mRNA_H-paniculata_contig25378.6912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25378.6912.1
Unique NamemRNA_H-paniculata_contig25378.6912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25378.6912.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.970e-10
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  181 RSLCMDAFNIVLTKSCSKRGGYLPIKTFQLVSLEMCMMCRNFSTLHVRVAIDTPRRLWATSADQPSP 381
            RS C+    + L ++C  +  Y   K  QL SLE+CM CR++ TLH+ V   TPRRL A +AD PSP
Sbjct:  133 RSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLA-AADAPSP 198
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BLAST of mRNA_H-paniculata_contig25378.6912.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.080e-9
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  181 RSLCMDAFNIVLTKSCSKRGGYLPIKTFQLVSLEMCMMCRNFSTLHVRVAIDTPRRLWATSADQPSP 381
            RS C++A  I L ++C+    Y   K  QL SLE C+ CRN+ TLH++V    PRRL A  AD P P
Sbjct:  110 RSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLAR-ADAPPP 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25378.6912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE9.970e-1046.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI8.080e-946.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25378contigH-paniculata_contig25378:1209..2960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.3763435-CDS-H-paniculata_contig25378:1209..14151622929748.3763435-CDS-H-paniculata_contig25378:1209..1415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25378 1210..1415 -
1691480994.3084283-CDS-H-paniculata_contig25378:1209..14151691480994.3084283-CDS-H-paniculata_contig25378:1209..1415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25378 1210..1415 -
1622929748.3913863-CDS-H-paniculata_contig25378:2782..29601622929748.3913863-CDS-H-paniculata_contig25378:2782..2960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25378 2783..2960 -
1691480994.3183808-CDS-H-paniculata_contig25378:2782..29601691480994.3183808-CDS-H-paniculata_contig25378:2782..2960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25378 2783..2960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25378.6912.1prot_H-paniculata_contig25378.6912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25378 1210..2960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25378.6912.1

>prot_H-paniculata_contig25378.6912.1 ID=prot_H-paniculata_contig25378.6912.1|Name=mRNA_H-paniculata_contig25378.6912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
GLYGQSRCCSKSALYGLSSSQPLIRRCAYMGCTACSTMYPVGWKAAAAGI
FQDEVDRQSGRSLCMDAFNIVLTKSCSKRGGYLPIKTFQLVSLEMCMMCR
NFSTLHVRVAIDTPRRLWATSADQPSPS
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mRNA from alignment at H-paniculata_contig25378:1209..2960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25378.6912.1 ID=mRNA_H-paniculata_contig25378.6912.1|Name=mRNA_H-paniculata_contig25378.6912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig25378:1209..2960- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTCT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTATATGGGCTGTACGG
CCTGCTCTACGATGTACCCCGTCGGATGGAAAGCGGCGGCAGCTGGCATC
TTTCAAGACGAGGTGGATAGACAATCGGGTGAGAGAGGCGCCAGACAGGT
CTTGACACTGTATGAATCTATCGATTTAGGATAGTATGCATCAACCGACG
GTAATACGCTGACTGCCAAGGGCATGTCTGTGCCAAGTATTTGGGTGAGG
CATCTGGGATTCTGAAGGTGTCTCATGATAGCTAAAATAATATTAAAAAC
AGCACATTGTCTGATGGTACTAACGAAAATACAATACACCGCCGAAGATG
AAGTCACTGACATGAGACACATTTGACAGTGAAGAAAAGGTATGAGAAGT
AGGCTGTCTGTATCAAGAGACAGTTCATATTGTGGGACTCGCTACGAGTG
TTCCTTTTGATACCCGTATCGATGGAAATACTGTTATTCCAATGAGTAGA
GAAATTAATAATGTGATCTCGGCATATAATTGCGCTATCCCCCGATTATT
TGGTTGTCAGCTGTCCTCTTGACAGCTTTTGTCAAGGCGTGTTCGACTGG
CGTGTGTTTCGCGTATTCGCTTTTTCATTCTACCTTCGATATGTGGAAAA
TCTTTTAAAAGTCACACTGGAATCGGTGTTGATTCAACAATAGTATGAAC
GTGTTCAACCTAGGCTCTAGCGCCCCCCCCCCCCAACGCCCTTGCAGAAC
ACTCAAAACATACTCGTAGAAGGTAAGCAGCATGGTACGCGTTCTTCTAT
TTATGAACAAGGATTCGGAATGTGAAAGGATTTTTGCAAAATTCGAACAG
TCTGGGCTAATTTGTTTTCGAAGTCACGGCGCTTTGACGGTTTTTGAAAC
ACCTCACGCTGAGCAAGGTGGAATTATCTCGGAACAACTCGCTGAACAAA
TTTGGAGCGTACTCATGGTCGTAGTCCTCGGATATAAATGTTTCCGTTCC
TCGCGCGAGATGGCTCAAACGATGTGCACGATTGTGAGGGGAAAACGCTC
ATCTGTTTGATGACCTCTATACATGAATTTTCAGTGGTCGAGATGCTTGG
TAAGTAGGCCGAGATAATTCAGAGTAATTTAGTTTAGTGCTCACTTATGG
TGCTGAGGGTTTGGAAGCGAGATTTCGCCGAGACCATGATGTCGGCTACA
TTTCCAAAAGCATGCAGTCGAAAGAGGAGCCATGGCGGCCACTGACTATC
GTACTAGTAATTGTACCCATTACGATCCAGCGGCGCTTGTTGCTGAGCAA
CCATGTGAGACCGAGTTTTCGTCGCGTGAAACTATCTTTGTGGATGGACA
GCGATAGTAGGACTGCAGTGATGGTTGTGTACGGCGACACCGTATTTTGA
CTCCAGTAACACTCGTGTTCGGCCATTGCACTGTTGGGCACAACTTCACT
CGTACATGTGAGCCAGCGATGATTGTTCGGTTGCCGTTGCTTCAGGCCGT
AGCCTCTGTATGGATGCCTTCAACATCGTGCTCACCAAGTCTTGCTCAAA
GCGGGGAGGTTACTTGCCCATCAAGACCTTTCAGCTGGTTTCGCTGGAGA
TGTGCATGATGTGCCGCAACTTCAGTACGCTACACGTGAGGGTGGCGATA
GACACACCGCGACGACTGTGGGCGACTTCTGCCGATCAGCCATCGCCTTC
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig25378:1209..2960-

>mRNA_H-paniculata_contig25378.6912.1 ID=mRNA_H-paniculata_contig25378.6912.1|Name=mRNA_H-paniculata_contig25378.6912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig25378:1209..2960- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTCT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTATATGGGCTGTACGG
CCTGCTCTACGATGTACCCCGTCGGATGGAAAGCGGCGGCAGCTGGCATC
TTTCAAGACGAGGTGGATAGACAATCGGGGTCTGTACGGCCAGTCAAGGT
GTTGCAGCAAATCCGCACTGTACGGTCTCTCATCGTCGCAGCCTCTGATA
CGTAGGTGTGCTTATATGGGCTGTACGGCCTGCTCTACGATGTACCCCGT
CGGATGGAAAGCGGCGGCAGCTGGCATCTTTCAAGACGAGGTGGATAGAC
AATCGGGCCGTAGCCTCTGTATGGATGCCTTCAACATCGTGCTCACCAAG
TCTTGCTCAAAGCGGGGAGGTTACTTGCCCATCAAGACCTTTCAGCTGGT
TTCGCTGGAGATGTGCATGATGTGCCGCAACTTCAGTACGCTACACGTGA
GGGTGGCGATAGACACACCGCGACGACTGTGGGCGACTTCTGCCGATCAG
CCATCGCCTTCGGCCGTAGCCTCTGTATGGATGCCTTCAACATCGTGCTC
ACCAAGTCTTGCTCAAAGCGGGGAGGTTACTTGCCCATCAAGACCTTTCA
GCTGGTTTCGCTGGAGATGTGCATGATGTGCCGCAACTTCAGTACGCTAC
ACGTGAGGGTGGCGATAGACACACCGCGACGACTGTGGGCGACTTCTGCC
GATCAGCCATCGCCTTCG
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