mRNA_H-paniculata_contig257.7000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig257.7000.1
Unique NamemRNA_H-paniculata_contig257.7000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig257.7000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig257contigH-paniculata_contig257:4697..5280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size584
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig257.7000.1prot_H-paniculata_contig257.7000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig257 4860..5273 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.3590987-UTR-H-paniculata_contig257:4696..48591622929761.3590987-UTR-H-paniculata_contig257:4696..4859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 4697..4859 +
1691480999.6127238-UTR-H-paniculata_contig257:4696..48591691480999.6127238-UTR-H-paniculata_contig257:4696..4859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 4697..4859 +
1622929761.3988974-UTR-H-paniculata_contig257:5273..52801622929761.3988974-UTR-H-paniculata_contig257:5273..5280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 5274..5280 +
1691480999.6303945-UTR-H-paniculata_contig257:5273..52801691480999.6303945-UTR-H-paniculata_contig257:5273..5280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig257 5274..5280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929761.384414-CDS-H-paniculata_contig257:4859..52731622929761.384414-CDS-H-paniculata_contig257:4859..5273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 4860..5273 +
1691480999.6218746-CDS-H-paniculata_contig257:4859..52731691480999.6218746-CDS-H-paniculata_contig257:4859..5273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig257 4860..5273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig257.7000.1

>prot_H-paniculata_contig257.7000.1 ID=prot_H-paniculata_contig257.7000.1|Name=mRNA_H-paniculata_contig257.7000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MKRSIFSLAPCNKARTTVWCIATHKCTVFCLLSPFARKEGYGASYYLCPK
RLGHNLLRNIFAICVFVESKAYHSKACTFRLHVSIFKISFEFKTVENRVS
QYVFLDGGGLRDFAKQPKRPKWAVKHGQRLTKYQVKI*
back to top

mRNA from alignment at H-paniculata_contig257:4697..5280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig257.7000.1 ID=mRNA_H-paniculata_contig257.7000.1|Name=mRNA_H-paniculata_contig257.7000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=584bp|location=Sequence derived from alignment at H-paniculata_contig257:4697..5280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGCGTCACAGCGAGCATTGCCATAGCATCCTGTTCAGCGGACGCCAA
TGGCACTTTCCCCTGTACATGCGAGAATTGTGATATTATACTTTTGTGTT
GATAGCGGGGTGCAGATATAGCGATCACCCTCACAACAATGCGTATGTCC
GCACCTTGCATGGATGAAAAGAAGCATCTTCTCTTTGGCACCATGCAACA
AAGCTCGGACAACTGTATGGTGCATCGCCACACACAAATGCACGGTATTT
TGCTTGCTGTCACCCTTTGCCCGGAAAGAAGGGTATGGGGCATCGTACTA
CCTCTGTCCCAAAAGACTGGGTCATAACTTACTGCGTAATATCTTTGCAA
TTTGTGTTTTCGTGGAAAGTAAAGCATATCATTCGAAAGCCTGCACGTTC
AGATTGCATGTATCTATATTCAAAATAAGTTTTGAATTCAAGACGGTTGA
GAATCGGGTATCTCAATACGTGTTTTTGGACGGGGGGGGGCTGAGAGATT
TTGCAAAACAGCCGAAGAGGCCGAAATGGGCTGTGAAACATGGCCAACGG
TTGACAAAGTATCAAGTAAAAATCTGATTAAGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig257:4697..5280+

>mRNA_H-paniculata_contig257.7000.1 ID=mRNA_H-paniculata_contig257.7000.1|Name=mRNA_H-paniculata_contig257.7000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig257:4697..5280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAAGCATCTTCTCTTTGGCACCATGCAACAAAGCTCGGACAAC
TGTATGGTGCATCGCCACACACAAATGCACGGTATTTTGCTTGCTGTCAC
CCTTTGCCCGGAAAGAAGGGTATGGGGCATCGTACTACCTCTGTCCCAAA
AGACTGGGTCATAACTTACTGCGTAATATCTTTGCAATTTGTGTTTTCGT
GGAAAGTAAAGCATATCATTCGAAAGCCTGCACGTTCAGATTGCATGTAT
CTATATTCAAAATAAGTTTTGAATTCAAGACGGTTGAGAATCGGGTATCT
CAATACGTGTTTTTGGACGGGGGGGGGCTGAGAGATTTTGCAAAACAGCC
GAAGAGGCCGAAATGGGCTGTGAAACATGGCCAACGGTTGACAAAGTATC
AAGTAAAAATCTGAATGAAAAGAAGCATCTTCTCTTTGGCACCATGCAAC
AAAGCTCGGACAACTGTATGGTGCATCGCCACACACAAATGCACGGTATT
TTGCTTGCTGTCACCCTTTGCCCGGAAAGAAGGGTATGGGGCATCGTACT
ACCTCTGTCCCAAAAGACTGGGTCATAACTTACTGCGTAATATCTTTGCA
ATTTGTGTTTTCGTGGAAAGTAAAGCATATCATTCGAAAGCCTGCACGTT
CAGATTGCATGTATCTATATTCAAAATAAGTTTTGAATTCAAGACGGTTG
AGAATCGGGTATCTCAATACGTGTTTTTGGACGGGGGGGGGCTGAGAGAT
TTTGCAAAACAGCCGAAGAGGCCGAAATGGGCTGTGAAACATGGCCAACG
GTTGACAAAGTATCAAGTAAAAATCTGA
back to top