mRNA_H-paniculata_contig25237.6877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25237.6877.1
Unique NamemRNA_H-paniculata_contig25237.6877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25237.6877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25237contigH-paniculata_contig25237:2488..3143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25237.6877.1prot_H-paniculata_contig25237.6877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25237 2503..3143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.918674-UTR-H-paniculata_contig25237:2487..25021622929743.918674-UTR-H-paniculata_contig25237:2487..2502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25237 2488..2502 +
1691480992.266901-UTR-H-paniculata_contig25237:2487..25021691480992.266901-UTR-H-paniculata_contig25237:2487..2502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25237 2488..2502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.949582-CDS-H-paniculata_contig25237:2502..26311622929743.949582-CDS-H-paniculata_contig25237:2502..2631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25237 2503..2631 +
1691480992.275951-CDS-H-paniculata_contig25237:2502..26311691480992.275951-CDS-H-paniculata_contig25237:2502..2631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25237 2503..2631 +
1622929743.967759-CDS-H-paniculata_contig25237:3014..31431622929743.967759-CDS-H-paniculata_contig25237:3014..3143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25237 3015..3143 +
1691480992.2838473-CDS-H-paniculata_contig25237:3014..31431691480992.2838473-CDS-H-paniculata_contig25237:3014..3143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25237 3015..3143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25237.6877.1

>prot_H-paniculata_contig25237.6877.1 ID=prot_H-paniculata_contig25237.6877.1|Name=mRNA_H-paniculata_contig25237.6877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
METALDRARKVEVFVASSDGAREEAARRAETTFLAAYKEEKFKAPSSPAN
EVLIRHGILPDRVPVDRAPAKIKAMVAAQVERQCAT
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mRNA from alignment at H-paniculata_contig25237:2488..3143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25237.6877.1 ID=mRNA_H-paniculata_contig25237.6877.1|Name=mRNA_H-paniculata_contig25237.6877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=656bp|location=Sequence derived from alignment at H-paniculata_contig25237:2488..3143+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGTAATCAAATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGA
GGTCTTCGTGGCTTCTTCTGATGGTGCGCGAGAAGAGGCTGCAAGGCGAG
CAGAAACGACTTTCTTGGCGGCTTACAAGGAGGAGAAATTCAAGGTCAGT
ACAGAATCGGAGAGTGTCCAATGTTTGGTGTGGTGTTGTGTGCGACAGTC
ATCAACATCTAAAAGTGAATGTGTTGCGCAAGCACTATCACTATTTGCAG
TACCAAACAGCTGAGCCAATTATGAAAAGTTTGTCAACGCCGATTGACAG
AGATGCCCTAGTAGTAGTGGCACCCGAAGAGAGCCACTCAAGGCTTGGAC
AATAGAACGTATTAGTAAACGGAAGCCGAATTGTTTAGTTGACATTGATG
CGTGTTGAGAAGCTGTTTTGTTCGCGCTGCCGTTTCTTGATGATGCAGAC
ACTTTTTATTATGTTGTGTATAATACGTACGTTAACTACTATGTAATATA
TTCCCCCATGCTCCCCTTGTGATACAGGCACCATCATCCCCGGCCAATGA
GGTTCTCATTCGCCATGGTATTCTACCGGATAGGGTCCCAGTTGATAGAG
CGCCTGCCAAAATTAAAGCAATGGTGGCAGCACAAGTGGAAAGGCAATGC
GCCACT
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Coding sequence (CDS) from alignment at H-paniculata_contig25237:2488..3143+

>mRNA_H-paniculata_contig25237.6877.1 ID=mRNA_H-paniculata_contig25237.6877.1|Name=mRNA_H-paniculata_contig25237.6877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig25237:2488..3143+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCGTGGCTTC
TTCTGATGGTGCGCGAGAAGAGGCTGCAAGGCGAGCAGAAACGACTTTCT
TGGCGGCTTACAAGGAGGAGAAATTCAAGATGGAGACGGCGCTTGATCGT
GCGAGGAAGGTTGAGGTCTTCGTGGCTTCTTCTGATGGTGCGCGAGAAGA
GGCTGCAAGGCGAGCAGAAACGACTTTCTTGGCGGCTTACAAGGAGGAGA
AATTCAAGGCACCATCATCCCCGGCCAATGAGGTTCTCATTCGCCATGGT
ATTCTACCGGATAGGGTCCCAGTTGATAGAGCGCCTGCCAAAATTAAAGC
AATGGTGGCAGCACAAGTGGAAAGGCAATGCGCCACTGCACCATCATCCC
CGGCCAATGAGGTTCTCATTCGCCATGGTATTCTACCGGATAGGGTCCCA
GTTGATAGAGCGCCTGCCAAAATTAAAGCAATGGTGGCAGCACAAGTGGA
AAGGCAATGCGCCACT
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