mRNA_H-paniculata_contig25760.7017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25760.7017.1
Unique NamemRNA_H-paniculata_contig25760.7017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25760.7017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25760contigH-paniculata_contig25760:1276..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.5029747-CDS-H-paniculata_contig25760:1275..14041622929764.5029747-CDS-H-paniculata_contig25760:1275..1404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25760 1276..1404 +
1691481000.8779879-CDS-H-paniculata_contig25760:1275..14041691481000.8779879-CDS-H-paniculata_contig25760:1275..1404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25760 1276..1404 +
1622929764.520865-CDS-H-paniculata_contig25760:1887..19591622929764.520865-CDS-H-paniculata_contig25760:1887..1959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25760 1888..1959 +
1691481000.8952727-CDS-H-paniculata_contig25760:1887..19591691481000.8952727-CDS-H-paniculata_contig25760:1887..1959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25760 1888..1959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25760.7017.1prot_H-paniculata_contig25760.7017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25760 1276..1959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25760.7017.1

>prot_H-paniculata_contig25760.7017.1 ID=prot_H-paniculata_contig25760.7017.1|Name=mRNA_H-paniculata_contig25760.7017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
RKPRGSTSPPHCAIVSFMRNWVKVYGESMPNRNATRLYLSSKEELYERLK
KSRAASIVLLPRIVWPL
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mRNA from alignment at H-paniculata_contig25760:1276..1961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25760.7017.1 ID=mRNA_H-paniculata_contig25760.7017.1|Name=mRNA_H-paniculata_contig25760.7017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig25760:1276..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCCCCGCGGGTCCACGTCCCCACCACACTGTGCGATTGTATCGTT
CATGCGCAATTGGGTCAAGGTCTACGGAGAGAGTATGCCAAATCGCAACG
CAACAAGGCTCTACTTGTCCAGCAAGGAGGTAAGAAACGGCAAACGAGCA
GGGGAATCATGTGTTAGTGAGCAGAGAAGTAAACAGAGATACTCTGAATC
TTTTTCAAGTTTTTTTTATTGGTTGCGATGACGCTGCTATTGCCATGGTT
ACTTCGTTAGTTTGTAGTTCTGTTGTGCTTGATATGTGTAACCGTGATTG
ACCGCAATATGTTTGTGGTGTTGGTTGTAGCGGTTATGTTGTTTCCTTGT
TGTTGCACACAGGAATCATAGGTAGGTAGCAGTGTTGGTAGCCTTTTTTA
TAGTAGTTTCAGCAACAGTAGTAGTTGTTACAGTAGTCACGTGTTGTGGT
AGCATTGGCTTTTTTAGTGCAGAAATGCAACCGGCGAACGAATAGATCAC
TCTACAGTATGTCGTTGTTTTCATGATGTTTAACTTCTTTGGTATGCCCG
ACACGGCCCTCCTTCTCCCTCTACGCCCTGTCTTCCCCTCATCTGGCATG
GATACTTGGCAGGAACTATACGAGCGTTTAAAGAAGAGCAGAGCCGCGTC
TATCGTACTGCTGCCGCGGATTGTCTGGCCTCTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig25760:1276..1961+

>mRNA_H-paniculata_contig25760.7017.1 ID=mRNA_H-paniculata_contig25760.7017.1|Name=mRNA_H-paniculata_contig25760.7017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig25760:1276..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCCCCGCGGGTCCACGTCCCCACCACACTGTGCGATTGTATCGTT
CATGCGCAATTGGGTCAAGGTCTACGGAGAGAGTATGCCAAATCGCAACG
CAACAAGGCTCTACTTGTCCAGCAAGGAGAGGAAGCCCCGCGGGTCCACG
TCCCCACCACACTGTGCGATTGTATCGTTCATGCGCAATTGGGTCAAGGT
CTACGGAGAGAGTATGCCAAATCGCAACGCAACAAGGCTCTACTTGTCCA
GCAAGGAGGAACTATACGAGCGTTTAAAGAAGAGCAGAGCCGCGTCTATC
GTACTGCTGCCGCGGATTGTCTGGCCTCTCGAACTATACGAGCGTTTAAA
GAAGAGCAGAGCCGCGTCTATCGTACTGCTGCCGCGGATTGTCTGGCCTC
TC
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