mRNA_H-paniculata_contig25732.7010.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25732.7010.1
Unique NamemRNA_H-paniculata_contig25732.7010.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5J853_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J853_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.020e-22
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D +RSVSG    VG ++VSH +K QK V +SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:  103 HAPAKRHWDAIQKILGYLKETRDLGITYQRGSGLGLAVYVDASYADTED-KRSVSGLATTVGGTVVSHGSKTQKIVCLSSTEAEYIAAGEGVKEALFVREVLSFVAPE 209
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KY44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY44_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.850e-22
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG    VG ++VSH +K Q  VS+SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:   23 HAPAKRHWDAIQKILGYLKGTRELGITYQRGSALGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 129
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BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KJ49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ49_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.330e-22
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG    VG ++VSH  K Q  VS+SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:  139 HAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGRKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 245
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KZ43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ43_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.260e-21
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG    VG +IVSH +K Q  VS+ S+EA+Y+A G  VKEA+F     +F+ P+
Sbjct:   24 HAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTIVSHGSKTQSIVSLPSTEAEYIAAGEGVKEALFMRVVFSFVAPE 130
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.940e-21
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++      +  Y D+SYA+  D RRSVSG    VG ++VSH +K Q  VS+SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:   65 HAPAKRHWDAIQKILGYLKGTRDLGITYQRESGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 171
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.090e-21
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HWKA+ +IL YL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG    VG +++SH +K Q  VS+SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:  111 HAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPE 217
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BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KMY7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.140e-21
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG    VG ++VSH +KAQ  VS+SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:  926 HAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKAQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 1032
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5JGY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.300e-21
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW AV++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG V  VG ++VSH  K Q  VS+SS+EA+Y+A G  VKEA+F    L+F+ P+
Sbjct:  534 HAPAKRHWDAVQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLVTTVGGTVVSHGRKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPE 640
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KJP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.700e-21
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+  HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D +RSVSG    VG ++VSH +K Q  VS+SS+EA+Y+A G  VKEA+F H  L+F+ P+
Sbjct:  414 HAPAKGHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-KRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVHAVLSFVAPE 520
[Close]
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.130e-21
Identity = 49/108 (45.37%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:  415 HNPSAQHWKAVRQILGYLSRTRTFGLLFK*GRRFQIIAYTDSSYANNFDHRRSVSGDVLRVGNSIVSHFAKAQKTVSVSSSEAQYVAVGRTVKEAMFAHNDLTFMVPD 738
            H P+ +HW A+++ILGYL  TR  G+ ++ G    +  Y D+SYA+  D RRSVSG    VG ++VSH +K Q  VS+SS+EA+Y+A G  V+EA+F   +L+F+ P+
Sbjct:  344 HAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVEEALFLRAELSFVAPE 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25732.7010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J853_9PHAE3.020e-2245.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY44_9PHAE4.850e-2246.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ49_9PHAE6.330e-2246.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ43_9PHAE1.260e-2145.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGY9_9PHAE1.940e-2145.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTI8_9PHAE2.090e-2145.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMY7_9PHAE3.140e-2147.22CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGY2_9PHAE4.300e-2148.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJP4_9PHAE4.700e-2146.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE6.130e-2145.37Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25732contigH-paniculata_contig25732:118..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25732.7010.1prot_H-paniculata_contig25732.7010.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25732 335..790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.2248845-UTR-H-paniculata_contig25732:117..3341622929763.2248845-UTR-H-paniculata_contig25732:117..334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25732 118..334 +
1691481000.5157492-UTR-H-paniculata_contig25732:117..3341691481000.5157492-UTR-H-paniculata_contig25732:117..334Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25732 118..334 +
1622929763.247304-UTR-H-paniculata_contig25732:790..8641622929763.247304-UTR-H-paniculata_contig25732:790..864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25732 791..864 +
1691481000.532048-UTR-H-paniculata_contig25732:790..8641691481000.532048-UTR-H-paniculata_contig25732:790..864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25732 791..864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.2353537-CDS-H-paniculata_contig25732:334..7901622929763.2353537-CDS-H-paniculata_contig25732:334..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25732 335..790 +
1691481000.5243177-CDS-H-paniculata_contig25732:334..7901691481000.5243177-CDS-H-paniculata_contig25732:334..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25732 335..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25732.7010.1

>prot_H-paniculata_contig25732.7010.1 ID=prot_H-paniculata_contig25732.7010.1|Name=mRNA_H-paniculata_contig25732.7010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MEGFILTCLPRWPAFWSRTWSTSPLQADGKWRGRSNLSLPRGDQQLDLAG
QHTRSDISNAVREVVIIIRVPSTGRRLDKYWAISRGRGLLGFCLSRGGGS
RSLHTQIPATPIILITGAQCREMYFVLEIRLLATLRRHRRLFRFRLRRRN
T*
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mRNA from alignment at H-paniculata_contig25732:118..864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25732.7010.1 ID=mRNA_H-paniculata_contig25732.7010.1|Name=mRNA_H-paniculata_contig25732.7010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig25732:118..864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGAACGTCACCTTCCAGTGAAGCATCACCTGCAAGTGCCGAGCCACC
AGCACAAGAACGAAACGAGGCTCCGACACGCTCCCGTTATCATCGAGTCA
ATGAGCTGGTCGATTTTCATTTCATCGGCTCCACGGGACGACCGGACCCG
ATCCACATCAACAGTGCGAGAACCACGAGGTCTCAACCACAATACAGCCA
AGACGGACCTCTACTGAATGGAGGGGTTCATATTGACATGTCTCCCAAGA
TGGCCGGCCTTCTGGTCAAGAACATGGTCGACATCGCCCTTACAGGCCGA
TGGAAAATGGCGAGGAAGAAGTAACCTGTCCCTACCGAGAGGCGATCAGC
AGCTTGATTTGGCTGGCCAACATACTCGATCGGACATCAGCAATGCAGTT
CGGGAAGTGGTAATCATAATCCGAGTGCCCAGCACTGGAAGGCGGTTAGA
CAAATATTGGGCTATCTCTCGCGGACGAGGACTTTTGGGCTTTTGTTTAA
GTAGGGGAGGAGGTTCCAGATCATTGCATACACAGATTCCAGCTACGCCA
ATAATTTTGATCACAGGCGCTCAGTGTCGGGAGATGTACTTCGTGTTGGA
AATTCGATTGTTAGCCACTTTGCGAAGGCACAGAAGACTGTTTCGGTTTC
GTCTTCGGAGGCGCAATACGTAGCAGTGGGGCGCACAGTGAAGGAAGCAA
TGTTTGCTCACAACGACTTGACGTTCATGGTCCCTGACAATTTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25732:118..864+

>mRNA_H-paniculata_contig25732.7010.1 ID=mRNA_H-paniculata_contig25732.7010.1|Name=mRNA_H-paniculata_contig25732.7010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig25732:118..864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGGTTCATATTGACATGTCTCCCAAGATGGCCGGCCTTCTGGTC
AAGAACATGGTCGACATCGCCCTTACAGGCCGATGGAAAATGGCGAGGAA
GAAGTAACCTGTCCCTACCGAGAGGCGATCAGCAGCTTGATTTGGCTGGC
CAACATACTCGATCGGACATCAGCAATGCAGTTCGGGAAGTGGTAATCAT
AATCCGAGTGCCCAGCACTGGAAGGCGGTTAGACAAATATTGGGCTATCT
CTCGCGGACGAGGACTTTTGGGCTTTTGTTTAAGTAGGGGAGGAGGTTCC
AGATCATTGCATACACAGATTCCAGCTACGCCAATAATTTTGATCACAGG
CGCTCAGTGTCGGGAGATGTACTTCGTGTTGGAAATTCGATTGTTAGCCA
CTTTGCGAAGGCACAGAAGACTGTTTCGGTTTCGTCTTCGGAGGCGCAAT
ACGTAGATGGAGGGGTTCATATTGACATGTCTCCCAAGATGGCCGGCCTT
CTGGTCAAGAACATGGTCGACATCGCCCTTACAGGCCGATGGAAAATGGC
GAGGAAGAAGTAACCTGTCCCTACCGAGAGGCGATCAGCAGCTTGATTTG
GCTGGCCAACATACTCGATCGGACATCAGCAATGCAGTTCGGGAAGTGGT
AATCATAATCCGAGTGCCCAGCACTGGAAGGCGGTTAGACAAATATTGGG
CTATCTCTCGCGGACGAGGACTTTTGGGCTTTTGTTTAAGTAGGGGAGGA
GGTTCCAGATCATTGCATACACAGATTCCAGCTACGCCAATAATTTTGAT
CACAGGCGCTCAGTGTCGGGAGATGTACTTCGTGTTGGAAATTCGATTGT
TAGCCACTTTGCGAAGGCACAGAAGACTGTTTCGGTTTCGTCTTCGGAGG
CGCAATACGTAG
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