mRNA_H-paniculata_contig25539.6952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE) HSP 1 Score: 155 bits (393), Expect = 9.960e-42 Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 1
Query: 25 GEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVL 315
GE I+PYY E+LQALHPLF+L+ KGTEGGVVDNAAAAVARMIMAAPAA+PMDQVLPV LSALPLK+DR+ENE VYTCLLGLIH+RHPE L LD ++
Sbjct: 938 GEVIVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENETVYTCLLGLIHLRHPEALRLLDPIM 1034
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.930e-30 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 1
Query: 22 SGEAILPYYLEILQALHPLFSLSGKG-TEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVL 315
+GE+I P+ LE+LQ L P+F +GKG TEGG++DNAAAAVAR++MAAP AVPM+QVLP LLSALPLK D ENE VY C++GL+ MRHP LA L ++
Sbjct: 1384 AGESITPHVLELLQLLAPIFQKAGKGSTEGGLLDNAAAAVARIVMAAPGAVPMEQVLPALLSALPLKVDAQENETVYGCVIGLLKMRHPAALASLPAIM 1482
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S2D6V2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6V2_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.300e-24 Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 4 SVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLA 297
V+ S E + P+YL +LQ LHPLF + V+DNAAAAVARM+ A+ A++P QVLPV L LPLK D NENEAVY CL GLI MRHP+ +A
Sbjct: 35 GVMALASPETVAPHYLTLLQHLHPLFQMDPT-LHAAVIDNAAAAVARMMTASLASMPTAQVLPVFLGCLPLKDDMNENEAVYACLAGLIEMRHPDAMA 131
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A067CRP9_SAPPC (Importin N-terminal domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRP9_SAPPC) HSP 1 Score: 103 bits (258), Expect = 1.590e-23 Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 1 LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEF 324
L +LV +SG ++ P YL++LQALHPLF+ E GVVDNAA+AVA+MIM P +VP+D V+PV L ALPLKAD E E+V+TCLLGL+ ++P L + V F
Sbjct: 919 LGMLVKMSGASLAPQYLQVLQALHPLFA----SEEEGVVDNAASAVAKMIMTHPDSVPLDAVMPVFLKALPLKADFTETESVFTCLLGLLQAQNPVVLNAMPQVAAIF 1022
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7R9Z5S6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z5S6_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.150e-22 Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 25 GEAILPYYLEILQALHPLFSLS-GKG-TEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLA 297
GE + P Y +ILQA+ PLF + +G VDNAAAAV+RMIMA+P VPM QVLP LL ALPLK D EN+ VY CLLGL+ M P+ +A
Sbjct: 85 GETVAPQYGQILQAISPLFGIDPAQGDASAAAVDNAAAAVSRMIMASPGNVPMSQVLPALLKALPLKNDMTENDTVYKCLLGLLQMNQPDAVA 177
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A1V9ZV71_9STRA (Importin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV71_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.680e-21 Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 1 LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEF 324
+ +LV +SG + YL++LQALHPLF + + GVVDNAA+AVA+MIMA AVP+D VLPV L ALPLKAD E E+V+TCLLGL+ ++P L + V F
Sbjct: 919 IGMLVKMSGANLASQYLQLLQALHPLF----ESEDEGVVDNAASAVAKMIMAHGEAVPLDAVLPVFLKALPLKADFTETESVFTCLLGLLQAQNPAVLNSMPQVASIF 1022
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S1BKM5_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKM5_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.270e-21 Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 37 LPYYLEILQALHPLFSLSGKGTEGGV-------VDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARL 303
+P Y +IL AL PLF L G GGV VDNA AAVARMIMA+P VP+ QVLP +L+ +PL++D +ENE VY CLLGL+HM HP+ +A +
Sbjct: 966 IPQYPQILTALSPLFVLEKAGPSGGVTDPAGACVDNAVAAVARMIMASPENVPVGQVLPTILANVPLRSDFSENETVYECLLGLLHMNHPDAVANV 1061
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S2VZD1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZD1_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.280e-21 Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 25 GEAILPYYLEILQALHPLFSLSGKGTEGGV--VDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLAR---LDVVLGEFFSLGGK 342
G+ I+ Y +ILQA+ PLF+L ++ +DNAAAA++RMIMA+PA VPM QVLPVLL ALPLK D ENE VY CLLGL+ M + +A + + E S G K
Sbjct: 188 GDLIVTVYPQILQAISPLFALDQNTSDSSAAAIDNAAAAISRMIMASPANVPMGQVLPVLLRALPLKNDMTENETVYQCLLGLLQMNQEDAVANKAEIRRIFTEATSEGSK 298
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A1V9YGZ1_9STRA (Importin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGZ1_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 7.950e-21 Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 1 LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEFF-SLG 336
L LV +SG ++ YL+ILQALHPLF + + GVVDNAA+AVA+MIM +VP+D VLPV L ALPLKAD E E+V+ CLLGL+ ++P L + V F SLG
Sbjct: 921 LGTLVKMSGASLSSQYLQILQALHPLF----ESEDEGVVDNAASAVAKMIMTHQESVPLDAVLPVFLKALPLKADFTETESVFNCLLGLLQAQNPAVLNAMPQVAAIFAQSLG 1029
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S3XPI9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPI9_HETAK) HSP 1 Score: 95.1 bits (235), Expect = 1.150e-20 Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 46 YLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEF 324
Y E+LQAL PLF T+G DNAAAAV RM+ +AP AVP++QVLP +L ALPLKAD +EN VY CL GL+ R P LA L +LG +
Sbjct: 308 YPELLQALSPLFQ-EVPNTDGAAADNAAAAVCRMVSSAPGAVPLEQVLPAVLGALPLKADMSENRTVYKCLAGLLSERRPPALAALAQILGVY 399 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25539.6952.1 >prot_H-paniculata_contig25539.6952.1 ID=prot_H-paniculata_contig25539.6952.1|Name=mRNA_H-paniculata_contig25539.6952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIback to top mRNA from alignment at H-paniculata_contig25539:191..798+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25539.6952.1 ID=mRNA_H-paniculata_contig25539.6952.1|Name=mRNA_H-paniculata_contig25539.6952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=608bp|location=Sequence derived from alignment at H-paniculata_contig25539:191..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25539:191..798+ >mRNA_H-paniculata_contig25539.6952.1 ID=mRNA_H-paniculata_contig25539.6952.1|Name=mRNA_H-paniculata_contig25539.6952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig25539:191..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |