mRNA_H-paniculata_contig25881.7054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25881.7054.1
Unique NamemRNA_H-paniculata_contig25881.7054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.150e-29
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLREED 177
            LNKIM WLEECEITYTQTAKPWNWKAMM DIR DNRFYLDT EDGE+KPAGWARLREED
Sbjct:  890 LNKIMQWLEECEITYTQTAKPWNWKAMMADIRGDNRFYLDTYEDGERKPAGWARLREED 948
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.250e-15
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDT-----DEDGEKKPAGWARLREED 177
            LN+IM WL +  ITYTQT K WNWKA++  +R D RFYLDT      EDG KKPAGW  LR +D
Sbjct:  697 LNQIMGWLVDSSITYTQTDKTWNWKAVLNLVREDERFYLDTGKSTEQEDGTKKPAGWTFLRMQD 760
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: A0A484E5A2_BRELC (FACT complex subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5A2_BRELC)

HSP 1 Score: 70.1 bits (170), Expect = 7.540e-12
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLR 168
            L +I  WL++ +I +T      NWK++M  I+SDNRFYLDTDEDG  KPAGW  L+
Sbjct:  653 LERIKEWLDDIDICFTTGTANLNWKSIMSTIKSDNRFYLDTDEDGVPKPAGWEFLK 708
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: D8LVG5_BLAHO (FACT complex subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LVG5_BLAHO)

HSP 1 Score: 70.1 bits (170), Expect = 7.610e-12
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLREE 174
            ++KI  WL+   IT+T++A  +NWK  M  +R  +RF++DTDEDG+KKP GW  L E+
Sbjct:  694 MDKIKEWLDSINITFTESATCYNWKEFMNAVRDYDRFWMDTDEDGQKKPIGWETLTED 751
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: A0A024G600_9STRA (FACT complex subunit n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G600_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLREE 174
            L +I  WL++ +I +T      NWK++M  I++DNRFYLDTDEDG  KPAGW  L+ E
Sbjct:  945 LERIKEWLDDIDICFTSGTANLNWKSIMATIKADNRFYLDTDEDGVPKPAGWEFLKME 1002
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: A0A0N7L4C5_PLAHL (FACT complex subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4C5_PLAHL)

HSP 1 Score: 69.7 bits (169), Expect = 1.080e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLREE 174
            L +I  WL++ +I +T      NWK++M  I+SDNRFYLDTD+DG  KPAGW  L+ E
Sbjct:  924 LERIKEWLDDIDICFTTGTANLNWKSIMSTIKSDNRFYLDTDDDGVPKPAGWEFLKME 981
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: F0WM38_9STRA (FACT complex subunit n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM38_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.080e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLREE 174
            L +I  WL++ +I +T      NWK++M  I++DNRFYLDTDEDG  KPAGW  L+ E
Sbjct: 1947 LERIKEWLDDIDICFTSGTANLNWKSIMATIKADNRFYLDTDEDGVPKPAGWEFLKME 2004
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: F0YPC0_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPC0_AURAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.580e-11
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLREED 177
            L+ I  WL +C +TYT      +WK++M  +RSD+RFY +TDE+GE KPAGW  L+ +D
Sbjct:  230 LDAIQEWLTDCSLTYTAGQASMSWKSVMNLVRSDDRFYEETDENGEPKPAGWQFLQADD 288
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BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: A0A067CG51_SAPPC (FACT complex subunit n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CG51_SAPPC)

HSP 1 Score: 68.2 bits (165), Expect = 3.660e-11
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLR 168
            L +I  WL++ +I +T+     NWK +M  I+SD+RFYLDTDEDG  KPAGW  L+
Sbjct:  892 LERIKEWLDDIDICFTEGTANLNWKQIMATIKSDDRFYLDTDEDGVPKPAGWEFLK 947
[Close]
BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Match: T0QTN4_SAPDV (FACT complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QTN4_SAPDV)

HSP 1 Score: 68.2 bits (165), Expect = 3.660e-11
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 LNKIMSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWARLR 168
            L +I  WL++ +I +T+     NWK +M  I+SD+RFYLDTDEDG  KPAGW  L+
Sbjct:  905 LERIKEWLDDIDICFTEGTANLNWKQIMATIKSDDRFYLDTDEDGVPKPAGWEFLK 960
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25881.7054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI1.150e-2991.53FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA1.250e-1559.38FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A484E5A2_BRELC7.540e-1253.57FACT complex subunit n=1 Tax=Bremia lactucae TaxID... [more]
D8LVG5_BLAHO7.610e-1248.28FACT complex subunit n=1 Tax=Blastocystis hominis ... [more]
A0A024G600_9STRA1.060e-1151.72FACT complex subunit n=1 Tax=Albugo candida TaxID=... [more]
A0A0N7L4C5_PLAHL1.080e-1151.72FACT complex subunit n=1 Tax=Plasmopara halstedii ... [more]
F0WM38_9STRA1.080e-1151.72FACT complex subunit n=1 Tax=Albugo laibachii Nc14... [more]
F0YPC0_AURAN1.580e-1149.15FACT complex subunit n=1 Tax=Aureococcus anophagef... [more]
A0A067CG51_SAPPC3.660e-1151.79FACT complex subunit n=1 Tax=Saprolegnia parasitic... [more]
T0QTN4_SAPDV3.660e-1151.79FACT complex subunit n=2 Tax=Saprolegniaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25881contigH-paniculata_contig25881:651..1492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.1e-23
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size309
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25881.7054.1prot_H-paniculata_contig25881.7054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25881 651..1480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.929848-CDS-H-paniculata_contig25881:650..8041622929769.929848-CDS-H-paniculata_contig25881:650..804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25881 651..804 -
1691481003.4707615-CDS-H-paniculata_contig25881:650..8041691481003.4707615-CDS-H-paniculata_contig25881:650..804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25881 651..804 -
1622929769.9507961-CDS-H-paniculata_contig25881:1337..14801622929769.9507961-CDS-H-paniculata_contig25881:1337..1480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25881 1338..1480 -
1691481003.4934611-CDS-H-paniculata_contig25881:1337..14801691481003.4934611-CDS-H-paniculata_contig25881:1337..1480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25881 1338..1480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.970909-UTR-H-paniculata_contig25881:1480..14921622929769.970909-UTR-H-paniculata_contig25881:1480..1492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25881 1481..1492 -
1691481003.5057054-UTR-H-paniculata_contig25881:1480..14921691481003.5057054-UTR-H-paniculata_contig25881:1480..1492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25881 1481..1492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25881.7054.1

>prot_H-paniculata_contig25881.7054.1 ID=prot_H-paniculata_contig25881.7054.1|Name=mRNA_H-paniculata_contig25881.7054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MSWLEECEITYTQTAKPWNWKAMMQDIRSDNRFYLDTDEDGEKKPAGWAR
LREEDSDDEEDDGDGESDFEAESESESEDDDDSEEDSDDDDDDDDDSEE
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mRNA from alignment at H-paniculata_contig25881:651..1492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25881.7054.1 ID=mRNA_H-paniculata_contig25881.7054.1|Name=mRNA_H-paniculata_contig25881.7054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig25881:651..1492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAACAAGATCATGTCTTGGCTGGAGGAGTGTGAGATCACGTACACGCA
GACAGCCAAGCCGTGGAACTGGAAGGCCATGATGCAGGACATCCGCTCTG
ATAACCGATTTTACCTCGACACGGACGAGGACGGCGAGAAGAAGCCTGCC
GGATGGTGAACAAAAATACTTACTATTTAAGTTGTTACGCTGATGATGAC
GGCGTGTTTGCGCAAAACGAGTTCCATTTGCGAGTTTTGATTTGGTCGTA
TATAGCTAACAGTGAGCTGCACCACATGGTTGTTCGTGATGCTGGTGGTG
TCGAAACGCCGCGTTTCTATGTGCCGCTTTGGAGTGTGTGACATGGGCAA
TTGAACTTGCTGTGGAACATGGTGCTTGCCACCCACTGCTCGCTGTTGCA
CGCTGTCGACGGTGTTTTTTGGGGTGTTTGTTGGGGTGTTTTTCATCAAC
ATGTTTTCGATGGTAATGTCCTCTCTTATGACGGTCGGATTGTTGTGTTG
GAAAGTTCTTTTTTGGCCGGTTCAATACAAATGAGCTGGTAAAATCATCG
AAACAAAAATAATCTAACGTCTCAAAAATCAAGACAGTAATTAAGTTTCC
CACGCCCCAAGAAAACACGCTAATTGGTGCGTTTTTTTTTGTTTTTTTTC
GTTCTTTGTTGTTGTTTTTGTTTGTGTACTTGCCAAAGGGCTCGGCTGCG
AGAGGAAGACAGTGATGATGAGGAGGATGATGGAGATGGAGAAAGCGACT
TCGAGGCAGAAAGCGAGAGTGAGAGCGAGGATGATGACGATTCGGAAGAG
GATTCCGATGATGATGACGACGATGATGACGATAGCGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25881:651..1492-

>mRNA_H-paniculata_contig25881.7054.1 ID=mRNA_H-paniculata_contig25881.7054.1|Name=mRNA_H-paniculata_contig25881.7054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig25881:651..1492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTGGCTGGAGGAGTGTGAGATCACGTACACGCAGACAGCCAAGCC
GTGGAACTGGAAGGCCATGATGCAGGACATCCGCTCTGATAACCGATTTT
ACCTCGACACGGACGAGGACGGCGAGAAGAAGCCTGCCGGATGATGTCTT
GGCTGGAGGAGTGTGAGATCACGTACACGCAGACAGCCAAGCCGTGGAAC
TGGAAGGCCATGATGCAGGACATCCGCTCTGATAACCGATTTTACCTCGA
CACGGACGAGGACGGCGAGAAGAAGCCTGCCGGATGGGCTCGGCTGCGAG
AGGAAGACAGTGATGATGAGGAGGATGATGGAGATGGAGAAAGCGACTTC
GAGGCAGAAAGCGAGAGTGAGAGCGAGGATGATGACGATTCGGAAGAGGA
TTCCGATGATGATGACGACGATGATGACGATAGCGAGGAGGGCTCGGCTG
CGAGAGGAAGACAGTGATGATGAGGAGGATGATGGAGATGGAGAAAGCGA
CTTCGAGGCAGAAAGCGAGAGTGAGAGCGAGGATGATGACGATTCGGAAG
AGGATTCCGATGATGATGACGACGATGATGACGATAGCGAGGAG
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