mRNA_H-paniculata_contig2572.7008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2572.7008.1
Unique NamemRNA_H-paniculata_contig2572.7008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2572.7008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2572contigH-paniculata_contig2572:19421..20417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2572.7008.1prot_H-paniculata_contig2572.7008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2572 19453..20411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.0468082-UTR-H-paniculata_contig2572:19420..194521622929763.0468082-UTR-H-paniculata_contig2572:19420..19452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 19421..19452 +
1691481000.426094-UTR-H-paniculata_contig2572:19420..194521691481000.426094-UTR-H-paniculata_contig2572:19420..19452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 19421..19452 +
1622929763.089186-UTR-H-paniculata_contig2572:20411..204171622929763.089186-UTR-H-paniculata_contig2572:20411..20417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 20412..20417 +
1691481000.4509509-UTR-H-paniculata_contig2572:20411..204171691481000.4509509-UTR-H-paniculata_contig2572:20411..20417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 20412..20417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.063939-CDS-H-paniculata_contig2572:19452..195851622929763.063939-CDS-H-paniculata_contig2572:19452..19585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 19453..19585 +
1691481000.4350364-CDS-H-paniculata_contig2572:19452..195851691481000.4350364-CDS-H-paniculata_contig2572:19452..19585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 19453..19585 +
1622929763.0782979-CDS-H-paniculata_contig2572:20358..204111622929763.0782979-CDS-H-paniculata_contig2572:20358..20411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 20359..20411 +
1691481000.4431047-CDS-H-paniculata_contig2572:20358..204111691481000.4431047-CDS-H-paniculata_contig2572:20358..20411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 20359..20411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2572.7008.1

>prot_H-paniculata_contig2572.7008.1 ID=prot_H-paniculata_contig2572.7008.1|Name=mRNA_H-paniculata_contig2572.7008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MTNCPRFLLQAGWNDSSEHNMCSYEGQNHLSPLFHQPGADVGFSGGQGNT
TAGASPAQSQV*
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mRNA from alignment at H-paniculata_contig2572:19421..20417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2572.7008.1 ID=mRNA_H-paniculata_contig2572.7008.1|Name=mRNA_H-paniculata_contig2572.7008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=997bp|location=Sequence derived from alignment at H-paniculata_contig2572:19421..20417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAACGGCAGCCTGCATTTTTCTTTTCGACTGATGACGAACTGTCCTCGT
TTCCTTCTGCAAGCAGGGTGGAACGACTCGTCGGAACACAACATGTGCTC
TTATGAAGGCCAAAATCACCTCTCTCCCTTGTTTCACCAACCAGGTGCCG
ACGTCGGTTTCTCTGGTGAGGTGTTTCGCGTTTTCTATTTTTGTGCGGGG
AAGATGTTTTTTTTTTTTGTGTGGGCAAGAAGTGCGCTGTACGTGGCATG
TGGTATGTATACGTTGCGCATGTGTGTAAATCGCTTGATCATTTGAGCCG
GAGTACTGCGGCCCATCTAAATCGGAGACAAGCCTCACCCGTTTCTGCAG
TTCCTCCCGACTTCGGCGGGAGAGGAGGAAATCGACCCGAAAATGGGACA
CATCTATGCATGTAGAACGCAACATCGAGAACTCGAAAACCAACAAATTC
GTGACAAGTAGTTGCTGCTGATGATGCGGGTTTTCTCCATGAGCGAATAC
AGGTAACTAATTGTCACTACGTCACGAGCCGGCCTCAACCAAAGGCATAC
AGTTCTTTTCTTCAACTATAACACCCCAAATCCACATATTCGAATCTGCG
TATCCGTAAGTCCTGTTCGATCTTCCTAGTCGGTCGTGCCTTCATTTCGG
GGAACCAGTACACGTCTGCTGATTGTCGTGGGTATGAACAACAGCCCAAT
AATACCTGGTATGGTCCCTGATCACCACATAGTCCGGGTAAATAGTGGAT
GAGGACTACCATATCGAGTGAAGACAAGTTTCTTCTTCGCATTGCGAGAT
AGAGAACAGGGGCGCTTTGGCTGACTGATTCTTGGTCATGCAAAGGACAT
CCTGTTTGTCTCGCTTCCATTTACCCGTATTCATATGACTCTTGCTCGAT
TATTGTCTCTCACGCACCACTGTCTACTGCTGCACCAGGCGGACAAGGCA
ACACCACGGCAGGCGCTAGCCCCGCACAGTCGCAGGTATAGAGCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig2572:19421..20417+

>mRNA_H-paniculata_contig2572.7008.1 ID=mRNA_H-paniculata_contig2572.7008.1|Name=mRNA_H-paniculata_contig2572.7008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig2572:19421..20417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAACTGTCCTCGTTTCCTTCTGCAAGCAGGGTGGAACGACTCGTC
GGAACACAACATGTGCTCTTATGAAGGCCAAAATCACCTCTCTCCCTTGT
TTCACCAACCAGGTGCCGACGTCGGTTTCTCTGATGACGAACTGTCCTCG
TTTCCTTCTGCAAGCAGGGTGGAACGACTCGTCGGAACACAACATGTGCT
CTTATGAAGGCCAAAATCACCTCTCTCCCTTGTTTCACCAACCAGGTGCC
GACGTCGGTTTCTCTGGCGGACAAGGCAACACCACGGCAGGCGCTAGCCC
CGCACAGTCGCAGGTATAGGCGGACAAGGCAACACCACGGCAGGCGCTAG
CCCCGCACAGTCGCAGGTATAG
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