mRNA_H-paniculata_contig2582.7043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2582.7043.1
Unique NamemRNA_H-paniculata_contig2582.7043.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 3.440e-121
Identity = 193/287 (67.25%), Postives = 218/287 (75.96%), Query Frame = 2 
Query:   44 KVLKTWLAALSSIVIAGPALAFSTSPALVGASCAGSPNTAKTSTSTSRAKSTPWMGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGRVCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSE---VRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNRPAAIFRFLERKVFLDVLQATFSVQPETHRFCPEGAAGLTRPSNYVAVEPLPSTI 895
            +V+K  +AA  S+  AGP LAFS S    G     S +   +ST     K TPWMGQSFNAQAV+SM R+ RHPALAVPH+S+ HIG LDFE L+ MGCKGV+FDKDNTLTAPY D  H LVEEGL+RCME F+G VCIMSNSAGTRDD D ADAIRIE ALGIPV+RHD KKPGGI DVLAFF   D E   VRLDELCFVGDRLLTDVVFGNL+GMLTVHTQPLTL+GDNRPAA+FR+LERKVF+     T SV+P+ HR CPEGA  L R  +  A EP P+ +
Sbjct:   24 RVVKACIAAGCSV--AGPVLAFSASG--FGVKALDSSDCVSSSTQRPNPKLTPWMGQSFNAQAVSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREGD-TAAEPEPTPV 305
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.110e-111
Identity = 169/231 (73.16%), Postives = 187/231 (80.95%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGRVCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSE---VRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNRPAAIFRFLERKVFLDVLQATFSVQPETHRFCPEGAAGLTRPSNYVAVEPLPS 889
            MGQSFNAQAV+SM R+ RHPALAVPH+S+ +IG LDFE L+ MGCKGV+FDKDNTLTAPY D  H LVEEGL+RCME F+G VCIMSNSAGTRDD D   AIRIE ALGIPV+RHD KKPGGI DVLAFF   D E   VRLDELCFVGDRLLTDVVFGNL+GMLTVHTQPLTL+GDNRPAA+FR+LERKVF+     T SV+P+ HR CPEGA  L R     A EP P+
Sbjct:    1 MGQSFNAQAVSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREGG-TAAEPEPT 230
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.060e-81
Identity = 120/209 (57.42%), Postives = 159/209 (76.08%), Query Frame = 2 
Query:  200 PWMGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGRVCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAEN--DSEVRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNRPAAIFRFLERKVFLDVLQATFSVQPETHR 820
            PWMGQSFN++AV ++G + RHP+LAVPH+++ +I  LDF  L+ MG +G++FDKDNTLTAPY ++ H  + +G RRC   F G VCIMSNSAGT DD++   AI+IE  LGIPV+RH  KKPGG+ +VLAFF E   D  +   +LC +GDRLLTDVVFGNL+GMLTVHT+PLTLQGDN+ A + R++E ++F +++ A FSV+   HR
Sbjct:    3 PWMGQSFNSKAVRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCADEGIEARDLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRIFFNIVHARFSVEAPQHR 211
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL)

HSP 1 Score: 246 bits (627), Expect = 2.390e-76
Identity = 125/206 (60.68%), Postives = 151/206 (73.30%), Query Frame = 2 
Query:  209 GQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGRVCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSE-VRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNRPAAIFRFLERKVFLDVLQATFSVQPETHRF 823
            GQS+NA A+ ++GR+A  P+LA+PHV+V HIG LDF  LR+ GCKG+VFDKDNTLTAPY ++ H LV EGL RC+  F+GRVCI+SNSAGT DD     A +IE  LG+PV+RH  KKP G++DVL FF     E VR  EL  VGDRLLTDVVFGNLYGMLTVHT+PLTL+GDN+ A + R LE  VFL +      V+P  H F
Sbjct:   36 GQSWNANAMGALGRVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQSGEAVRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAVFLRLRGV---VKPPVHPF 238
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A6V3JXN8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3JXN8_9EUKA)

HSP 1 Score: 195 bits (495), Expect = 2.450e-56
Identity = 101/206 (49.03%), Postives = 137/206 (66.50%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGR-VCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSEVRLDELCFVGDRLLTDVVFGNLYGMLTVH-TQPLTLQGDNRPAAIFRFLERKVFLDVLQATFSVQPETH 817
            +GQS N  A+ S+ R+ R P+L VPHVSVPH+GH+DF  L+  G + VVFDKDNTLTAPY+ + H L +    +C+E F    V IMSNSAGT DD +  +A  +E ALG+PV+RH AKKPGG +++ A +   +  +  D++C +GDRL TDV+FG L+G+LTVH TQ L  +GDN  A   + LE  + L +LQ    V+P  H
Sbjct:   54 LGQSLNMDAIGSLARVLRKPSLLVPHVSVPHVGHMDFAALKASGIRAVVFDKDNTLTAPYSLEPHPLTKPAFAKCVEEFGAENVIIMSNSAGTNDDAEYREAKIVEDALGVPVLRHSAKKPGGFDELTAHY---NGALTPDQICIIGDRLFTDVLFGTLHGLLTVHVTQSLKHEGDNVLARAIKALENGILLRLLQGV-GVKPIYH 255
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.480e-56
Identity = 104/187 (55.61%), Postives = 130/187 (69.52%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGR-VCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFA-ENDSEVRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNRPAAIFRFLE 760
            M QS N Q V ++G++ R+P+L +PHVSV HIG LDFE+LR+ G KGV+FDKDNT+TAPY D+ H  V          F  R + I+SNSAGT DD   A AIRIE +LG+PV+RH  KKPG I +VL  F  E   +   ++LC +GDRLLTDV++GN  GMLTVHTQ LT +GDN+ AAI R LE
Sbjct:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A7S2TGD2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TGD2_9EUKA)

HSP 1 Score: 191 bits (486), Expect = 1.140e-54
Identity = 101/214 (47.20%), Postives = 140/214 (65.42%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGR-VCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSEVRLDELCFVGDRLLTDVVFGNLYGMLTVH-TQPLTLQGDNRPAAIFRFLERKVFLDVLQATFSVQPETHRFCPEGAA 841
            +GQS N  A+ ++ ++ R P+L +PH+SVPH+GHLDF+ LR  G + VVFDKDNTLTAPY+ + H L + G  +C+E F    V IMSNSAGT DD +  +A  +E+ALG+PV+RH AKKPGG  ++ A +      +  D++C VGDRL TDV+FG L+G+L+V  TQ L  QGDN  A + + LE  + L +L     ++P  H    E AA
Sbjct:   79 LGQSLNLDAIGALAQVIRRPSLLLPHISVPHVGHLDFDALRASGIRAVVFDKDNTLTAPYSLEPHPLTKPGFEKCVEVFGAENVMIMSNSAGTDDDEEHREARVVEEALGVPVLRHRAKKPGGYAELAAHYG---GALTPDQMCIVGDRLFTDVLFGTLHGLLSVQVTQSLKHQGDNALARVIKALENGILLRLLNG-LGLKPIYHPAVQEKAA 288
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO)

HSP 1 Score: 182 bits (461), Expect = 1.070e-51
Identity = 101/195 (51.79%), Postives = 133/195 (68.21%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKM-GCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAF-KGRVCIMSNSAGT-RDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSEVRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNR----PAAIFRFLERKV 769
            M QS N++A+ ++  +AR PAL VPH+SVP +  ++++ L++  G + V+FDKDNTLTAPY    H    +GL+R ++ F K RV I+SNSAGT +DD D  DA++IE+ALGI V+RH  KKPGG+E+VL  FA  D      +LC VGDRLLTD+VFGN++GMLTVHT PL    DN      A I R  E KV
Sbjct:    1 MVQSVNSKAILTLASVARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA----KLCMVGDRLLTDIVFGNIHGMLTVHTLPLCKGRDNARDNWTAKILRPAENKV 191
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BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.360e-51
Identity = 98/193 (50.78%), Postives = 128/193 (66.32%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKM-GCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGR-VCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSEVRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNR----PAAIFRFLERK 766
            M QS NA+A+A++  + RHP L VPHVSV ++  L++  +++  G + ++FDKDNTLTAPY    H    +GL+R  E F    V IMSNSAGT+DD    DA  IE+ALGI V+RHD KKPGG+++VL  F  +D       LC VGDRLLTDVVFGNL+ MLT+HT PL    +NR    P+ I R++E K
Sbjct:    1 MVQSLNAKALATLAYVLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPAT----LCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENK 189
[Close]
BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Match: A0A8J9RZH6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZH6_PHATR)

HSP 1 Score: 176 bits (445), Expect = 7.240e-50
Identity = 94/192 (48.96%), Postives = 123/192 (64.06%), Query Frame = 2 
Query:  206 MGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEMLRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAF-KGRVCIMSNSAGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSEVRLDELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQG----DNRPAAIFRFLERK 766
            M QS N +A+ +M  + R P L VP +SV  +  ++F  L+  G   V+FDKDNTLT+PY ++ H L  +G+   +  F + RV I+SNSAGT+DD+D  DAIRIE  LGI V+RH+ KKPGG+++VLA F   D       LC VGDRLLTD+VFGNL+GMLTVH  PL        DN  A + R +E K
Sbjct:    1 MVQSINTKALLTMASVLRRPGLMVPQLSVATVSQMNFTALKDHGIAAVMFDKDNTLTSPYENEIHPLAAQGIDEALRVFGRDRVAILSNSAGTKDDVDYTDAIRIENVLGIQVIRHEEKKPGGLDEVLAHFDLTDPAT----LCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGSENSKDNWTAKLLRPMENK 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2582.7043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC82_ECTSI3.440e-12167.25Haloacid dehalogenase (HAD) superfamily protein n=... [more]
A0A6H5K9X3_9PHAE1.110e-11173.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z207_9STRA1.060e-8157.42Mitochondrial PGP phosphatase-domain-containing pr... [more]
A0A7S1ISK9_9EUGL2.390e-7660.68Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6V3JXN8_9EUKA2.450e-5649.03Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
W7U306_9STRA4.480e-5655.61Haloacid dehalogenase superfamily protein n=1 Tax=... [more]
A0A7S2TGD2_9EUKA1.140e-5447.20Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A1Z5JVZ9_FISSO1.070e-5151.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A448ZEQ0_9STRA3.360e-5150.78Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A8J9RZH6_PHATR7.240e-5048.96Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2582contigH-paniculata_contig2582:12207..17272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.2
Seed ortholog evalue1.1e-97
Seed eggNOG ortholog2880.D8LC82
Preferred nameGEP4
KEGG rclassRC00017
KEGG koko:K01094
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0031974,GO:0032048,GO:0032049,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046838,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.phosphatase
EggNOG OGsCOG1011@1,KOG2961@2759
Ec32 ortholog descriptionhaloacid dehalogenase (HAD) superfamily protein
Ec32 orthologEc-20_004780.1
EC3.1.3.27
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size1206
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2582.7043.1prot_H-paniculata_contig2582.7043.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2582 12229..16967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.0145814-UTR-H-paniculata_contig2582:12206..122281622929768.0145814-UTR-H-paniculata_contig2582:12206..12228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 12207..12228 +
1691481002.5678585-UTR-H-paniculata_contig2582:12206..122281691481002.5678585-UTR-H-paniculata_contig2582:12206..12228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 12207..12228 +
1622929768.1327815-UTR-H-paniculata_contig2582:16967..172721622929768.1327815-UTR-H-paniculata_contig2582:16967..17272Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 16968..17272 +
1691481002.643317-UTR-H-paniculata_contig2582:16967..172721691481002.643317-UTR-H-paniculata_contig2582:16967..17272Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2582 16968..17272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.0327823-CDS-H-paniculata_contig2582:12228..123921622929768.0327823-CDS-H-paniculata_contig2582:12228..12392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 12229..12392 +
1691481002.5873528-CDS-H-paniculata_contig2582:12228..123921691481002.5873528-CDS-H-paniculata_contig2582:12228..12392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 12229..12392 +
1622929768.0499043-CDS-H-paniculata_contig2582:14375..144381622929768.0499043-CDS-H-paniculata_contig2582:14375..14438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 14376..14438 +
1691481002.6009552-CDS-H-paniculata_contig2582:14375..144381691481002.6009552-CDS-H-paniculata_contig2582:14375..14438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 14376..14438 +
1622929768.0681338-CDS-H-paniculata_contig2582:15041..151531622929768.0681338-CDS-H-paniculata_contig2582:15041..15153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 15042..15153 +
1691481002.6097264-CDS-H-paniculata_contig2582:15041..151531691481002.6097264-CDS-H-paniculata_contig2582:15041..15153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 15042..15153 +
1622929768.0823886-CDS-H-paniculata_contig2582:15434..155561622929768.0823886-CDS-H-paniculata_contig2582:15434..15556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 15435..15556 +
1691481002.61745-CDS-H-paniculata_contig2582:15434..155561691481002.61745-CDS-H-paniculata_contig2582:15434..15556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 15435..15556 +
1622929768.097767-CDS-H-paniculata_contig2582:15995..162781622929768.097767-CDS-H-paniculata_contig2582:15995..16278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 15996..16278 +
1691481002.6252346-CDS-H-paniculata_contig2582:15995..162781691481002.6252346-CDS-H-paniculata_contig2582:15995..16278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 15996..16278 +
1622929768.1093886-CDS-H-paniculata_contig2582:16832..169671622929768.1093886-CDS-H-paniculata_contig2582:16832..16967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 16833..16967 +
1691481002.6336453-CDS-H-paniculata_contig2582:16832..169671691481002.6336453-CDS-H-paniculata_contig2582:16832..16967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2582 16833..16967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2582.7043.1

>prot_H-paniculata_contig2582.7043.1 ID=prot_H-paniculata_contig2582.7043.1|Name=mRNA_H-paniculata_contig2582.7043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
MYNRILLKVLKTWLAALSSIVIAGPALAFSTSPALVGASCAGSPNTAKTS
TSTSRAKSTPWMGQSFNAQAVASMGRIARHPALAVPHVSVPHIGHLDFEM
LRKMGCKGVVFDKDNTLTAPYADDAHHLVEEGLRRCMEAFKGRVCIMSNS
AGTRDDLDCADAIRIEKALGIPVVRHDAKKPGGIEDVLAFFAENDSEVRL
DELCFVGDRLLTDVVFGNLYGMLTVHTQPLTLQGDNRPAAIFRFLERKVF
LDVLQATFSVQPETHRFCPEGAAGLTRPSNYVAVEPLPSTIS*
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mRNA from alignment at H-paniculata_contig2582:12207..17272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2582.7043.1 ID=mRNA_H-paniculata_contig2582.7043.1|Name=mRNA_H-paniculata_contig2582.7043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5066bp|location=Sequence derived from alignment at H-paniculata_contig2582:12207..17272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGTAGATGTGTGGAGTGACATGTATAATCGAATACTGTTGAAGGTTC
TGAAGACTTGGCTCGCAGCTTTAAGTTCGATAGTAATAGCTGGACCGGCG
CTGGCGTTTTCTACGTCACCTGCCCTTGTCGGTGCTAGTTGTGCTGGTAG
CCCTAATACCGCTAAAACATCAACATCAACAAGCAGGTGAGCCACAAACA
GTAGTAACTAGGCGAGAATCGAGAGTACATGGTGCTCGTATTTTCGGCTA
CCGATGAAGTGGCCCACATTGGTGTGTAGATACATTAGTTCCGTTGAGTA
TTGCTTGAGCTGATCCTCTCCTCATCGATACTCTTTGCGCTCCAAGAAGA
AGGCGACAGTGAGTAATTCCATTTCGAGCTGCACATGCCTATTTTTGTTC
TTATTCTGAAATCTACAGAAAAGGGCAAAGGGGAGACGCGTTGAGAGCAG
CACAAGTACGTAGCGAAGTAACTACTCTGGCAAACTCTTGAATCCTTGAC
ATACGTCAATATTTTTTCCGTTGTTTGTGGGTTCTCCAGTGACTACGTAC
TCCGGCAGTAGTTGCGGTAATTATGAGCTTTCTGTCTGAAGCGGTTGTAC
AGTCTGTACCCGTGGATCGTCACCCATGACCATTTCTGTTTTGCTCTCAT
ATTCTCGGCTATGCACTAGTGAACTAACTGCATATCTATTCAACCATGCT
CCTTCTTGCTTCTGGTATGAGTCGGCAAGGTCGGGGCTATGTATTGGCAT
CAACAAGTCTTGAATTCGCCAAGAATTTCGATTTTGTCAGTATTAATAGA
CTTCGCCACAGAAAATACGTACGCAATGAACGATTCGTAAAAAACCTAGA
ACCATACCAAGTATGAACAAGGCTGAACCTGCCTTGAATCCCTCTGATAG
CGCCCCAGGGGCGAGACATTTTTTTCTTGCCGACATTCTATTGCACGGAG
CGATATGACCAGCCGCGGGGCGTTGTTTGAAAACGTGACGTCATTTGGGC
GTCCCGGGGCGATATTAAAGGTAGTGTCCTGTCATACCAGAGCGTAGGTT
GGACGGAGGGGCAGGGTGGGACGACAACTACTGCAAATTTGTCGTGGTCA
GCGAGGATGTGGAAAAGATTCGCGTGGTAATAAAAAAACTATACAAGAAT
ATAATACATGTAAGGGTTTCAAAAGTCCGTTCTTCTATTCAATTACCAAG
TTAAAAGGTTATCACATTTCATTTCCGGTTCGTTTTGGTTCGTTTATCAA
ACCTAAAAAGTTATCGTCGTAGAACATGACATGAGCGCATAGTATCCTAC
GGCGATGGGGTGCGGATAGAATAGAGCTGCAGTGAATCGTCGTCTGTACC
GGTACATACAGGTCTGCCTTCTCTGTCTGTAGGCACAGTGTACACCTGAG
GCACAGACTGTTCAAGCACTACAACACGTGGGTATGGACTCTCAGGGCAT
GCAATGTCGGCGGATGAACTTGCCACTCGTTCTGGCAATACAAATTCATT
TGTGAGTCGGCGGTAGCGCCGACGCCAATGAGCTGCACTTCTCGAGACAA
CAACAGCATCAAGACGCCGACAACGTTGATCACGCTGGTCCGGGAAAGCG
AGAGCACAGCACTGTATCATGATTTTGTCTTGATGGACGAGGTTGAAGAT
CAGAGTCCTTGAAAGCCGCGGAGGACGTGGTCGATTCAATAAAGATACCT
TACTACTTTATCAGTACAGTACTAATTACAGTGGTTGCTTGCCAGACACC
CTCTGATTCCCGCGGAATTGATGTTGACTGTGCGGATTTATGGTCTGCAC
GTAGTGTCGTACACCATCTATTGCATATAGAATGTCGATGCCGCGGTATT
GCTGCTCCCTGCATACGGTGTCTTTCAAAGCAATTATATTGCAGTCAATA
CACCTCGCTACCTCCGTCATCATAATCCCACAAGTTTCGACAATATGAGT
ACATGAATTCCTTCTCACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCGCGCGCGCGCGCGCTACAACGGGCGGGGTTTTGTCAGAGGTATTTA
CTGTAAGGACGCCGTGGGATATTCGTAGACCGCTAGAACTCCACCAAATA
CGAACAACCTAATATAAAGTTCTAGCGAACATCACGCTGTGGCATCCCCC
GTGCCCCGTGACGTGTCAGGGCCAAGAGTACGCCTTGGATGGGTCAGAGT
TTCAACGCACAGGCCGTGGCCTCCATGGGAAGGTGAGAGCCCAATCACGA
CTGCGTTTACGTTATATAAATACAACACTACTAGTCAAGTTTTTCTGTTT
CTGTGTTTTTCGCGGTTTCTCGCGTGTAGATTGTTTCTGTATGCTGCTAT
AGGTACTGTACACCGTAGCCGTCTAGTCCCTCTCAGGTGCTTGGCCTTCA
AATCGACTGGAAAATGCTACATATCTGGTTGTGGGACTCGGTGCTGGACT
GTTTCCAGACGGGGAAATTGGGTGGGCCTTATAGATCGTTGACCTCCTGT
AGAAATTATTCAACATGCTGGGGGCTCAACAAGGGCTGACGTCCGTCAAC
ACGAGCGCCCTTATTTCAGGTATTACGCTTAGCCCGCACATCAGTCGGGA
GATCCGCGGTTACAGAAGAACACAAAAGGAGTGGGTCACGCCCGTGGGAT
ACCGTTAAACATGCATATTTTCTTTGTACACAGACTTTGAAGTGATACTG
ATTACCACACACGTCACAGCGACAAGGCCTACTATAGACATGGCGACTAG
GCAACAATGTGTCTTTCAGGTGCAGCCACTTGATGTGAATGTCTTGCTCA
CACTGAAAGCACATGTGTCCATCGCCTGCAAGCAGGATAGCGCGACATCC
CGCCCTGGCTGTGCCGCATGTGTCGGTACCGCACATTGGCCACTTGGACT
TTGAGATGTTGCGCAAGATGGGCTGCAAGGGAGTGGTCTTTGACAAGGTG
AGTTGTCGCCCATGAACGATGCTTGTGTCGACCCGGTGGAGTAGAGCGTT
TGGCTGAATTGTGCTGTGTTACTCGAGCATTATGCCACCTACACCCACTA
CTACAGGTGCGGTACCGAGCACGTGGAAGAAATCCTTGTACCACCGTAGT
GCATGCTGCACCGCAACGCTCTTGTGTATTTGCGCTGTTGTCAATACTTT
CGGACGCACGATGCACGTCTGCCGTGCGTTCAGTCGCCATCGTGTTGACC
TGTGCGTTGACTTTGTGCGACGACGCAGGACAATACGCTGACGGCTCCCT
ATGCGGACGATGCACATCATCTGGTGGAAGAAGGTCTCCGGAGATGTATG
GAGGCTTTCAAGGGTAGGGTTTGCATCATGTCGAACTCGGCTGGCACCAG
GCAAGTATGCACCGATGAAACAATGGAGTCTCAGGTGGCATTTCGCTCAT
GATCAATCAGCATGCCTACAATGCTAACGATAAAAAAAACAGCGATCAAG
GCACAGCTGTTGTTAAGTTTGATGGTGATAAGCTCCATCCACGGTCGATG
CCAGGATTGAAATGAGCATGACACGCAACGAGTCGCTATTTGTTCGGCAT
CGTATCTTACTTGTGTCCTCCGATCGTTCGTTATCTAGTGTCGTGTTTTT
TCTCAGGTTTCGCAGATGAAATGGCTTATGGATGCTGCCATAGTACGAAA
CCATGTTCGTGCAGTGCAATCCTCCTCCCTCTAGCACAATATGCCGCGCT
GAAGTCTCCTCAGTAAGGTGGATTCTACCGCTTGCCATACTGAGATCGTA
TCTTTAATTTATTTTTATCCCCTGTCTGTTGTACTGCAGGGATGACCTTG
ACTGTGCTGACGCTATCCGCATCGAAAAGGCGCTGGGCATTCCTGTGGTG
AGACACGACGCCAAGAAGCCCGGAGGGATCGAGGATGTCTTGGCCTTTTT
CGCTGAAAATGATTCAGAAGTGCGATTAGACGAGCTATGCTTCGTGGGCG
ACCGGTTGCTGACAGATGTGGTTTTTGGCAACCTGTACGGCATGCTCACC
GTACATACCCAACCCTTGACGCTCCAGGGGGACAATCGGCCAGCTGCTAT
CTTCCGGTTCTTGGAACGAAAGGTAACATGAGTAAAGCGCGACAGCGTGT
GGGAATTTCCGAATCTCTTGGCTCTTTAGACGCTGCATTCCTCTTGAGTA
AGTACCCGCAGAGGGAAGACTCTCAGAACGCCCCCCGTGGGCGATTTTTT
ACAGGCCCGATTTTCTCGAAAACCAGAGCGCTAGTGACACCAAACTTTGT
GTCGTTGACAAGATATATCTCGTCGAGATGTGCCATTCGATAGACGTGCT
CTTTTTAACGCGTTGGACTTCGTTATCGAGGAAATTTGTCCAGAAAAATA
ATCGCCCTCGGGGCGAGCTGAGAGCCCTCTACGGTAAATGGTCTCTTGAC
GTGTCGAGTTTACGTGCTATTGTTTGTCTATAGCTAGAGTGGCTTCTCGA
AGCCCGCTGATCTGCGACAAAACGGTCACGCAATCGCAGGTATTTTTCAC
TATTAGTAGCGCTCCCGCCGTATGGTCGTATTGTTTGCGTTTCTCAATCT
TCTTGAGGGTACTCCTTCCAACCCAACCACGGGCTTGCAATCCTCACTCT
GCGTCGCTACGCTTTGTCTGCTGCAGGTGTTCTTGGATGTTCTTCAAGCC
ACATTTTCTGTTCAGCCCGAAACACATAGGTTTTGTCCCGAGGGAGCTGC
AGGTTTAACCCGACCGAGCAATTATGTTGCGGTGGAGCCATTACCTAGCA
CGATAAGTTGAGAATAACTGTTGCTTGTACGTAACAGTTCGGCGTGTGAC
ATGATTTGGTAGAAGCTGGTGGATGGCTGCACGATTATGTCTGCACATGG
TGTGCAGTGCGGTTGTATTTTTTTTTACCTGTTGTGTTAGAATTTAGAAA
GCATGCTAGAATTCGGGCTGGGTGTTGGAGGTTTGTGCATTGTAAAATGT
TCGGAACGAAGTCTAAAGCAAATACAACGGTATGTAAAAAAGTCCACGGC
AATAAAATCCGTGTATAAGACGAGTCAGAAACAATGATAATACATATTGT
AGTTAGTGCCACTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2582:12207..17272+

>mRNA_H-paniculata_contig2582.7043.1 ID=mRNA_H-paniculata_contig2582.7043.1|Name=mRNA_H-paniculata_contig2582.7043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig2582:12207..17272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATAATCGAATACTGTTGAAGGTTCTGAAGACTTGGCTCGCAGCTTT
AAGTTCGATAGTAATAGCTGGACCGGCGCTGGCGTTTTCTACGTCACCTG
CCCTTGTCGGTGCTAGTTGTGCTGGTAGCCCTAATACCGCTAAAACATCA
ACATCAACAAGCAGATGTATAATCGAATACTGTTGAAGGTTCTGAAGACT
TGGCTCGCAGCTTTAAGTTCGATAGTAATAGCTGGACCGGCGCTGGCGTT
TTCTACGTCACCTGCCCTTGTCGGTGCTAGTTGTGCTGGTAGCCCTAATA
CCGCTAAAACATCAACATCAACAAGCAGGGCCAAGAGTACGCCTTGGATG
GGTCAGAGTTTCAACGCACAGGCCGTGGCCTCCATGGGAAGGGCCAAGAG
TACGCCTTGGATGGGTCAGAGTTTCAACGCACAGGCCGTGGCCTCCATGG
GAAGGATAGCGCGACATCCCGCCCTGGCTGTGCCGCATGTGTCGGTACCG
CACATTGGCCACTTGGACTTTGAGATGTTGCGCAAGATGGGCTGCAAGGG
AGTGGTCTTTGACAAGGATAGCGCGACATCCCGCCCTGGCTGTGCCGCAT
GTGTCGGTACCGCACATTGGCCACTTGGACTTTGAGATGTTGCGCAAGAT
GGGCTGCAAGGGAGTGGTCTTTGACAAGGACAATACGCTGACGGCTCCCT
ATGCGGACGATGCACATCATCTGGTGGAAGAAGGTCTCCGGAGATGTATG
GAGGCTTTCAAGGGTAGGGTTTGCATCATGTCGAACTCGGCTGGCACCAG
GACAATACGCTGACGGCTCCCTATGCGGACGATGCACATCATCTGGTGGA
AGAAGGTCTCCGGAGATGTATGGAGGCTTTCAAGGGTAGGGTTTGCATCA
TGTCGAACTCGGCTGGCACCAGGGATGACCTTGACTGTGCTGACGCTATC
CGCATCGAAAAGGCGCTGGGCATTCCTGTGGTGAGACACGACGCCAAGAA
GCCCGGAGGGATCGAGGATGTCTTGGCCTTTTTCGCTGAAAATGATTCAG
AAGTGCGATTAGACGAGCTATGCTTCGTGGGCGACCGGTTGCTGACAGAT
GTGGTTTTTGGCAACCTGTACGGCATGCTCACCGTACATACCCAACCCTT
GACGCTCCAGGGGGACAATCGGCCAGCTGCTATCTTCCGGTTCTTGGAAC
GAAAGGGATGACCTTGACTGTGCTGACGCTATCCGCATCGAAAAGGCGCT
GGGCATTCCTGTGGTGAGACACGACGCCAAGAAGCCCGGAGGGATCGAGG
ATGTCTTGGCCTTTTTCGCTGAAAATGATTCAGAAGTGCGATTAGACGAG
CTATGCTTCGTGGGCGACCGGTTGCTGACAGATGTGGTTTTTGGCAACCT
GTACGGCATGCTCACCGTACATACCCAACCCTTGACGCTCCAGGGGGACA
ATCGGCCAGCTGCTATCTTCCGGTTCTTGGAACGAAAGGTGTTCTTGGAT
GTTCTTCAAGCCACATTTTCTGTTCAGCCCGAAACACATAGGTTTTGTCC
CGAGGGAGCTGCAGGTTTAACCCGACCGAGCAATTATGTTGCGGTGGAGC
CATTACCTAGCACGATAAGTTGAGTGTTCTTGGATGTTCTTCAAGCCACA
TTTTCTGTTCAGCCCGAAACACATAGGTTTTGTCCCGAGGGAGCTGCAGG
TTTAACCCGACCGAGCAATTATGTTGCGGTGGAGCCATTACCTAGCACGA
TAAGTTGA
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