mRNA_H-paniculata_contig25751.7016.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25751.7016.1
Unique NamemRNA_H-paniculata_contig25751.7016.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25751.7016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25751contigH-paniculata_contig25751:1953..3411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.4233084-CDS-H-paniculata_contig25751:1952..20931622929764.4233084-CDS-H-paniculata_contig25751:1952..2093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25751 1953..2093 -
1691481000.8524084-CDS-H-paniculata_contig25751:1952..20931691481000.8524084-CDS-H-paniculata_contig25751:1952..2093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25751 1953..2093 -
1622929764.4402263-CDS-H-paniculata_contig25751:3339..34111622929764.4402263-CDS-H-paniculata_contig25751:3339..3411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25751 3340..3411 -
1691481000.864032-CDS-H-paniculata_contig25751:3339..34111691481000.864032-CDS-H-paniculata_contig25751:3339..3411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25751 3340..3411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25751.7016.1prot_H-paniculata_contig25751.7016.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25751 1953..3411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25751.7016.1

>prot_H-paniculata_contig25751.7016.1 ID=prot_H-paniculata_contig25751.7016.1|Name=mRNA_H-paniculata_contig25751.7016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
GAGEDDGASKRRSKKAKKKERDKKRREEEKRLQDEEEAKRELLRQEKIRL
AEERVEEERRARLLHEREEQE
back to top

mRNA from alignment at H-paniculata_contig25751:1953..3411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25751.7016.1 ID=mRNA_H-paniculata_contig25751.7016.1|Name=mRNA_H-paniculata_contig25751.7016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1459bp|location=Sequence derived from alignment at H-paniculata_contig25751:1953..3411- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTGGTGAAGACGACGGCGCCTCCAAGCGACGAAGCAAGAAGGCCAA
GAAAAAGGAACGAGATAAGAAGGTGAGTGTTCATTTTTTACGCCTCCCAT
GTGTCATCATCCATTCAATGATTTTTCGTGTTATCGTCCTTGTTATGGTA
TCATGAACGACTATCCGTTTCTCACCATGTCATCTGAATATACTTGTTTT
ACCATCCGTGTACACCACACCGTTTATGTCATCATCTAATACATGCATTT
CACCCTCCGTTAGACACACGATAATGCCAATATCTAATACGTGTCATGAT
CCATCGTATTTACCGATGTCAAGTAAATAGCAAAGCCACGGCTAACCCCC
GTCAAGCTCGTGTTTGTGCCTGTATCTCGACCCGCTACGCCTGCATTCAA
GTACAATGCCCATGACGAAGTCACTGTTTAAAGTCACTAAAGGACTGACT
TGAAAAAATATTCTGCGGAGCAACGACCAACATATTGACTATTTTCAGTA
TCGGGTGGTACCGTACCCATTTTGTCATATTTTTCGCTGATAAATATATA
TATATATATATATATATATATTATACATGATTGCACTCTAGATATAAATA
GATCCCGCGTACGGGAGAAGAGCTCATGGTCGTAGCAGCAGTTTCACGCA
TGGTTACGCAGTTACTGGATGTTGGATCATATTCCAGTGGGTGCGGTGTA
CCTCTCTTCGTGTTTCGTAAGTGCCACGCCATGGATGTAGTTGACTACCG
ACCGTGACAGACGTTCAGGAGGCTACCAAGTAGGGCAGGGTTACAAATAA
TGTGGTTTCGCAGACAAAGTACATCTGAACCAAACGATATATTATACATG
ATTGCACTCTAGATATAAATAGATCTCGCGTATACACCCATACCCACACG
AGCTTTAAATATATTGTCATGCCCCAGATGAACGTAACTACTTTGAATGA
TGACGTGAAATTTTCAAATATTCGCCAAACAGCAAGATGTATGAGCACGT
TTATTCTATATGTCATGAGTCATATACCACTACACGAAGACTATTAAAAC
GAAGAGACCAACGGTGAATTTTATTTATTTGATGTGTCACCCTGCACATT
CCAAAACTCAGACATGGCACTGCTTTTTTGCTCAGGTATACACCGTTGTA
CGTATTATTTAGTCGTGTTTGTCTTGGGGGGGGTGAAAGTTTTGAAGTCA
AGTTCGATAACAATATATGAAACCGAAACCCTTGCCTCCCTCCCTCCCCT
GCCCTGCCCTGCCTTGCCCTGCCTTGCCCGTTCGCGTACCCCCTCGGTTT
CTCCCATAATTCGGTCAGCGTCGCGAGGAAGAAAAACGCCTCCAAGATGA
GGAAGAGGCAAAGCGAGAATTGCTGCGTCAAGAGAAAATAAGGTTGGCGG
AGGAAAGGGTGGAGGAGGAACGCCGTGCACGGCTGCTGCATGAGCGAGAA
GAGCAAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25751:1953..3411-

>mRNA_H-paniculata_contig25751.7016.1 ID=mRNA_H-paniculata_contig25751.7016.1|Name=mRNA_H-paniculata_contig25751.7016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig25751:1953..3411- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTGGTGAAGACGACGGCGCCTCCAAGCGACGAAGCAAGAAGGCCAA
GAAAAAGGAACGAGATAAGAAGGGTGCTGGTGAAGACGACGGCGCCTCCA
AGCGACGAAGCAAGAAGGCCAAGAAAAAGGAACGAGATAAGAAGCGTCGC
GAGGAAGAAAAACGCCTCCAAGATGAGGAAGAGGCAAAGCGAGAATTGCT
GCGTCAAGAGAAAATAAGGTTGGCGGAGGAAAGGGTGGAGGAGGAACGCC
GTGCACGGCTGCTGCATGAGCGAGAAGAGCAAGAGCGTCGCGAGGAAGAA
AAACGCCTCCAAGATGAGGAAGAGGCAAAGCGAGAATTGCTGCGTCAAGA
GAAAATAAGGTTGGCGGAGGAAAGGGTGGAGGAGGAACGCCGTGCACGGC
TGCTGCATGAGCGAGAAGAGCAAGAG
back to top