mRNA_H-paniculata_contig2561.6973.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2561.6973.1
Unique NamemRNA_H-paniculata_contig2561.6973.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2561.6973.1 vs. uniprot
Match: D7FVD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD6_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.560e-34
Identity = 133/380 (35.00%), Postives = 170/380 (44.74%), Query Frame = 2 
Query:  605 QELLLLQNTLAQDLLRTDAFRAKAMASRIQRFWRCRSSSASLLGDRRQGSATSKAVAPCYEAEILPSDKKIIAPEIKWYRRCARVSQS*FVSVYG*GVGHAVRSISSPRGQQLTLI*PCYPRLLSELSGRAPASGLTLEALRQRVATRQRNKERYRNKSSQGEIANVSHTMTGSDRRGRVMGKTYESLLERQDKAVHLGAALHQSEPERIAATTRRRQRLVNFRNLQDQLLEYPHIG------------DGESKRHRRESGTSHDDNWKLAEDSAQRDRAQRAHFHAARAAANGGNKWWSTSLPADIG-HGEPVDIRRVRPAWPIYFFHPEGSLG---------DPTEHGGGVNGAQFDSDQASLWWYLYASTRDEQATG 1678
            QEL LL  T A+  LR D  RA+A A  IQR WRC S                       +    PS                               G +VR  + P G   T      P + S  S   P   +TLEAL +RVA+RQ+ KE  R+              T  +R G +  K        QD+A  L AA +QS   R +A  RR  RL NFR LQDQLL  P +             +G S+RH+    T+ D NW   ED AQRDRAQRAH  A  AA + G K W+TSLP+D+G + + +DIRR+ PAWP +     G+L            ++ G G    +FDSD+ASLWWY+Y ST   Q +G
Sbjct:    6 QELNLLLKTPAEHCLRIDELRAEASARHIQRVWRCHS-----------------------QGYSCPS------------------------------TGASVRDSARPIGLGKTFF--TAPEISSR-SDHIPTLDITLEALGRRVASRQQAKEHLRD--------------TKQERSGGMTNKMA------QDRAWQLTAAFNQSHTGRCSAAKRRSTRLANFRKLQDQLLRPPKLNSTGRTSVSAKRREG-SQRHQMVMDTAVDKNWYETEDPAQRDRAQRAHKLALAAAKDSGIKPWATSLPSDVGGYDDLLDIRRLVPAWPTHTVGGRGALDFVDGFIRNQHTSDGGSGTGDRKFDSDEASLWWYVY-STNGAQTSG 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2561.6973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVD6_ECTSI3.560e-3435.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2561contigH-paniculata_contig2561:9241..13699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000720.1
Exons7
Model size2879
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.257242-UTR-H-paniculata_contig2561:9240..100431622929757.257242-UTR-H-paniculata_contig2561:9240..10043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 9241..10043 -
1691480998.021612-UTR-H-paniculata_contig2561:9240..100431691480998.021612-UTR-H-paniculata_contig2561:9240..10043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 9241..10043 -
1622929757.2714362-UTR-H-paniculata_contig2561:10461..106351622929757.2714362-UTR-H-paniculata_contig2561:10461..10635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 10462..10635 -
1691480998.029903-UTR-H-paniculata_contig2561:10461..106351691480998.029903-UTR-H-paniculata_contig2561:10461..10635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 10462..10635 -
1622929757.2874625-UTR-H-paniculata_contig2561:10888..110941622929757.2874625-UTR-H-paniculata_contig2561:10888..11094Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 10889..11094 -
1691480998.037397-UTR-H-paniculata_contig2561:10888..110941691480998.037397-UTR-H-paniculata_contig2561:10888..11094Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 10889..11094 -
1622929757.2998092-UTR-H-paniculata_contig2561:11328..115651622929757.2998092-UTR-H-paniculata_contig2561:11328..11565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 11329..11565 -
1691480998.0448709-UTR-H-paniculata_contig2561:11328..115651691480998.0448709-UTR-H-paniculata_contig2561:11328..11565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 11329..11565 -
1622929757.3139458-UTR-H-paniculata_contig2561:11843..121161622929757.3139458-UTR-H-paniculata_contig2561:11843..12116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 11844..12116 -
1691480998.0548604-UTR-H-paniculata_contig2561:11843..121161691480998.0548604-UTR-H-paniculata_contig2561:11843..12116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 11844..12116 -
1622929757.3265376-UTR-H-paniculata_contig2561:12312..126271622929757.3265376-UTR-H-paniculata_contig2561:12312..12627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 12313..12627 -
1691480998.0665014-UTR-H-paniculata_contig2561:12312..126271691480998.0665014-UTR-H-paniculata_contig2561:12312..12627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 12313..12627 -
1622929757.37376-UTR-H-paniculata_contig2561:13503..136991622929757.37376-UTR-H-paniculata_contig2561:13503..13699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 13504..13699 -
1691480998.097994-UTR-H-paniculata_contig2561:13503..136991691480998.097994-UTR-H-paniculata_contig2561:13503..13699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 13504..13699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.343803-CDS-H-paniculata_contig2561:12627..128911622929757.343803-CDS-H-paniculata_contig2561:12627..12891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 12628..12891 -
1691480998.0773058-CDS-H-paniculata_contig2561:12627..128911691480998.0773058-CDS-H-paniculata_contig2561:12627..12891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 12628..12891 -
1622929757.359204-CDS-H-paniculata_contig2561:13092..135031622929757.359204-CDS-H-paniculata_contig2561:13092..13503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 13093..13503 -
1691480998.0885327-CDS-H-paniculata_contig2561:13092..135031691480998.0885327-CDS-H-paniculata_contig2561:13092..13503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 13093..13503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2561.6973.1prot_H-paniculata_contig2561.6973.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2561 12628..13503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2561.6973.1

>prot_H-paniculata_contig2561.6973.1 ID=prot_H-paniculata_contig2561.6973.1|Name=mRNA_H-paniculata_contig2561.6973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MTASVIRSKEVMNKINSRRDRARQIARRRREIGLRMGPTEVHRINDATAY
GREEGLSLSRIESQVLGAAMTIQSTFRGRIARRRLRLQQRATMIIQATYR
GYRERRVFLATTARVKRARAEERQAQERRSRIVSMKQELLLLQNTLAQDL
LRTDAFRAKAMASRIQRFWRCRSSSASLLGDRRQGSATSKAVAPCYEAEI
LPSDKKIIAPEIKWYRRCARVSQS*
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mRNA from alignment at H-paniculata_contig2561:9241..13699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2561.6973.1 ID=mRNA_H-paniculata_contig2561.6973.1|Name=mRNA_H-paniculata_contig2561.6973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4459bp|location=Sequence derived from alignment at H-paniculata_contig2561:9241..13699- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGACTTACATGGGAGGTTTGCAGAGGGGGGGAAATGTGCCACTGAGG
GTAAAGGAAAAAGCGGTGGGAGAGAGGGAGGCAATGGCCCGGCGCTGGAA
GATGTAGAAATTTGTGCTACACGTAATCTAGATCACGCCGAGACTATTGC
ATTGGAAGAACATCTCCAATGTCAGGATGGATGCACCATCGCACCGATGA
CAGCATCGGTAATAAGGTCGAAAGAAGTGATGAACAAAATAAACTCGAGG
AGAGATAGAGCGCGTCAGATCGCCCGACGGCGACGGGAGATTGGGCTGAG
AATGGGTCCAACCGAGGTGCATAGAATCAACGACGCAACTGCATATGGCA
GAGAAGAAGGCCTCTCACTATCGAGGATAGAAAGTCAGGTATTAGGAGCA
GCAATGACAATCCAGAGCACCTTTCGTGGTCGAATTGCACGTCGGAGACT
TCGATTGCAGCAACGAGCCACGATGATCATCCAGGCCACGTACCGAGGGT
ATCGAGAGCGCAGAGTGTTTCTTGCCACAACGGCTAGGGTGAAGCGAGCG
AGAGCTGAGGAACGACAGGCTCAGGAGCGGCGTTCAAGAATCGTGTCGAT
GAAACAGGTGCATCTTACCCTCCTCGAATTTGGGGCCATATTTCCGGCGT
CTCGATAGATCTTACCGTGCGATAGGGCTAGCTAGTTGAGGTATTGCAAG
GTTGGAGCAATGTATCTGGTTGTTGTGTGGAATCTACGTAGCCAGAAAAC
GTCAGTTCTTGGTAAGCTTACAGTTAAGTCGCCTCGCAATCATTGCTTCT
TGCCCCAGGAACTACTGCTGCTCCAAAATACGCTGGCGCAAGACTTATTA
CGGACAGATGCCTTCCGTGCAAAGGCTATGGCCAGCCGTATCCAACGATT
CTGGCGCTGTCGTTCGAGCAGCGCCTCGTTGCTGGGTGATCGTCGGCAGG
GTTCTGCCACATCCAAAGCTGTGGCGCCATGTTATGAGGCGGAAATACTT
CCTTCTGACAAAAAGATAATCGCTCCCGAAATTAAATGGTATAGAAGGTG
CGCGAGGGTCTCACAGTCGTGATTTGTGAGTGTGTATGGTTGAGGTGTCG
GCCATGCTGTCAGATCGATTTCAAGTCCCAGGGGTCAACAATTGACTCTG
ATCTAGCCCTGCTATCCCCGATTGCTTTCTGAACTTAGCGGTCGAGCTCC
GGCGTCAGGTCTTACGTTGGAAGCCCTTCGGCAGAGAGTTGCCACACGAC
AGCGCAACAAAGAGCGTTACCGGAACAAGAGTAGTCAGGGAGAAATCGCC
AATGTGTCACATACCATGACCGGGAGCGATCGAAGAGGTAGAGTAATGGG
GAAGACGTACGAATCACTACTGGAGCGTCAAGATAAAGTGAGTGGTTATG
TACACAGCATGAAACTCAGTCATCGACGACATGACTACCGCACGCTGGTC
TGTGTACATAGTTCTGCCCGCTTAACCAATCTATGAGAGTATGAGAGTGG
ACCACATTGCGATGGGTTACATATTATGGTTCACACAACCCCGAGTACTC
ACGCTCTTCATCATGGCGGTGATCATCTCGCAGGCAGTGCACCTCGGGGC
TGCTTTACACCAATCCGAGCCTGAGCGAATCGCTGCCACAACTCGTCGAC
GCCAACGTCTGGTGAATTTCAGAAATCTTCAAGATCAGCTCTTAGAATAT
CCCCATATAGGAGACGGAGAGAGCAAGCGACATAGGCGTGAATCCGGCAC
TTCCCACGATGACAACTGGAAGTTGGCCGAGGATTCTGCACAAAGAGATC
GAGCACAGAGGGCACACTTCCATGCGGCAAGAGCTGCTGCCAATGGAGGC
AACAAGGTGTGGATGAGGGCGCGGGTATCCCAAATGGTTGGTAGTGGTGA
CAGTATCATTTTCTTGGACTCACACTTCAAGTTATACGGGGAGGGACGAC
CCTGGAGCGACTTGCATCTGGTTCATGTCTATTCCGAGAAAGTTACTGGG
GAAGACGTTGTTGGTACCCCCTGTCATCGGCACAGCAAACGTGAATATTA
GACCTCTGGGTGCTGTTATCGCTTGGACAGTTTACCAATCAACTCGGTAC
CCTCGTCCTCCTTCTTTAACCTCCCGGTGCCTAGTGGTGGAGTACGAGCT
TGCCAGCGGACATTGGACATGGGGAGCCTGTCGATATCCGTCGCGTTCGC
CCCGCCTGGCCAATTTATTTTTTCCACCCAGAAGGATCACTCGGTGACCC
CACTGAGCACGGTGGCGGGGTGAACGGTGCGCAATTCGACAGCGACCAGG
CATCTTTATGGTGGTACCTCTACGCGTCCACGAGAGACGAGCAAGCCACA
GGTTCAACGAAAGCGGTGCGCAGCGTTGATGTCGTAGCTTATGCTGCATC
CGTTTGTCTCTCCGAACGCGAAGGGTGTTCAACCCTTTGTTGACCCTACC
TCGAATAATCCCACCACCTATTACCTTCTTTTTCACCACGCCATTTCAAA
CTAAACTAGAGTCACTGTTAATAGTCTACTTCGCATCGCCATGATGTAGT
TGCCATCGAGTCCTCCATTTCCGAGGTCCCAGTGGGTTGGATCTGTGAAA
CATTGTTGTGTGGTCGCCATATCCTTGCCTGACACTCTATCTTCCGAAAC
CTATTGCTAAGTCCACGTGTCGACGTCAGCAGGATGACGTTTTTACCGAA
CTATTGGAAAGGGTCAAAATGGGTTCCGCGAGGCAAAAGAAGGCTGCTGA
ACAACTGGAGATACAACATGAAGCTAGAGTAATCCGCAAGACGCAGGCAC
TACTGAACAAGGTACTTGTGCCCGCGAGCGAAGTATAATGGAAGCATTTT
ATGGACTGCCTCTTCAAACGTTCAGAATCTAAAATATCGATATCGACGTC
TCCAAGTGTCGCTTCAATTTAAGAAGCTACCTTTCCCGGCTGTTACGCTC
TACCCAAGTTGAGTTGACGATATTATACTGCCTGCCTTTGCCTTGAAAAA
TGTGATCTCCCCGCAGTTGGGTCCACCCAAAACGTACCATCCGACGCTTC
TGTCGCGCCCTTAGGTTATTCGCTGTCGACAGGCCGCAAGATGCCCCACC
CTATCATATCTCCGGGGACGCGAGACAGCGCGCCAGTGTTGTGCGGCGAT
TGCTTTGCAGGCACACTTTCGCGGGCATCTTGGACGTCGGAAGACGGCTA
GACTTCGGGCGGAAATGCGTGTTTTCGGAGCACTGCAGGTGAACGGAGTT
TTGCGAGCAAATATATTATATATGTACTGGAGTTTACTTCAAGGGTATAC
ATCACACTATCTGTCCTCTGTGGATGTGCATAAAGTTGGATGGAGATCCT
TGGATACATCTGCTGTGCTTGGGGGTCTGAAACGGTAAACGACTTTGGCG
ACTAGATGCTATCATATACGCCCGAGGAGAACAACACTTGCGCTTGTAGA
AGCTATGATATTTAAGAACTGCAGCTCCTCCCAAACAATTGTGTGATGAA
ATAAGTGTGGGGCTTCCATTGTTGCGTGTGATTCAGATACCTGGACGCAA
TCTTGCCGTAGGCTTCTTCTTAGCGGTACTTGTCGGGATCGTTGAGGCTT
TTTCGTCGGAACCTCTTATACATTCCTCCTTTGATTGATATGAAATGCCA
ATCTAGGTTCTTGTCGATGAGCTCCGGCGACCAGAGTTCGAGGAAACAGG
CACCTCGGACCCGATCCACTATCTTGCAGCCACCCTCGCTTGTTGTGCTG
ACAGGACACAATCAGAAGCAAGTCGCGCCGTATTGGCCGCAGTAACCGCT
CGTCGGGCGGTACCGCTTCCATAAACCGCTGCTTTATCCGAAACCAACGA
AGACACATCGGCTGGGGGACTGCATCCTACCTGCTAGTCTCGAGAGCCCC
GAGAAGAGGCGGCAACTAGTGCTAGTGGTCACACAAACATAAATTTTTCC
GCCTTAGCCCTCCCACCAGTCAGTGATTCCGTCGGGGATAAATCAATTGC
ATCATCAACTGCAGGTAAAGGTAGCACAGGGCATGGTCCAGGTGCTGATC
TCTCAGGCCGTCTTTCCTCTCACCGGGATCTAGTGTCCCCGAATAGCACG
GTGATCACAGACAAGAGGCGTGGGAGCATCAACGGTACCGACGGATCTAT
CTATATATGATAGAAGCAACGGTGAAGATTTTGCGAACATTCAAGGAGGC
ACATCTCGCGTAGATGCTGACTCTGTCGAATGCTCGGATACACCAGAGAA
GCCGATAGTGTGTGTACCGAGTTCGACCTAGACGAGTGACTGTTACTATT
CGGGATAAAGGCAGCCTAGGGACAGATATTTTTGGGTAGGGGTACCACAT
AGGCTATACAAGACTGTGATACTCTTGGTCTAGAAGGTACCAGGTCGATT
TGGCCTTGATGTAAATGTATTTTTTATTGCTGGCAAACACAACAGAGTCG
ACCTGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2561:9241..13699-

>mRNA_H-paniculata_contig2561.6973.1 ID=mRNA_H-paniculata_contig2561.6973.1|Name=mRNA_H-paniculata_contig2561.6973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig2561:9241..13699- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGCATCGGTAATAAGGTCGAAAGAAGTGATGAACAAAATAAACTC
GAGGAGAGATAGAGCGCGTCAGATCGCCCGACGGCGACGGGAGATTGGGC
TGAGAATGGGTCCAACCGAGGTGCATAGAATCAACGACGCAACTGCATAT
GGCAGAGAAGAAGGCCTCTCACTATCGAGGATAGAAAGTCAGGTATTAGG
AGCAGCAATGACAATCCAGAGCACCTTTCGTGGTCGAATTGCACGTCGGA
GACTTCGATTGCAGCAACGAGCCACGATGATCATCCAGGCCACGTACCGA
GGGTATCGAGAGCGCAGAGTGTTTCTTGCCACAACGGCTAGGGTGAAGCG
AGCGAGAGCTGAGGAACGACAGGCTCAGGAGCGGCGTTCAAGAATCGTGT
CGATGAAACAGATGACAGCATCGGTAATAAGGTCGAAAGAAGTGATGAAC
AAAATAAACTCGAGGAGAGATAGAGCGCGTCAGATCGCCCGACGGCGACG
GGAGATTGGGCTGAGAATGGGTCCAACCGAGGTGCATAGAATCAACGACG
CAACTGCATATGGCAGAGAAGAAGGCCTCTCACTATCGAGGATAGAAAGT
CAGGTATTAGGAGCAGCAATGACAATCCAGAGCACCTTTCGTGGTCGAAT
TGCACGTCGGAGACTTCGATTGCAGCAACGAGCCACGATGATCATCCAGG
CCACGTACCGAGGGTATCGAGAGCGCAGAGTGTTTCTTGCCACAACGGCT
AGGGTGAAGCGAGCGAGAGCTGAGGAACGACAGGCTCAGGAGCGGCGTTC
AAGAATCGTGTCGATGAAACAGGAACTACTGCTGCTCCAAAATACGCTGG
CGCAAGACTTATTACGGACAGATGCCTTCCGTGCAAAGGCTATGGCCAGC
CGTATCCAACGATTCTGGCGCTGTCGTTCGAGCAGCGCCTCGTTGCTGGG
TGATCGTCGGCAGGGTTCTGCCACATCCAAAGCTGTGGCGCCATGTTATG
AGGCGGAAATACTTCCTTCTGACAAAAAGATAATCGCTCCCGAAATTAAA
TGGTATAGAAGGTGCGCGAGGGTCTCACAGTCGTGAGAACTACTGCTGCT
CCAAAATACGCTGGCGCAAGACTTATTACGGACAGATGCCTTCCGTGCAA
AGGCTATGGCCAGCCGTATCCAACGATTCTGGCGCTGTCGTTCGAGCAGC
GCCTCGTTGCTGGGTGATCGTCGGCAGGGTTCTGCCACATCCAAAGCTGT
GGCGCCATGTTATGAGGCGGAAATACTTCCTTCTGACAAAAAGATAATCG
CTCCCGAAATTAAATGGTATAGAAGGTGCGCGAGGGTCTCACAGTCGTGA
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