRNA from alignment at H-paniculata_contig259:42891..43372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig259.7060.1 ID=mRNA_H-paniculata_contig259.7060.1|Name=mRNA_H-paniculata_contig259.7060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=482bp|location=Sequence derived from alignment at H-paniculata_contig259:42891..43372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGACTCAATGCCAGGGAACCTCCGCTCCATGAGTACGTACTCTACTG
GTGGTATAGCCCTGGCGTTGTCGTAGGGCTGTGCCCTTTGGGCCGCGAGA
GCTCCAGTCCCCGATATGCTGCGGAATCTCGCTTTAGCCGTGTCAGCCGG
CTCGACCCCTCCGAATGGGTCATCTAGGCCAGGTGGCCTACCGGTCGGGG
GTAGGTTGTCAAGCAGCGAGAGCAAGATCGTTATCTTGGCCTTGTTGACT
GGACCAGATTGCCGACCTTCCCTTCCAGCCGACGGAAGTTCCTCCCTGGC
GCGTCGTGACCTCCCAGAACGTCGATGTCAGGCGTTGACAGTGATCCGCC
CTCGCTCCTTCCTCCATGGGCACACGCGACCACCCCGAGCGGCAGTACCG
CAGCTTGCTGTTCGGTGCTAACTCCTCCCTGTTCTGCCAAAACGCGGAGA
TTTGCTCGCCGATGAGCGCACCATTGGTGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig259:42891..43372+

>mRNA_H-paniculata_contig259.7060.1 ID=mRNA_H-paniculata_contig259.7060.1|Name=mRNA_H-paniculata_contig259.7060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig259:42891..43372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCGGAATCTCGCTTTAGCCGTGTCAGCCGGCTCGACCCCTCCGAA
TGGGTCATCTAGGCCAGGTGGCCTACCGGTCGGGGGTAGGTTGTCAAGCA
GCGAGAGCAAGATCGTTATCTTGGCCTTGTTGACTGGACCAGATTGCCGA
CCTTCCCTTCCAGCCGACGGAAGTTCCTCCCTGGCGCGTCGTGACCTCCC
AGAACGTCGATGTCAGGCGTTGACAGTGATCCGCCCTCGCTCCTTCCTCC
ATGGGCACACGCGACCACCCCGAGCGGCAGTACCGCAGCTTGCTGTTCGG
TGCTAAATGCTGCGGAATCTCGCTTTAGCCGTGTCAGCCGGCTCGACCCC
TCCGAATGGGTCATCTAGGCCAGGTGGCCTACCGGTCGGGGGTAGGTTGT
CAAGCAGCGAGAGCAAGATCGTTATCTTGGCCTTGTTGACTGGACCAGAT
TGCCGACCTTCCCTTCCAGCCGACGGAAGTTCCTCCCTGGCGCGTCGTGA
CCTCCCAGAACGTCGATGTCAGGCGTTGACAGTGATCCGCCCTCGCTCCT
TCCTCCATGGGCACACGCGACCACCCCGAGCGGCAGTACCGCAGCTTGCT
GTTCGGTGCTAA
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