mRNA_H-paniculata_contig25218.6867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25218.6867.1
Unique NamemRNA_H-paniculata_contig25218.6867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25218.6867.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 6.230e-64
Identity = 99/154 (64.29%), Postives = 126/154 (81.82%), Query Frame = 2 
Query:    2 PLFISAMGLISGMEPWDQSNPGEDFRFSSSRSTIYVFGLVFVVLFIAWHFARAWLTLPGVYLISGGAEDAKPPGKNLHGIYMVSRVVIVVYCILFTSFLLAEDNGMDYRGALLAWTLSLLACFPHNVSNLWLALNTGIFLHGISSHRLAFLGCK 463
            P+ ISA+G I G+E WD+ N G+DF FS+ RSTI+VFGL+  VL +AWHFARAWLTLPG+ L+SGG +  +PP ++LHGIY  SR+VI+ +CILFTSF+++ED+G DYRGALLAW LSL+A FPH VS +WL +NTGIFL GI ++RL FLGCK
Sbjct:   89 PIIISALGRIGGLERWDKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVK-VEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGANRLRFLGCK 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25218.6867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF3_ECTSI6.230e-6464.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25218contigH-paniculata_contig25218:359..2459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_000830.1
Exons2
Model size1924
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25218.6867.1prot_H-paniculata_contig25218.6867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25218 378..1001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.7515972-UTR-H-paniculata_contig25218:358..3771622929742.7515972-UTR-H-paniculata_contig25218:358..377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25218 359..377 +
1691480991.7149034-UTR-H-paniculata_contig25218:358..3771691480991.7149034-UTR-H-paniculata_contig25218:358..377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25218 359..377 +
1622929742.855304-UTR-H-paniculata_contig25218:1001..24591622929742.855304-UTR-H-paniculata_contig25218:1001..2459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25218 1002..2459 +
1691480991.743955-UTR-H-paniculata_contig25218:1001..24591691480991.743955-UTR-H-paniculata_contig25218:1001..2459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25218 1002..2459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.8318198-CDS-H-paniculata_contig25218:377..5941622929742.8318198-CDS-H-paniculata_contig25218:377..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25218 378..594 +
1691480991.7263987-CDS-H-paniculata_contig25218:377..5941691480991.7263987-CDS-H-paniculata_contig25218:377..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25218 378..594 +
1622929742.8430147-CDS-H-paniculata_contig25218:771..10011622929742.8430147-CDS-H-paniculata_contig25218:771..1001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25218 772..1001 +
1691480991.734679-CDS-H-paniculata_contig25218:771..10011691480991.734679-CDS-H-paniculata_contig25218:771..1001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25218 772..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25218.6867.1

>prot_H-paniculata_contig25218.6867.1 ID=prot_H-paniculata_contig25218.6867.1|Name=mRNA_H-paniculata_contig25218.6867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MGLISGMEPWDQSNPGEDFRFSSSRSTIYVFGLVFVVLFIAWHFARAWLT
LPGVYLISGGAEDAKPPGKNLHGIYMVSRVVIVVYCILFTSFLLAEDNGM
DYRGALLAWTLSLLACFPHNVSNLWLALNTGIFLHGISSHRLAFLGCK*
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mRNA from alignment at H-paniculata_contig25218:359..2459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25218.6867.1 ID=mRNA_H-paniculata_contig25218.6867.1|Name=mRNA_H-paniculata_contig25218.6867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2101bp|location=Sequence derived from alignment at H-paniculata_contig25218:359..2459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTGTTTATCTCTGCCATGGGGCTCATTAGCGGCATGGAGCCATGGG
ATCAGTCAAACCCCGGGGAGGACTTCAGATTCTCGTCTAGCCGTTCGACC
ATTTACGTCTTCGGGCTGGTGTTTGTCGTTCTGTTCATCGCATGGCACTT
CGCCCGCGCATGGTTGACTCTTCCCGGAGTGTACCTCATCTCCGGTGGTG
CTGAGGACGCGAAGCCCCCTGGGAAGAACCTTCACGGTGAGTTCGGCGAA
AGTATTTCAGTTTCCCACATTATAGCTTGGATGAGGCGTCATGACACGGA
TATACCACGGGACTCAGCTCTCGGGGGCTTTTCGCAAGGAGGGTTGCAGG
TGAATTGGATGCCTGTGGTTCCGGACTGAAAATAGATCGTTTCGTTCCGT
CTTGTATCTGCAGGAATCTACATGGTCAGCCGTGTGGTGATTGTGGTGTA
CTGTATCTTGTTCACCTCGTTCCTCCTCGCTGAAGACAATGGAATGGACT
ACCGAGGTGCCCTCTTGGCGTGGACATTGTCGCTTCTGGCGTGCTTCCCC
CACAACGTTAGCAACCTGTGGCTCGCGCTCAACACGGGTATTTTCCTGCA
CGGAATCAGCTCGCACCGTCTCGCCTTCCTGGGATGCAAGTAATACTAGG
GTCAAGTCAGTGTTAATTCTCGTGTGTAATTACATCGCACGGTTGTTAAC
ACTAAGTCAGCCCGTGTTTCTCGCGAGTAGTCGATTTCGTCGCGCCCAGC
TTTTTTACGGCCTTGTGTCGAGGAGAAATGTTGCCTAAATGCGCGGAAGT
CATGTTTTTTATTTGGAGGTCGTGAGTAGCGGGTGTGCAACGTTCTTGAG
CGTGCGTGGCGGGGCTAGTGGTCATGGAGGTGGTGGTGTTGCTCGTTTCT
TGACAAGATGCAAATTGTACGGGTTGGAGACTAGGTTGGGTGCCACACAC
GGCGTCTCGTGTGTGACTTGACCGTGGGAGTGAGCTGCGAGGATAGGGTA
CAGTGTGGGTCAGCAAGAACTGTGGCGTCTTGATTTCTTCGCATTGGTCC
TTGTTTCCCGCACCCCCCGCCTTCGCCTTGTCCGGTGGCGGGGAAATGGC
GCGTATTAGACCTTGATGTTCTACGTAAGCCATTCCCGTTTAAAGTAGAT
CACATAATCATGCACGAGAGTGTGAACTACCTTGTTTTGCTTGATTGTTT
TTTGGTGTTGGTCTTTTCCTCCTTGTAGCTGTGTTTGCTTTCCGTTTGTG
ATACACAGCGCAGGAAGCGTGATTATTTCGGAGGGGAAATTGATCAGGTC
GTGTGGGATGGATATTTCTCTGGCAGAAATAGATTCTGTTGGAACATATC
TACATGAATGGTGTTATGGTGTGCTTTGTTGAGTCTTGTCCGATATCTTG
TCGGTTGTTCACTGTGTTGCATTTCCTGTGGAGGGCGGGGCGGTCGTGTT
CACCGTGTTGTATTTCCTGTCGAAGGCGGGGGCGGTCGGCACCTGCGTGG
TCCTTCATCGGTGTTACATGTTTGAACTTCCAGATGTAATACATTATTGC
AGTCTACATCGTGGTTGTTGAGCGTACGTATTGTGGGACTGTGGCAGTAC
GTCGTAAGTTATGACTCTCGAAAAGTCAAGTGTATAACATGATTTAGTTG
CGTCGACCAGCGAAAATTGTCTACGTAAACGCCAGTTGACGGTAGGGTTT
TCTTCTGGGTACTCTGGTGTGATTTGTACTCTGTGATTTGTGGTCCTGTG
AGTACCGCTGGTGTCTCTGAACAGTTGTAGGCGGTGTATTTATTTACGTG
GACAGTTGAAATATGTTGGCAGTTGGCGGTATATGTGCCGGTGGATGCAG
AGGTTTTTCAGCTCGCCTTTGTTGATGACAATGAAGGCTGTAGCGAATCG
TGGTCGACGGTCTCCCCAATAATAAATTTGCTCTTGTATTCGGATGGTCT
AGTTGGGTGTAGCTTGTTCAACTTCTGCCCATGGAAGAACTAGCTTCATA
AAAAATTCAACGGTGAAGGACAAGCACACAGTCAACTCATGCTTGCGAAA
TCATGCAGCAAAAGTAAAACCAGGCCTGACCATTTTTCAGCAAGTCGGAT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig25218:359..2459+

>mRNA_H-paniculata_contig25218.6867.1 ID=mRNA_H-paniculata_contig25218.6867.1|Name=mRNA_H-paniculata_contig25218.6867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig25218:359..2459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCTCATTAGCGGCATGGAGCCATGGGATCAGTCAAACCCCGGGGA
GGACTTCAGATTCTCGTCTAGCCGTTCGACCATTTACGTCTTCGGGCTGG
TGTTTGTCGTTCTGTTCATCGCATGGCACTTCGCCCGCGCATGGTTGACT
CTTCCCGGAGTGTACCTCATCTCCGGTGGTGCTGAGGACGCGAAGCCCCC
TGGGAAGAACCTTCACGATGGGGCTCATTAGCGGCATGGAGCCATGGGAT
CAGTCAAACCCCGGGGAGGACTTCAGATTCTCGTCTAGCCGTTCGACCAT
TTACGTCTTCGGGCTGGTGTTTGTCGTTCTGTTCATCGCATGGCACTTCG
CCCGCGCATGGTTGACTCTTCCCGGAGTGTACCTCATCTCCGGTGGTGCT
GAGGACGCGAAGCCCCCTGGGAAGAACCTTCACGGAATCTACATGGTCAG
CCGTGTGGTGATTGTGGTGTACTGTATCTTGTTCACCTCGTTCCTCCTCG
CTGAAGACAATGGAATGGACTACCGAGGTGCCCTCTTGGCGTGGACATTG
TCGCTTCTGGCGTGCTTCCCCCACAACGTTAGCAACCTGTGGCTCGCGCT
CAACACGGGTATTTTCCTGCACGGAATCAGCTCGCACCGTCTCGCCTTCC
TGGGATGCAAGTAAGAATCTACATGGTCAGCCGTGTGGTGATTGTGGTGT
ACTGTATCTTGTTCACCTCGTTCCTCCTCGCTGAAGACAATGGAATGGAC
TACCGAGGTGCCCTCTTGGCGTGGACATTGTCGCTTCTGGCGTGCTTCCC
CCACAACGTTAGCAACCTGTGGCTCGCGCTCAACACGGGTATTTTCCTGC
ACGGAATCAGCTCGCACCGTCTCGCCTTCCTGGGATGCAAGTAA
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