mRNA_H-paniculata_contig25870.7053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25870.7053.1
Unique NamemRNA_H-paniculata_contig25870.7053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25870.7053.1 vs. uniprot
Match: D7FYB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-16
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  214 MQACLDRGDTNGAGQAQRRLDVWAKKRETISGAT---VPMVKAAVAARVPGFNVYTR 375
            MQAC+DRGD  GA QAQRRL VWAKKR+ +SG +   VP+VKAAVAARVP   ++TR
Sbjct:    1 MQACVDRGDAGGAAQAQRRLSVWAKKRKGMSGVSPSAVPLVKAAVAARVPSLKIFTR 57
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BLAST of mRNA_H-paniculata_contig25870.7053.1 vs. uniprot
Match: A0A2N1ZRH3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-10 TaxID=2013792 RepID=A0A2N1ZRH3_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 3.490e-7
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  139 FLAMKAGADACVVGASNPLPELAVRMQACLDRGDTNGAGQAQRRLDVWAKKRETISGATVPMVKAAVAARVPGFNVYTR 375
            F A++ G    V GA+NP+PEL + MQ    R   + A   QR LD+W + R       +P+VKAA+ AR+  F V+ R
Sbjct:   97 FEALQKGLSGSVTGAANPMPELLIAMQVEY-RLSASKAQSMQRCLDIWNRFRNDSGYFEIPLVKAAMGARIDRFPVHVR 174
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BLAST of mRNA_H-paniculata_contig25870.7053.1 vs. uniprot
Match: A0A257NHK0_9GAMM (Dihydrodipicolinate synthase n=1 Tax=Methylococcaceae bacterium NSO1 TaxID=1917483 RepID=A0A257NHK0_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 3.820e-7
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:  148 MKAGADACVVGASNPLPELAVRMQACLDRGDTNGAGQAQRRLDVWAKKRETISGATVPMVKAAVAARVPGFNVYTR 375
            ++ G    V G +NPLPEL + +QA       N A   QR LDVW + RET     +P+VKAA+ AR+  F ++ R
Sbjct:  195 LQKGLSGSVTGGANPLPELLIAIQADFQISG-NKAQSMQRSLDVWNEFRETSGYFEIPLVKAAMGARIADFPLHVR 269
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BLAST of mRNA_H-paniculata_contig25870.7053.1 vs. uniprot
Match: UPI001F49025D (dihydrodipicolinate synthase family protein n=1 Tax=Methylomarinum vadi TaxID=438855 RepID=UPI001F49025D)

HSP 1 Score: 55.5 bits (132), Expect = 1.990e-6
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  139 FLAMKAGADACVVGASNPLPELAVRMQACLDRGDTNGAGQAQRRLDVWAKKRETISGATVPMVKAAVAARVPGFNVYTR 375
            F  ++ G    V GA+NPLPEL + +QA   R     A   QR LD W   R+      +P+VKAA+ AR+ GF  + R
Sbjct:  264 FEVLQKGLTGSVTGAANPLPELLITLQAEF-RSCPAKAQSIQRCLDTWNAFRQASGHPEIPLVKAAMGARIAGFPPHVR 341
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BLAST of mRNA_H-paniculata_contig25870.7053.1 vs. uniprot
Match: UPI00192265A3 (dihydrodipicolinate synthase family protein n=1 Tax=Methylomicrobium sp. RS1 TaxID=2802053 RepID=UPI00192265A3)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-5
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  139 FLAMKAGADACVVGASNPLPELAVRMQ-ACLDRGDTNGAGQAQRRLDVWAKKRETISGATVPMVKAAVAARVPGFNVYTR 375
              A++ G    V G +NPLP+  + +Q A ++R D + A QA   LD W   R T +   +P+VKAA+ AR+ GF  Y R
Sbjct:  190 LAALQNGLHGSVTGGANPLPDYLLAIQKAWINRSDKSLALQAA--LDAWNAFRSTSALTEIPLVKAAMGARIAGFPPYVR 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25870.7053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYB6_ECTSI1.490e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2N1ZRH3_9GAMM3.490e-739.24Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A257NHK0_9GAMM3.820e-740.79Dihydrodipicolinate synthase n=1 Tax=Methylococcac... [more]
UPI001F49025D1.990e-639.24dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI00192265A31.160e-538.75dihydrodipicolinate synthase family protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25870contigH-paniculata_contig25870:710..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25870.7053.1prot_H-paniculata_contig25870.7053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25870 710..2974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.8254411-CDS-H-paniculata_contig25870:709..7901622929769.8254411-CDS-H-paniculata_contig25870:709..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25870 710..790 -
1691481003.4306693-CDS-H-paniculata_contig25870:709..7901691481003.4306693-CDS-H-paniculata_contig25870:709..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25870 710..790 -
1622929769.8439915-CDS-H-paniculata_contig25870:1462..15661622929769.8439915-CDS-H-paniculata_contig25870:1462..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25870 1463..1566 -
1691481003.4412525-CDS-H-paniculata_contig25870:1462..15661691481003.4412525-CDS-H-paniculata_contig25870:1462..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25870 1463..1566 -
1622929769.8618875-CDS-H-paniculata_contig25870:2808..29741622929769.8618875-CDS-H-paniculata_contig25870:2808..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25870 2809..2974 -
1691481003.4512284-CDS-H-paniculata_contig25870:2808..29741691481003.4512284-CDS-H-paniculata_contig25870:2808..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25870 2809..2974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.875379-UTR-H-paniculata_contig25870:2974..30011622929769.875379-UTR-H-paniculata_contig25870:2974..3001Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25870 2975..3001 -
1691481003.4601612-UTR-H-paniculata_contig25870:2974..30011691481003.4601612-UTR-H-paniculata_contig25870:2974..3001Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25870 2975..3001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25870.7053.1

>prot_H-paniculata_contig25870.7053.1 ID=prot_H-paniculata_contig25870.7053.1|Name=mRNA_H-paniculata_contig25870.7053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MALKEALPACQLLVSGERRIPPAEGVGHGDGIKEVDGFLAMKAGADACVV
GASNPLPELAVRMQACLDRGDTNGAGQAQRRLDVWAKKRETISGATVPMV
KAAVAARVPGFNVYTR*
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mRNA from alignment at H-paniculata_contig25870:710..3001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25870.7053.1 ID=mRNA_H-paniculata_contig25870.7053.1|Name=mRNA_H-paniculata_contig25870.7053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig25870:710..3001- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGAGGGAGAAATTTGTCATACTCCATGGCCTTGAAGGAGGCATTACC
GGCCTGTCAGCTGCTGGTCAGTGGAGAGCGCCGGATTCCGCCTGCAGAGG
GAGTCGGTCACGGAGACGGGATAAAGGAGGTGGACGGATTTTTGGCGATG
AAGGCTGGGGCGGATGCTTGTGTCGTGGGTGCCAGTAACCCTTGTGAGTT
TATGTATACCGTAGTATGTGTGTTCACCGTGTATGGCAACAGCTTCCCTT
CCTTTCCGTCCCCGCGGGAGTGAGGTAGATAGAGTAGCGGTGAAATGTTT
TTCGGGTCACATTTCGATGGAAACAAACAAGGCTACTTCTTCCAGAGGAG
GACTACTACATGCGTGGTCAACGATCTAACAACTGTTACGTGTAAAATAT
GAGGAGACGCCTCCTCGACGAAGGAAATACGAATACTTGAAGCATGTGGA
AATAAAAAAAAAAAAAAAAATTGTTTCTCCTAGTTTTAGAATGTGCAGGA
TAGCATTTAGCATTATGTGACGAGTCCCCCCCCCCTTTCTCCTCCGTTTT
TTTGTTTTTGCTATTTGTCAATCGGAGCAGTCGTACCGTACTACGTGCGT
GGTCCATTTTTTTTTTTTTTAACCCCCGGAAGGCAAATACGTGGTCCATC
TGTGGCGTGTACACGTAATGAATGAATGTGCTCACATACTAAAATGACAC
ATTCAGGCGAATGTTTAATAAAAAAAATGCTTGCGAATGGCTCGAGTATC
GTATTCGACGGCGGCGTAAGTGGTTGAGATGATAGTTTCGCAGCTGGGAT
TTGAGATTTTTGTGTCTATGTACACAGTAGAAGCACCTTCTTTCATGGAA
TTTACTATCTCTGTAGTCAGTCAGCCTTGATGCTGGAGAGTAGAAAAATG
TACGAGATATGGTCATACGGTAGAGAATTGAACATTCACGAAGGGATGAA
GGAAGGGTCTTTTTTGTTTTTTTTATGACCTGTCTATCTATCTGTCGGTT
CGAACGGATTTTGGACAGGGGAAACGCCAAGTGTTCTCGTGCTATCATAG
TCAGTCATATCCCAAAATTCGCGACGACGTCCATTGACTATTGATTGACC
TTTAGTCGTCCATTGACTATCATCATCATCATCATCATCATCATCATCAT
CATCATCATCATCATCATCATCACCTTAATCAGTGTAATCGTATCAATTA
ATTAAGAATACGTAAGGATTATGTGTGTTCACCTATTGTTGTTTACAGCT
CTACATTTCTGCGAAATATTTCGTGTCTTGTGGCCCCTTTCCGAGAGTCG
GTAGAACGATTTATATCGGAATCCCATGTGTTGGGGACAATAACCATTTT
TGTTTTTTGCTCGATTTCTCTCTCTCTCATGTGACCTTGTTCTTTTGCGC
GACGTGGGTGTATTTCTCTGTTCATACGTGCACAGTACCAGAGTTGGCAG
TGAGAATGCAGGCGTGCTTGGACAGAGGGGATACCAACGGTGCCGGACAA
GCGCAGCGGAGGCTGGACGTGTGGGCTAAGAAGCGGGAGGTTTGTTTGTA
TGAGACTAACCAGACGCCGGGTATGTTATGTTACACGGATGAGCTCACCA
CAAGGTCGCGCGGCATGCGAGGTTACGTGGGAACGTGCGCAGTCGAAAGA
AGATACCGAGGTAGTTTTTTTGCAGAGTGATGATTGGTGTATGTAGAGTC
AGTCAGTGGCTGACTCTTGATATCTTACACAGAACGCCTTATTACAATAT
TCGGCATACCCGACCCCGCGTTGACCTGATTTTGAATGCCCTGAAGGTCA
ACATCTGAATTCAAATCAACTATTGCTACTCAACCATTGTTGATGCATGC
TACGTTCAAATGAAACAAGGTATAATATATACCCAGACAACGCGCCGCGG
GAGAGCGTGTTCCGCGTGTCGTGATTTTTTTTTTGTTAAGACCATTGGGA
AGACGGAGCCTTTTTTTTTTTTTTTTCCGATCGGAGCGATATTCCGATGG
TCAATCGCTCTGCAGGATCGGGGAGAGGAGGGTGTACTTATGAAACGCAT
GCCGCAGTGTTCAGACAGTTGATCTCGGATCCCTACGATGCCAAGACGAA
GCTTTTGCCGAGTCTTCGTCGGCCAGGTTGCATTTCACAACGGCCGATAC
AAGTCACGTGCTTCTTTATACTGTATCCGTATATATCCGTTTATCTATGA
CTTTTGGGCAGACAATATCCGGTGCCACGGTTCCTATGGTGAAGGCCGCG
GTCGCTGCGAGGGTTCCCGGGTTCAATGTGTACACAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig25870:710..3001-

>mRNA_H-paniculata_contig25870.7053.1 ID=mRNA_H-paniculata_contig25870.7053.1|Name=mRNA_H-paniculata_contig25870.7053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig25870:710..3001- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTTGAAGGAGGCATTACCGGCCTGTCAGCTGCTGGTCAGTGGAGA
GCGCCGGATTCCGCCTGCAGAGGGAGTCGGTCACGGAGACGGGATAAAGG
AGGTGGACGGATTTTTGGCGATGAAGGCTGGGGCGGATGCTTGTGTCGTG
GGTGCCAGTAACCCTTATGGCCTTGAAGGAGGCATTACCGGCCTGTCAGC
TGCTGGTCAGTGGAGAGCGCCGGATTCCGCCTGCAGAGGGAGTCGGTCAC
GGAGACGGGATAAAGGAGGTGGACGGATTTTTGGCGATGAAGGCTGGGGC
GGATGCTTGTGTCGTGGGTGCCAGTAACCCTTTACCAGAGTTGGCAGTGA
GAATGCAGGCGTGCTTGGACAGAGGGGATACCAACGGTGCCGGACAAGCG
CAGCGGAGGCTGGACGTGTGGGCTAAGAAGCGGGAGTACCAGAGTTGGCA
GTGAGAATGCAGGCGTGCTTGGACAGAGGGGATACCAACGGTGCCGGACA
AGCGCAGCGGAGGCTGGACGTGTGGGCTAAGAAGCGGGAGACAATATCCG
GTGCCACGGTTCCTATGGTGAAGGCCGCGGTCGCTGCGAGGGTTCCCGGG
TTCAATGTGTACACAAGGTGAACAATATCCGGTGCCACGGTTCCTATGGT
GAAGGCCGCGGTCGCTGCGAGGGTTCCCGGGTTCAATGTGTACACAAGGT
GA
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