mRNA_H-paniculata_contig25244.6879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A085MUK1_9BILA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MUK1_9BILA) HSP 1 Score: 135 bits (339), Expect = 1.870e-33 Identity = 75/214 (35.05%), Postives = 121/214 (56.54%), Query Frame = 1
Query: 43 LGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVEKTSRIPA-MSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCG-----------LWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFK 648
+GD +YI I R+R+ + + + Q+ Y++ +++KF+V+ + + SKG P P+E +EM++ PY+ AVG LM T +RPDI+ V+ F ENPGPAH K V +I YI EL + + +S G L + A+ D+ + +D+RRS SG V++L G + W +R+Q T EA+YVA+SE+ K++ F+
Sbjct: 167 VGDPSYYIGLEIHRDRRNKSIVIGQKAYIERILEKFNVQDCKPVACPWESSMKHSKGMSPTAPDESKEMSRIPYKAAVGSLMFLMTCSRPDISFETSKVSQFSENPGPAHWKAVKRIFRYIKGTKELRLVFRSKSEGDKGQEGTKCDSLQLTAFCDSDWPGDIDSRRSTSGYVLILCGGPVSWSTRVQTGIAQSTVEAEYVAISEATKEIKWFR 380
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL) HSP 1 Score: 132 bits (331), Expect = 2.210e-33 Identity = 72/214 (33.64%), Postives = 121/214 (56.54%), Query Frame = 1
Query: 10 TQLGGRIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVEKTSRIPA-MSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFK 648
T L R + +DLG A++ + I+RN++ EL +DQR Y++ ++D+F++ + + L K PK+ +E EEM K PY+EAVG L TRPDI+ AV AV+ F NPG H + V +I+ Y+ + + + G + YTD +G +D+RRS +G V + G+I W+ + Q + EA+Y+ALS ++++ + ++
Sbjct: 26 TFLCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCHPVSTPFESSERLDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRILRYLKGTINNRLLFNKRGNGEII-GYTDADWGGDVDSRRSTTGYVFMFQGGAISWNVKRQPTVALSSCEAEYMALSRTIQEALWWR 238
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A5S6QHL1_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QHL1_TRIMR) HSP 1 Score: 137 bits (344), Expect = 2.340e-33 Identity = 76/214 (35.51%), Postives = 123/214 (57.48%), Query Frame = 1
Query: 43 LGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVEKTSRIPA-MSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITY-----------GGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFK 648
+GD +YI I R+R+ + + + Q+ Y++ +++KF+++ + + LSK P TP+E +EM++ PY+ AVG LM T +RPDI+ V+ F ENPGPAH K V +I+ YI EL + Y G +S L ++A+ D+ + +D+RRS SG V++L G W +R+Q T EA+YVA+SE+ K++ F+
Sbjct: 430 VGDPSYYIGLEIHRDRRNKSIAIGQKAYIERILEKFNMQDCKPVACPWESSMKLSKEMSPTTPDESKEMSRIPYKAAVGSLMFLMTSSRPDISFETSKVSQFSENPGPAHWKAVKRILRYIKGTKELRLVYRSKSQSDKGQEGIKSESLQLKAFCDSDWAGDIDSRRSTSGYVLILCGGPDSWSTRVQRGIAQSTVEAEYVAISEATKEIKWFR 643
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A6A3L5P5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5P5_9STRA) HSP 1 Score: 132 bits (333), Expect = 7.890e-33 Identity = 81/219 (36.99%), Postives = 121/219 (55.25%), Query Frame = 1
Query: 25 RIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVE--KTSRIPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFKAGTRVYGAE 675
+ + +DLG A F + I + + R L + Q+ Y +S++ KF E K P G L+KGDEP+T E+ ++M PYR VG LM TRPDI+ AV ++ F ENPG H IK+V Y+L ++ I Y G G +EAY+D + D RRSVSG +++L + W S Q+ ++EA+Y+ALS+ VK+ + + + GAE
Sbjct: 132 KFRIKDLGRARFILGIEIDYDMERRTLGIIQKAYTESIIKKFGQENAKPCLAPLEPGV-QLTKGDEPQTEEDIDKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE 348
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.720e-32 Identity = 77/218 (35.32%), Postives = 120/218 (55.05%), Query Frame = 1
Query: 25 RIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVEKTSR-IPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFKAGTRVYGAE 675
+ + +D+G A F ++ I + + R L + Q+ Y +S++ KF E T + + L+K DEP+T E+ +M PYR VG LM TRPDI+ AV ++ F ENPG H IK+V Y+L ++ I Y G G +EAY+D + D RRSVSG +++L + W S Q+ ++EA+Y+ALS+ VK+ + + + GAE
Sbjct: 77 KFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE 293
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.000e-32 Identity = 79/219 (36.07%), Postives = 119/219 (54.34%), Query Frame = 1
Query: 25 RIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVE--KTSRIPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFKAGTRVYGAE 675
+ + +D+G A F + I + + R L + Q+ Y +S++ KF E K P G L+K DEP+T E+ +M PYR VG LM TRPDI+ AV ++ F ENPG H IK+V Y+L ++ I Y G G +EAY+D + D RRSVSG +++L + W S Q+ ++EA+Y+ALS+ VK+ + + + GAE
Sbjct: 69 KFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE 285
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 130 bits (327), Expect = 5.740e-32 Identity = 77/218 (35.32%), Postives = 118/218 (54.13%), Query Frame = 1
Query: 25 RIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVEKTSR-IPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFKAGTRVYGAE 675
+ + +DLG A F + I + + R L + Q+ Y +S++ KF E + + L+K DEP+T E+ +M PYR VG LM TRPDI+ AV ++ F ENPG H IK+V Y+L ++ I Y G G +EAY+D + D RRSVSG +++L + W S Q+ ++EA+Y+ALS+ VK+ + + + GAE
Sbjct: 132 KFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE 348
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A6A3HKX1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HKX1_9STRA) HSP 1 Score: 128 bits (321), Expect = 6.230e-32 Identity = 80/219 (36.53%), Postives = 118/219 (53.88%), Query Frame = 1
Query: 25 RIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVE--KTSRIPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFKAGTRVYGAE 675
+ + +DLG A F + I + + R L + Q+ Y +S++ KF E K P G L+K DEP+T E +M PYR VG LM TRPDI+ AV ++ F EN G H IK+V Y+L ++ I Y G G +EAY+D + D RRSVSG +++L S+ W S Q+ ++EA+Y+ALS+ VK+ + + + GAE
Sbjct: 21 KFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENSGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGASVVWRSTFQKTVTLSSTEAEYMALSDCVKECVWMRRLLKDIGAE 237
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 127 bits (320), Expect = 8.730e-32 Identity = 78/219 (35.62%), Postives = 118/219 (53.88%), Query Frame = 1
Query: 25 RIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVE--KTSRIPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDVMLFKAGTRVYGAE 675
+ + +D+G A F + I + + R L + + Y +S++ KF E K P G L+K DEP+T E+ +M PYR VG LM TRPDI+ AV ++ F ENPG H IK+V Y+L ++ I Y G G +EAY+D + D RRSVSG +++L + W S Q+ ++EA+Y+ALS+ VK+ + + + GAE
Sbjct: 21 KFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE 237
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Match: A0A2P4Y945_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y945_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.400e-31 Identity = 75/209 (35.89%), Postives = 121/209 (57.89%), Query Frame = 1
Query: 16 LGGRIKQEDLGDAEFYIACYITRNRKARELKLDQRMYVQSMVDKFDVE--KTSRIPAMSGAPALSKGDEPKTPEE*EEMTKFPYREAVGVLMRTTTMTRPDIACAVRAVAWFCENPGPAHEKVVIKIV*YILDMTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHSRMQEIPVSGTSEADYVALSESVKDV 636
+ G+ + +DLG A F I + + + L + QR Y +S+++KF E K S P + + L+K DEP++ ++ +M PYR VG LM TRPDIA AV ++ + ENPG H IK+V Y+L +++ITY G+ G + AY+D + D RRSVSG ++++ + W S+ Q+ ++EA+Y+ALS+ +K+V
Sbjct: 210 ISGQFRIKDLGRARFIFGIEINYDMERKALTISQRAYTESIINKFGQENAKPSLTP-LDPSVHLTKADEPQSDDDKAKMKSKPYRSLVGSLMYLACETRPDIAVAVAKLSRYLENPGQRHWDAGIKVVRYLLKTKDVAITYDGRM-GTELTAYSDADWTGNRDDRRSVSGVMLMMCGAPVVWRSKFQKTVALSSTEAEYMALSDCIKEV 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25244.6879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25244.6879.1 >prot_H-paniculata_contig25244.6879.1 ID=prot_H-paniculata_contig25244.6879.1|Name=mRNA_H-paniculata_contig25244.6879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp MTELSITYGGQSCGLWMEAYTDTGFGACLDARRSVSGGVVVLVKGSIRWHback to top mRNA from alignment at H-paniculata_contig25244:2764..3468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25244.6879.1 ID=mRNA_H-paniculata_contig25244.6879.1|Name=mRNA_H-paniculata_contig25244.6879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=705bp|location=Sequence derived from alignment at H-paniculata_contig25244:2764..3468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25244:2764..3468+ >mRNA_H-paniculata_contig25244.6879.1 ID=mRNA_H-paniculata_contig25244.6879.1|Name=mRNA_H-paniculata_contig25244.6879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig25244:2764..3468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |