mRNA_H-paniculata_contig25712.7005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25712.7005.1
Unique NamemRNA_H-paniculata_contig25712.7005.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25712.7005.1 vs. uniprot
Match: D7FYY0_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.160e-28
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MVTAVARVGKKTFSPYFAGGGAVSMLYHGFCIVMVSLTVNYLVIPFQMLGLSESLDVWGTFYFSVHVMMAVLFVLAQIVPTKK 249
            M+T  AR GKK  SPY    GA  M YHG C+ +V+LTVNYLVIPFQ+LGL+ESLDVWGTF F +H ++  L+++ Q++PTKK
Sbjct:    1 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQMIPTKK 83
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BLAST of mRNA_H-paniculata_contig25712.7005.1 vs. uniprot
Match: A0A6H5JJU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.420e-25
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MVTAVARVGKKTFSPYFAGGGAVSMLYHGFCIVMVSLTVNYLVIPFQMLGLSESLDVWGTFYFSVHVMMAVLFVLAQIVPTKK 249
            M+T  AR GKK  SPY    GA  M YHG C+ +V+LTVNYLVIPFQ+LGL+ESLDVWGTF F +H ++  L+++ Q++PTKK
Sbjct:  418 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVIALYLVCQVIPTKK 500
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BLAST of mRNA_H-paniculata_contig25712.7005.1 vs. uniprot
Match: A0A835Z8U4_9STRA (MBOAT, membrane-bound O-acyltransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.710e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   19 RVGKKTFSPYFAGGGAVSMLYHGFCIVMVSLTVNYLVIPFQMLGLSESLDVWGTFYFSVHVMMAVLFVLAQIV 237
            RV +K+ SP+F     V  +YH  CI++ S+ +NYLVIPFQML    S  VWG+F++  H+ +AVL++L + V
Sbjct:  414 RVARKSISPHFYKNKTVEQVYHYTCIIINSMFINYLVIPFQMLSWERSTAVWGSFHYFPHIAIAVLYILGRFV 486
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25712.7005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYY0_ECTSI3.160e-2859.04Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JJU3_9PHAE1.420e-2559.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8U4_9STRA3.710e-1245.21MBOAT, membrane-bound O-acyltransferase family-dom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25712contigH-paniculata_contig25712:2459..3187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionacyltransferase
Ec32 orthologEc-19_002900.1
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.8404737-CDS-H-paniculata_contig25712:2458..25721622929762.8404737-CDS-H-paniculata_contig25712:2458..2572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25712 2459..2572 -
1691481000.3547227-CDS-H-paniculata_contig25712:2458..25721691481000.3547227-CDS-H-paniculata_contig25712:2458..2572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25712 2459..2572 -
1622929762.8579745-CDS-H-paniculata_contig25712:3046..31871622929762.8579745-CDS-H-paniculata_contig25712:3046..3187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25712 3047..3187 -
1691481000.3638554-CDS-H-paniculata_contig25712:3046..31871691481000.3638554-CDS-H-paniculata_contig25712:3046..3187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25712 3047..3187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25712.7005.1prot_H-paniculata_contig25712.7005.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25712 2459..3187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25712.7005.1

>prot_H-paniculata_contig25712.7005.1 ID=prot_H-paniculata_contig25712.7005.1|Name=mRNA_H-paniculata_contig25712.7005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MVTAVARVGKKTFSPYFAGGGAVSMLYHGFCIVMVSLTVNYLVIPFQMLG
LSESLDVWGTFYFSVHVMMAVLFVLAQIVPTKKVK
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mRNA from alignment at H-paniculata_contig25712:2459..3187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25712.7005.1 ID=mRNA_H-paniculata_contig25712.7005.1|Name=mRNA_H-paniculata_contig25712.7005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at H-paniculata_contig25712:2459..3187- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACCGCGGTGGCTCGTGTGGGAAAGAAAACGTTTAGCCCATACTT
CGCGGGAGGGGGTGCCGTGAGTATGCTGTACCACGGTTTCTGCATCGTGA
TGGTGTCGCTCACCGTCAACTACCTCGTCATTCCCTTTCAGGTGGGTGAA
CGGGGATGATTTCTTGTATTGGGGGGGGGGGGCGTTCACATAATCACGTA
ATATTGTTAAATGTGGTTCAATTTATATGTATAATAATGTGTTCGATGAA
TTTATCCATCTGGTCGCAGAATAATGCACTCGTAGTTTTTGTTCATGCAG
GGACTGACGTTTTTGCTGGCTTTATTTTGAGCTGTTTTGTCCGAGAGGGG
ACGGCAGGGGGGGGGGGGGGGGGGGGTTGGTCATTGTTTATATTCTATTG
CTGTTCATACTGTATGATACGGAGGTGCTGGCCCTCGTCGCTGTCATCAT
GGTTTAGTGACAAACGTTTGGCCATGACGGGGGGTAGGAGAGAGTAACGC
TTTTAGAAGGCCATTCAATCCTTCCGTGCCCCCCCCCCCTCCCTCTGTTT
CGTTTTTCGTCACTTTTTTTTTTTTCTCTCGGACTTGCGCGGCGGACCCT
GTTGCACACACGCAGATGCTTGGCCTTTCCGAGTCGCTAGATGTATGGGG
AACGTTTTACTTTTCTGTTCATGTCATGATGGCAGTGCTCTTCGTCTTGG
CGCAAATTGTTCCTACGAAAAAGGTAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig25712:2459..3187-

>mRNA_H-paniculata_contig25712.7005.1 ID=mRNA_H-paniculata_contig25712.7005.1|Name=mRNA_H-paniculata_contig25712.7005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig25712:2459..3187- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACCGCGGTGGCTCGTGTGGGAAAGAAAACGTTTAGCCCATACTT
CGCGGGAGGGGGTGCCGTGAGTATGCTGTACCACGGTTTCTGCATCGTGA
TGGTGTCGCTCACCGTCAACTACCTCGTCATTCCCTTTCAGATGGTGACC
GCGGTGGCTCGTGTGGGAAAGAAAACGTTTAGCCCATACTTCGCGGGAGG
GGGTGCCGTGAGTATGCTGTACCACGGTTTCTGCATCGTGATGGTGTCGC
TCACCGTCAACTACCTCGTCATTCCCTTTCAGATGCTTGGCCTTTCCGAG
TCGCTAGATGTATGGGGAACGTTTTACTTTTCTGTTCATGTCATGATGGC
AGTGCTCTTCGTCTTGGCGCAAATTGTTCCTACGAAAAAGGTAAAAATGC
TTGGCCTTTCCGAGTCGCTAGATGTATGGGGAACGTTTTACTTTTCTGTT
CATGTCATGATGGCAGTGCTCTTCGTCTTGGCGCAAATTGTTCCTACGAA
AAAGGTAAAA
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