mRNA_H-paniculata_contig257.7001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig257.7001.1
Unique NamemRNA_H-paniculata_contig257.7001.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: D8LCM6_ECTSI (Methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM6_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 2.090e-108
Identity = 167/248 (67.34%), Postives = 201/248 (81.05%), Query Frame = 3 
Query:  228 TIAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDSIFQRLNGVLETLDPEFEALIDPDALGENGGSAIAEEMKAAGIRDVSVSKFSVPLVLSPDARLGDIWDYYTLSSPLGQTILSLEEKGRTNAGQEGAEIFESRMAKDWVEGRMPLGLTEMDDVDGDGGKSNTTGTSRLARVFYARALIIVGRK 971
            TIAKA+ GA+VHATDFAPAM+DLI+ RAAEEGVSNV A+VA+GEA TGF DGSVDAVTCTWGL+FMP WQ+A+QEFSRVLK+DGVVA T+WE  E S+FQR+  V+ETL P F+ LID +ALGE+GGSA+ EEMKAAG+ DVS SKFSVP+VLS DAR  DIW++YT SSPLGQT+ +LE+KGRTN  QE  +IFE  M K+WVEGR PLGL + DD    G   ++   SR  R++Y RAL++VGRK
Sbjct:  127 TIAKAMPGATVHATDFAPAMMDLIRKRAAEEGVSNVVASVADGEALTGFGDGSVDAVTCTWGLLFMPNWQRAIQEFSRVLKRDGVVAVTLWERQEGSVFQRMRNVVETLVPGFQLLIDAEALGEDGGSAVVEEMKAAGLCDVSASKFSVPVVLSADARPRDIWEHYTESSPLGQTMSTLEKKGRTNVRQEAMDIFEDAMNKEWVEGRTPLGLQKEDDAVAGG---SSPAASRPPRIYYVRALVVVGRK 371
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A6H5JCB5_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB5_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 6.140e-59
Identity = 134/299 (44.82%), Postives = 165/299 (55.18%), Query Frame = 3 
Query:  156 QQALDGAGKTSGPGCGLRRRRAGHTIAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDSIFQRLNGVLETLDPEFEALIDPDALGENGGSAIAEEMKAA-------------------------GIRDVSVSKFSVPLVLSPDARLGDIWDYYTLSSPLGQ-TILSLEEKGRTNAGQEGAEIFESRMAKDWVEGRMPLGL-TEMDDVDGDGGKSNTTGTSRLARVFYARALIIVGRK 971
            Q  LD A     P   + + R G    KA+ GA++HATDFAP M+DLI+ RA EEGVSNV A+VA+GEA TGF D +VDAVTCTWGL+FMP WQ+A+QE                     S+FQR+  V+ETL P F+ LID +ALGE+GGSA+ EEMKA+                         G        F  P    P   LG            GQ T+ +LE+KGRTN  QE  +IFE  M K+W EGR PLGL  E DD+ G  G S T   SR  R++Y RAL++VGRK
Sbjct:  111 QVVLDVASAGGEPAITIAKAREG-IYRKAMPGATIHATDFAPVMIDLIRKRAVEEGVSNVVASVADGEALTGFGDETVDAVTCTWGLLFMPNWQRAIQE--------------------GSVFQRIRNVVETLVPGFQLLIDAEALGEDGGSAVVEEMKASWTSPRTTGAIKPWLTLSIGSSFRLPGSATSRRPSFRCPWSSRPTRGLGTSGSTTPNPRHSGQQTMSTLEKKGRTNIRQEAMDIFEDSMNKEWAEGRTPLGLQNEGDDLAG--GSSPTA--SRPPRIYYVRALVVVGRK 384
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A835YPT1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.730e-14
Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 3 
Query:  228 TIAKAVSGASVHATDFAPAMVDLIKARAA----EEGVSNVKAAVAEGEAQ-------------------TGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDS 518
            +IA+ +  A+VHATD++P MV+ +  R A     EG++NV   VA+GE+                    + F+D S+DA+TC++G+MFMP WQ+A++EF RVLK +G+    VW   +++
Sbjct:   91 SIARLLPQATVHATDYSPGMVEALNTRVAVLRETEGLANVHTGVADGESDILTLLCAVVAACICRAQNLSQFEDASMDAITCSFGIMFMPAWQKAIREFYRVLKPNGIAIINVWGPEQEA 210
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A5J4Y136_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y136_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 2.150e-14
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3 
Query:  231 IAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVW 500
            + +A+  ASV ATD +PA V LI   AA EGV+NV A  A+ +    F D + DAVTC++GLMFMP  Q+A+QE  RVLK  G+  ATVW
Sbjct:  309 LGQAIPNASVVATDLSPASVSLISEYAASEGVTNVTAQPADAQHLQEFDDNTFDAVTCSYGLMFMPDHQKALQEAHRVLKLGGLYVATVW 398
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A5J4XFB5_9CHLO (Methyltransf_25 domain-containing protein n=2 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XFB5_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-12
Identity = 58/182 (31.87%), Postives = 92/182 (50.55%), Query Frame = 3 
Query:  231 IAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVW----ESHEDSIFQRLNGVLETLDPEFE-----ALIDPDALGENGGSAIAEEMKAAGIRDVSVSKFS----------VPLVLSPDARLGDIWD 719
            +AK +   S+ ATD +PA   L+   AA +GV+NV A   + +  T F   S  AVTC++G MFMP   +A+QE +RVL+  G++ ATVW    + H    FQ L   L  + P+F       + DP  L ++        ++AA    V+ +++S          V L++ P ++L  + D
Sbjct:   23 LAKELPHVSISATDLSPASAPLVHKYAASQGVTNVIAQTVDAQDLTDFSSNSFAAVTCSYGFMFMPDLDKALQEANRVLQPGGLLVATVWAEVEKCHNMQAFQGLAKAL--MGPKFSFTTPWPITDPHELQQH--------IQAANFEKVTCAEYSHNFQYPIDGFVRLLIGPHSQLKPMLD 194
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: UPI001FAD3396 (methyltransferase domain-containing protein n=1 Tax=Geothrix sp. SG189 TaxID=2922721 RepID=UPI001FAD3396)

HSP 1 Score: 75.9 bits (185), Expect = 3.750e-12
Identity = 56/173 (32.37%), Postives = 85/173 (49.13%), Query Frame = 3 
Query:  228 TIAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDSIFQRL-NGVLETLDPEFEALIDPDALGENGGSAIAEEMKAAGIRDVSV-SKFSVPLVLSPDARLGDIWDYYTLSSP 740
            ++  A +GA V ATDFAP MVD ++AR A EG+ ++ A V +G+A     D S DA     GL+F P     + E  RVL+  G  A   W    D    +L    +  + P  +    P A     G  +   M+AAG ++V+V +  +   +L+P+A     W  +T S+P
Sbjct:   58 SLQAARAGAEVLATDFAPGMVDRLRARIAAEGLPHISAEVMDGQALA-LPDASFDASASVLGLIFFPDLDCGLGELRRVLRGGGRAAVVCWRDPADLPLMKLVQQAIRQVAPGLQPPSTPPAWARLTGGGLKARMEAAGFQEVAVVTSTATQRILTPEAY----WAGFTRSAP 225
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A536LVJ9_9CHLR (Class I SAM-dependent methyltransferase n=4 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536LVJ9_9CHLR)

HSP 1 Score: 75.9 bits (185), Expect = 5.670e-12
Identity = 62/189 (32.80%), Postives = 92/189 (48.68%), Query Frame = 3 
Query:  258 VHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDSIFQRLNGVLETLDPEFEALIDPDALGENGGSAIAEEMKA------AGIRDVSVSKFSVPLVLSPDARLGDIWDYYT-LSSPLGQTILSLEEKGRTNAGQEGA 803
            V ATD AP MV++ + +A+ +GV NV+  + +GE + G    S DAVTC WG+MFMP   + + +    LK  G +AA VW   E + F  L         E  A  DP A G  G  ++A+  K       AG  D+ V  F +P+ +       + W + T +  PL   + +L +  R   G+E A
Sbjct:  102 VLATDMAPEMVEVARDKASAQGVGNVEFRLVDGE-ELGVPPASFDAVTCRWGMMFMPEPLKFLYQAHEALKPGGRIAAAVWGPPERNPFITLPMATVRKHVEVPAQ-DPTAPG--GIFSLADRSKLEFVFERAGFGDIRVEGFELPMAVWDSGY--EYWQFCTAIMGPLRALLETLPKALRDQIGEEVA 284
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A7M4DFY3_9MICO (Demethylmenaquinone methyltransferase n=1 Tax=Occultella aeris TaxID=2761496 RepID=A0A7M4DFY3_9MICO)

HSP 1 Score: 75.5 bits (184), Expect = 6.540e-12
Identity = 79/272 (29.04%), Postives = 117/272 (43.01%), Query Frame = 3 
Query:   96 GYQEYVSGIQARDKGRGRLVQQALDGAGK---------TSGPGCGLRRRRAGHTIAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESH-EDSIFQRLNGVLETLDPEFEALIDPDALG--ENGGSAIAEEMKAAGIRDVSVSKFSVPLVLSPDARLGDIWDYYTLSSPLGQTIL-------------SLEEKGRTNAGQEGAEIFESRMAKDW 836
            GY E+V+       G  R+  +AL+  G           +GPG        G  +A A  GA+V ATD+APAMV   +ARAA EG++N  A V +   +    D S D     +G+M +P    A+ E  RV +  G V    + S  E    Q     L+T+ P FE L DP  L    +  + +   +  AG+RDV V       V +   R   +WD+   S+P+   +L             SL+E+ R  A   G  +  + +   W
Sbjct:   32 GYAEHVA------PGEQRICAEALELVGLRPDESFLDVAAGPG--------GLGLAAARLGATVLATDWAPAMVAQFEARAASEGLANASARVMDAH-ELRLADDSFDVTGSQFGVMLVPDQPAALGEMVRVTRPGGRVLLVAYGSPAEFEALQLFVAALQTVAPGFEGLPDPPPLEFQVSDPAVLHGRLVDAGLRDVRVDTTRQERVEAATGR--QVWDWMMYSNPITAVLLADVGAADRAKIRASLDERIRDRADPSGVAVLTAPLNIGW 286
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BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A7G5M0V4_9ACTN (Class I SAM-dependent methyltransferase n=2 Tax=unclassified Mumia TaxID=2621872 RepID=A0A7G5M0V4_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 8.430e-12
Identity = 79/269 (29.37%), Postives = 122/269 (45.35%), Query Frame = 3 
Query:   99 YQEYVS-GIQARDKGRGRLVQQALDGA--GKTSGPGCGLRRRRAGHTIAKAVSGASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDSIFQRLNG---VLETLDPEFEALIDPDALGE--NGGSAIAEEMKAAGIRDVSVSKFSVPLVLSPDARLGDIWDYYTLSSPLGQTIL---------------SLEEKGRTNAGQEGAEIFESRMAKDW 836
            Y E+V+ G Q+      RLV    D A     +GPG        G  +A A  GA+V ATD+APAMV   + RA  EG++N  A V +  A    +D   D     +G+M +P   +A+ E  RV K  G V    + S  +  F+ L G    L+T+ P+FE L DP  L    +    ++E + AAG+++V V       ++    +  + WD+   S+P+   IL               +L+E  R  AG+ G  +  + +   W
Sbjct:   26 YAEHVAPGEQSLSAAALRLVGLTPDEAFLDVAAGPG--------GLGLAAARLGATVLATDWAPAMVTQFEERARTEGLTNATARVMDAHALD-LEDDRFDVTGSQFGVMLVPDQAEALCEMVRVTKAGGHVLVIAYGSPAE--FEALQGFISALQTVAPDFEGLPDPPPLEFQLSDPDVLSERLVAAGLQNVQVDTTQQERLMLSTGQ--EAWDWMLSSNPITGIILDDVGVSEHDRARMRSALDETIRNRAGEAGVAVLTAPLNIGW 281
[Close]
BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Match: A0A7C3NYH6_9CHLR (Methyltransferase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3NYH6_9CHLR)

HSP 1 Score: 73.9 bits (180), Expect = 1.990e-11
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 3 
Query:  249 GASVHATDFAPAMVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRWQQAVQEFSRVLKKDGVVAATVWESHEDSIFQRL-NGVLETLD-----PEFEALIDPDALGENGGSAIAEEMKAAGIRDVSVSKFSVPLVLSPDARLGDIWD 719
            G SV ATD    MV + + RAAE G++N++A VA+ EA   F D S DA TC +G+MF P+ ++A  E  RVLK  G  A +VW+  E S  Q + N  L  L      P+F+A   P          +   ++AAG  DV V   S+PL +  ++ L  +W+
Sbjct:   73 GGSVVATDLVEEMVAVTRRRAAEAGIANLEARVADLEALD-FPDASFDAATCRFGVMFCPQPERAAAEVRRVLKPGGRFALSVWDMPEKSPAQTVVNEALGRLGKPQPAPDFDA---PGIYQLAPPGKLQRLLEAAGFADVRVE--SLPLTMEYES-LEALWE 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig257.7001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCM6_ECTSI2.090e-10867.34Methyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JCB5_9PHAE6.140e-5944.82Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835YPT1_9STRA1.730e-1437.50S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A5J4Y136_9CHLO2.150e-1452.22Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A5J4XFB5_9CHLO2.500e-1231.87Methyltransf_25 domain-containing protein n=2 Tax=... [more]
UPI001FAD33963.750e-1232.37methyltransferase domain-containing protein n=1 Ta... [more]
A0A536LVJ9_9CHLR5.670e-1232.80Class I SAM-dependent methyltransferase n=4 Tax=Ch... [more]
A0A7M4DFY3_9MICO6.540e-1229.04Demethylmenaquinone methyltransferase n=1 Tax=Occu... [more]
A0A7G5M0V4_9ACTN8.430e-1229.37Class I SAM-dependent methyltransferase n=2 Tax=un... [more]
A0A7C3NYH6_9CHLR1.990e-1137.42Methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig257contigH-paniculata_contig257:38707..42841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.4
Seed ortholog evalue7e-79
Seed eggNOG ortholog2880.D8LCM6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiE/COQ5 methyltransferase family
EggNOG OGs2CZJF@1,2SANJ@2759
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-03_002320.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size974
Cds size690
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.0018463-CDS-H-paniculata_contig257:38706..389341622929762.0018463-CDS-H-paniculata_contig257:38706..38934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 38707..38934 -
1691480999.9413414-CDS-H-paniculata_contig257:38706..389341691480999.9413414-CDS-H-paniculata_contig257:38706..38934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 38707..38934 -
1622929762.0182364-CDS-H-paniculata_contig257:39211..393251622929762.0182364-CDS-H-paniculata_contig257:39211..39325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 39212..39325 -
1691480999.957208-CDS-H-paniculata_contig257:39211..393251691480999.957208-CDS-H-paniculata_contig257:39211..39325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 39212..39325 -
1622929762.0369875-CDS-H-paniculata_contig257:39743..398141622929762.0369875-CDS-H-paniculata_contig257:39743..39814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 39744..39814 -
1691480999.9672296-CDS-H-paniculata_contig257:39743..398141691480999.9672296-CDS-H-paniculata_contig257:39743..39814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 39744..39814 -
1622929762.0508451-CDS-H-paniculata_contig257:40162..402741622929762.0508451-CDS-H-paniculata_contig257:40162..40274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 40163..40274 -
1691480999.9745948-CDS-H-paniculata_contig257:40162..402741691480999.9745948-CDS-H-paniculata_contig257:40162..40274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 40163..40274 -
1622929762.063475-CDS-H-paniculata_contig257:40978..411261622929762.063475-CDS-H-paniculata_contig257:40978..41126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 40979..41126 -
1691480999.9819973-CDS-H-paniculata_contig257:40978..411261691480999.9819973-CDS-H-paniculata_contig257:40978..41126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 40979..41126 -
1622929762.0800993-CDS-H-paniculata_contig257:41775..417921622929762.0800993-CDS-H-paniculata_contig257:41775..41792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 41776..41792 -
1691480999.989782-CDS-H-paniculata_contig257:41775..417921691480999.989782-CDS-H-paniculata_contig257:41775..41792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 41776..41792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.0968564-UTR-H-paniculata_contig257:41792..418371622929762.0968564-UTR-H-paniculata_contig257:41792..41837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 41793..41837 -
1691480999.9976916-UTR-H-paniculata_contig257:41792..418371691480999.9976916-UTR-H-paniculata_contig257:41792..41837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 41793..41837 -
1622929762.1148834-UTR-H-paniculata_contig257:42144..422211622929762.1148834-UTR-H-paniculata_contig257:42144..42221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 42145..42221 -
1691481000.0065956-UTR-H-paniculata_contig257:42144..422211691481000.0065956-UTR-H-paniculata_contig257:42144..42221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 42145..42221 -
1622929762.1325934-UTR-H-paniculata_contig257:42679..428411622929762.1325934-UTR-H-paniculata_contig257:42679..42841Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 42680..42841 -
1691481000.0152209-UTR-H-paniculata_contig257:42679..428411691481000.0152209-UTR-H-paniculata_contig257:42679..42841Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 42680..42841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig257.7001.1prot_H-paniculata_contig257.7001.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig257 38707..41792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig257.7001.1

>prot_H-paniculata_contig257.7001.1 ID=prot_H-paniculata_contig257.7001.1|Name=mRNA_H-paniculata_contig257.7001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MVDLIKARAAEEGVSNVKAAVAEGEAQTGFQDGSVDAVTCTWGLMFMPRW
QQAVQEFSRVLKKDGVVAATVWESHEDSIFQRLNGVLETLDPEFEALIDP
DALGENGGSAIAEEMKAAGIRDVSVSKFSVPLVLSPDARLGDIWDYYTLS
SPLGQTILSLEEKGRTNAGQEGAEIFESRMAKDWVEGRMPLGLTEMDDVD
GDGGKSNTTGTSRLARVFYARALIIVGRK*
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mRNA from alignment at H-paniculata_contig257:38707..42841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig257.7001.1 ID=mRNA_H-paniculata_contig257.7001.1|Name=mRNA_H-paniculata_contig257.7001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4135bp|location=Sequence derived from alignment at H-paniculata_contig257:38707..42841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAAAGATAAAGTTCGCGTGGAATAACTCCGCCGAGGCGTACGTCGG
TAACATCCAGGGAGGGAGCGGGGCGAACGGATCTCCCACTCCTTTGGTTA
CCAAGAGTATGTCAGTGGGATACAAGCCCGCGACAAGGGTCGTGGTAGAC
TTGTTCAACAAGGTGATGCTATGGTGCGGCGCTGCTGTGCCTGCTCGGTG
GTGTAAATCGTCGGTGGATGCGATGATGTTGTCGAAATCATTGTTGTCGT
CGACGTCCACGTACCCGTTGCTGCTGCCTCTACAATTGTCGTTGGTTGTG
GTATTCAATATCGATGTTGTCGTTGTTCGTGAAGAAGGCGCGAGCAGTTG
AGATGGTGACAGCTGTGTGGCCGACGCCTAATCGTATCCCAAGGAGCACG
TCGGTCAATCCATCGGAGCTCCATTGGGACAGGGACCGGAAGAAATGGTG
CCTATGAGGGACTCCAAAATTCATGTGGCGGCGTGGCGGATCACCTTGAA
AACTGCGCGACCCGAAACCTCAGTCTAATAAATGGTGGATCACGATGATG
TTGTCCATCAACCTTCAGGGCAATACCTAATAAAAAGTCCCATCTGCTAC
TGCCGTGCTCGCAATAAGAGCACTTGACGGGGCCGGGAAAACCAGTGGTC
CTGGATGTGGCCTCCGTCGGCGGAGAGCCGGCCATACCATCGCAAAGGTA
TAGCAAGAAAGAACACGCTGTCGGGCAGTTTTACGTTCTTTTGGCGCTCG
CTTGTCATTGACTACTACTGTAGTTGTCGTCAGCTATAGCATTGCTTGGT
GGTTTCGACGTTGGTCGGGCTTGTTTTCTTGAGTCGGTTCGGCGTACGTT
TGGTCTTGGGACCTATGACTTGTGTTCCGCGCTGATTGGTGGTGCATCAT
TCAGACCTCTTCGTGGCCTCGGACCATGTCTACACGTCGAAAAAGGCCCG
CGGGGTACCCTTTTATTGTCTTTGCCCCGCCCCTAAAACACGCCTCCGAA
ACAGGCGGTTTCTGGCGCATCGGTCCACGCCACGGATTTCGCACCAGCGA
TGGTTGATCTTATCAAGTGAACAACTCGTGAACAAGGCTCCGTATCGTAC
GTGGGTGCCGGCAGGAAGAAATTCTAGATGTTTCTGTTCAATTCCACAAT
GGTCGACCCTGTCAGGACCCATTTTTTTACGTGTACCATCTTCCACAATG
ACGCACTCGGTATGCAAGGAGATCTGCGTTGCTTGATTTCGCGAATGGTC
GGTGATATTTCTTCAAAACAGGCGACTGTTTGAAGCTTTTGTTTCGTGTG
GGTACGGTCGATGAACTCGAGACATGGGCATTGCTGTTTTGCAGGATGCA
CGAATGCCCCTCCTTCGATATGTACTCCCGAAAACCGAAACCATAAACTA
CTCAGAACAAACTTTAATCGCAACAACACATCTATATTTCGTATGTTTTT
TCACTCCGTACAATAGACCCAACCCGAGAGAGAAGAGAGAGAAGTAGGTC
TGAGAGACAAGATAAGTAGGTCTGATCGAAAGTACCCAACGGCACCGGTG
CTGGAGCAACGACACAAGGGAGGCCAAGGGCTGCGCTAAGACAGCTTCCC
TACCCCCGTTCTGGGAGGAGGAAGAAGTGACAAAATCTTGGGGAATGGGC
CGTTTTTCCTTTGGTGTTTCACGTGTGTGTGTCCACCATGACTTGCCACT
GTCTTGTGAGTGAAGGGCGAGGGCGGCCGAAGAAGGGGTTTCCAACGTGA
AGGCGGCGGTGGCGGAAGGGGAAGCGCAGACTGGATTCCAGGATGGGTCG
GTGGATGCGGTGACTTGCACCTGGGGTCTCATGTTCATGCCGAGGTGGCA
GCAGGCTGTCCAGGTGCGAAACCTCATAGTCATGCTGGAATACTACAGTA
GCGCGCCAGGGGTGTAGTTGCCTTGGTTCGCTCACCTTCTTCGACACTCG
TGCCTCGTGGTCTTCGCTCGCGCGCGCTTCGAGAGCCTGCAACGTTTCTT
GTTTCCCTGACCTCCGCCCGATGTTGGAGATGGGATGCGCAGGGCGCTTC
CTGTATCGGTCGTGGATGTGGCTGCCAAGAGAATGACGGCGATCGGTGTG
TAGCTCCCCTGCTTCACGAAGCTATCCACTCCTGTCTATTTACCAGCTTA
AAAACTCAGCATGTCACAATATCAGGCATTTCACTTGTTACTGCAGGCTG
GGACGGATTTCCTGCTATGCTTCGAACGCCGCACCGCACAGCACAAGTGA
AGCTTGATGCTCCTACTCGTCGTCCTTTTGACCGACATCAGGACTTTCCT
CGCACACTACCCCGGAAGTGATAAGTTTGCTTAGCCCTCCGGGTTCTCGC
ACAACCTGGAGTTCAATGAATATCCGGTTGGGTGCTAGGCTTCTCCATAG
GTTTCGGTTACTTGCGCGTTAAATTACTTTTGCCTGTGGTGTCTTGTCCC
GTCGCACATGCCGGTTTTACTGTTCTCTCGACCACTCCTCCATCCAAACC
ACACAACCAAAACCGATACATCAAATTCCCCGAAAAATCGTTCTGCGATG
GATTGTCGTATCGTCAGGAGTTTTCTCGCGTCCTGAAAAAGGATGGGGTG
GTGGCGGCAACGGTGTGGGAGAGTCACGAAGACTCCATCTTTCAACGCCT
CAACGGGGTGCTGGAAACCCTTGATCCAGGTGAGATGACCCGCGCTAAAG
ATTCTGATTCAAACCTTCAGTCGGTCACGATAGACGCGGTGAGTTCGCGC
TCAAACGGCACTCTTATCAGTATACATTTACCGCTGTCTACTTGATGCCC
TTATCGCTCTGCTTGATCTGGCCGCACAGGAGGCGGGTGCTGCCTCAACG
AAAGCGAGTGTTGTCTTCCTTGGGCGTAACGTTCATCGTTCGGTCAGTCG
TTGATAGGTGTTTTACTTTGCCCCCCCCCCGAAGTTCAGTCTGTGTTTTT
TCCTCGAGAACCAGGTAGAATCTCACTTGGCTTGTTTTTGCGATCGTGGT
GCTTTGGTGTTCGCTGCTGACTCGAAGAGTTCGAGGCTCTGATCGACCCT
GACGCGCTCGGGGAGAATGGAGGATCAGCCATCGCCGAGGAGATGAAGGT
CCGTCAAAGTTTTCACTTCCAGAAATTCAAGCTGTTGCTGTACGTTGTGG
GCGCTGTCGTCTTGAACCGTACTTTTTGCAACCATCCCTGATCATCCACC
CAAGACCTCGCACCGGTTCCGCCAAGCCAGGGACGGCATCGGCGGCTTCA
CCGGGGAGTGAAAATCAGACAATGCCCACAACTCTCTACAACATGCATCC
ACTATTTTTGCCTACAACGTCGTCGTGTTTTTGTACGGAGAAGTGTTTCC
CTGCTGAAGCCTGAAACATCTTCAGCGTCCAAGTCTATCGACTCAGTGAT
GGTGTTACCGCACAACCGTGAAATAGTGTTCCGTTGGGTGAAAAACGCGT
GCTCTTCGCCTTGATTCCTCAGCCATCCCCGTGCTCTCTGGGCCGCCATC
TGATACTTCGAAGCAGGCTGCCGGGATCCGCGACGTCTCGGTATCCAAGT
TCTCCGTGCCTCTTGTTCTCTCACCTGACGCGCGTCTTGGCGACATCTGG
GACTACTATACCCTCTCCTCGCCGCTGGGGGTAAGATCATCAGTCTGAGA
ACAAGCTAACGTAGGAGCTGACAGCGCACCATGGGCACACAGCAGGCGTT
GCTCGGTCCCATAACCTGTCACGATGTCTATCTCTTCTTCTGCGTTGTTG
TTGTCTCTCTCCGGCGCATCATGCGGCTAAAGTCTTGCGTGTTCGATGTC
CCCGTGAAAGGACGGGACAGACTCCCGCCCCCCTCCTCGCCACTGATATA
CGTGAGTGTTGCTTCCCCCTTCCCGGTGTCTTCATGGCTTCCTAAAGATC
TCGTCAGCAAACGATTTTGTCTCTGGAAGAAAAAGGGCGGACGAACGCTG
GGCAAGAGGGGGCGGAGATATTCGAGAGCCGGATGGCCAAGGACTGGGTG
GAAGGACGAATGCCCCTCGGCCTCACCGAAATGGACGATGTTGATGGCGA
CGGTGGGAAAAGTAACACCACGGGAACGTCCCGGTTAGCTCGCGTTTTCT
ATGCGCGCGCTTTGATCATTGTAGGCCGCAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig257:38707..42841-

>mRNA_H-paniculata_contig257.7001.1 ID=mRNA_H-paniculata_contig257.7001.1|Name=mRNA_H-paniculata_contig257.7001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig257:38707..42841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGATCTTATCAAATGGTTGATCTTATCAAGGCGAGGGCGGCCGAA
GAAGGGGTTTCCAACGTGAAGGCGGCGGTGGCGGAAGGGGAAGCGCAGAC
TGGATTCCAGGATGGGTCGGTGGATGCGGTGACTTGCACCTGGGGTCTCA
TGTTCATGCCGAGGTGGCAGCAGGCTGTCCAGGGCGAGGGCGGCCGAAGA
AGGGGTTTCCAACGTGAAGGCGGCGGTGGCGGAAGGGGAAGCGCAGACTG
GATTCCAGGATGGGTCGGTGGATGCGGTGACTTGCACCTGGGGTCTCATG
TTCATGCCGAGGTGGCAGCAGGCTGTCCAGGAGTTTTCTCGCGTCCTGAA
AAAGGATGGGGTGGTGGCGGCAACGGTGTGGGAGAGTCACGAAGACTCCA
TCTTTCAACGCCTCAACGGGGTGCTGGAAACCCTTGATCCAGGAGTTTTC
TCGCGTCCTGAAAAAGGATGGGGTGGTGGCGGCAACGGTGTGGGAGAGTC
ACGAAGACTCCATCTTTCAACGCCTCAACGGGGTGCTGGAAACCCTTGAT
CCAGAGTTCGAGGCTCTGATCGACCCTGACGCGCTCGGGGAGAATGGAGG
ATCAGCCATCGCCGAGGAGATGAAGAGTTCGAGGCTCTGATCGACCCTGA
CGCGCTCGGGGAGAATGGAGGATCAGCCATCGCCGAGGAGATGAAGGCTG
CCGGGATCCGCGACGTCTCGGTATCCAAGTTCTCCGTGCCTCTTGTTCTC
TCACCTGACGCGCGTCTTGGCGACATCTGGGACTACTATACCCTCTCCTC
GCCGCTGGGGGCTGCCGGGATCCGCGACGTCTCGGTATCCAAGTTCTCCG
TGCCTCTTGTTCTCTCACCTGACGCGCGTCTTGGCGACATCTGGGACTAC
TATACCCTCTCCTCGCCGCTGGGGCAAACGATTTTGTCTCTGGAAGAAAA
AGGGCGGACGAACGCTGGGCAAGAGGGGGCGGAGATATTCGAGAGCCGGA
TGGCCAAGGACTGGGTGGAAGGACGAATGCCCCTCGGCCTCACCGAAATG
GACGATGTTGATGGCGACGGTGGGAAAAGTAACACCACGGGAACGTCCCG
GTTAGCTCGCGTTTTCTATGCGCGCGCTTTGATCATTGTAGGCCGCAAGT
AACAAACGATTTTGTCTCTGGAAGAAAAAGGGCGGACGAACGCTGGGCAA
GAGGGGGCGGAGATATTCGAGAGCCGGATGGCCAAGGACTGGGTGGAAGG
ACGAATGCCCCTCGGCCTCACCGAAATGGACGATGTTGATGGCGACGGTG
GGAAAAGTAACACCACGGGAACGTCCCGGTTAGCTCGCGTTTTCTATGCG
CGCGCTTTGATCATTGTAGGCCGCAAGTAA
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