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Homology
BLAST of mRNA_H-paniculata_contig2519.6854.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.590e-19 Identity = 78/212 (36.79%), Postives = 103/212 (48.58%), Query Frame = 1
Query: 280 YRRNTEAMSSRPSSYGTGGEEEV---------EVTGSMPLSMSRSRSWSFPLEPHPPIPGSEHSVQ-----GRRGETMGGMAGKMGMEATHPPLSPCRQTSRGFAYSTDEASACLESEMILNCVGSPLKKTPGFWDMRRSSLDRLRRRRDKGLLPAGYGTGRWSNYSTAPVGPKPRR------DPSTAMGRSVSMDRVGNNQVVGGNPARPG 855
YRR T+ + S+P++ GGE V+ ++PL +S +S P G S Q R + + G+ T P +P S GFAYSTDE SA +ES MILN V SPLKKTP FW+ R LDRL RRR++GLLPAGYGTG + S+ + +P R DP + G +D + P R G
Sbjct: 1612 YRRLTDTLYSQPTTGNDGGEGTSVTPATSHCPSVSSTLPLELS----FSAVAAQGPVAMGRSRSDQLPKCSSRSSRRLQQSPHQPGVVGTRFPRAP----SGGFAYSTDEDSASMESRMILNYVESPLKKTPEFWEAPRPVLDRLNRRRERGLLPAGYGTGLLTGSSSGAMKVEPGRTRASTADPGSLYGSCGVVDGYDSGMQAAPRPLRAG 1815
BLAST of mRNA_H-paniculata_contig2519.6854.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 6.550e-14 Identity = 66/161 (40.99%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 280 YRRNTEAMSSRPSSYGTGGEEEVEVTGSM-----------------------PLSMSRSRSWSFPLEPHPPIPGSEHSVQGRRGETMGGMAGKMGMEATHPPLSPCRQTSRGFAYSTDEASACLESEMILNCVGSPLKKTPGFWDMRRSSLDRLRRRRDKG 693
YRR T+A+SS+PS+ G GG E VT + P++M RSRS P + S RR + +G +G T P +P S GFAYSTDE SA +ES MILN V SPLKKTP FW+ R LDRL RRR++G
Sbjct: 1604 YRRLTDALSSQPST-GNGGGEGTSVTPATSHCPSVSSTLPLELIFPAVAAQGPVAMGRSRSDQLP----------KRSSSSRRLQQSPHQSGAVG---TRFPRAP----SGGFAYSTDEDSASMESRMILNYVESPLKKTPEFWEAPRPVLDRLNRRRERG 1746
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 85.9 |
| Seed ortholog evalue | 6.1e-14 |
| Seed eggNOG ortholog | 2880.D7FU18 |
| KEGG ko | ko:K01530,ko:K14802 |
| KEGG TC | 3.A.3.8 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | phospholipid-translocating ATPase activity |
| EggNOG OGs | COG0474@1,KOG0206@2759 |
| EC | 3.6.3.1 |
| COG Functional cat. | P |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03009 |
| Exons | 3 |
| Model size | 1560 |
| Cds size | 1560 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2519.6854.1 >prot_H-paniculata_contig2519.6854.1 ID=prot_H-paniculata_contig2519.6854.1|Name=mRNA_H-paniculata_contig2519.6854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=520bp
GNGGDGEGREKPASFLLAAVPNFSGDIDFPDGGRAVQAQGSRGGDQEGPR VSLEDTHAVGMEVGREREKRGLGPGGEAGGGAVGSGHHTAADAYRRNTEA MSSRPSSYGTGGEEEVEVTGSMPLSMSRSRSWSFPLEPHPPIPGSEHSVQ GRRGETMGGMAGKMGMEATHPPLSPCRQTSRGFAYSTDEASACLESEMIL NCVGSPLKKTPGFWDMRRSSLDRLRRRRDKGLLPAGYGTGRWSNYSTAPV GPKPRRDPSTAMGRSVSMDRVGNNQVVGGNPARPGRRERVVRREGALVQS TASDELRRMQSDRAPMPSCANGGGGGGGFGAGPSRRAAVSWGSVFDECDI TNRPLLALSDGSTCSSAVGTGDCGTPAAILRAINNCPADVESRTTFTKST SERQAASDTIDESVGGIVSQQSHTRRASHPSRRRSRDDAGCAAGGIPPGE DDGVPRYGADAVMAPGAGQRSNGMGDDGPVLFAGLMSFDSALQRGGGESG GSRDVRAYNHGRIKSEGAGG back to topmRNA from alignment at H-paniculata_contig2519:14238..18050+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2519.6854.1 ID=mRNA_H-paniculata_contig2519.6854.1|Name=mRNA_H-paniculata_contig2519.6854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3813bp|location=Sequence derived from alignment at H-paniculata_contig2519:14238..18050+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGTAACGGTGGCGACGGAGAGGGGCGGGAAAAACCGGCGTCGTTTTTGCT
GGCCGCTGTGCCAAATTTTTCGGGAGATATCGATTTCCCGGATGGTGGAC
GCGCAGTGCAAGCGCAGGGTAGTCGAGGTGGGGACCAGGAGGGGCCACGG
GTTAGTTTGGAGGACACGCATGCGGTGGGGATGGAGGTTGGAAGGGAAAG
GGAGAAGCGAGGGCTGGGGCCAGGTGGGGAAGCCGGCGGGGGGGCAGTGG
GTAGCGGACACCATACCGCAGCGGATGCTTACCGTAGGAATACGGAGGCC
ATGTCGTCGCGGCCTAGTAGCTATGGAACGGGGGGCGAGGAGGAAGTCGA
GGTGACGGGCTCTATGCCGCTCTCGATGTCGCGCTCGAGGTCTTGGGTGA
GTTTCCGTTCTGAGAAGGGGGGATGCGAGGAGGAAAGCCGATGCTGCGTT
CACCGCTTCATATAGAGCAGTTGTGGGGGCTGAGTGAGTATTGGGAGTGT
TTTTCCCTTTTCGATGTCTTGGCGCATCCGTACTGTCTACCTTGGAGGAC
ATTTTTTGCACGCTTGAGAGACCATCACCAGCGTTTGAGAGGCTTCTATT
AGACGTGAAGGAAACGAAGGCCATGGAATAGCTGTGATTGTCTGAGCTCC
CCCGTCGTTTATGTCCGACGCTGCGCTTAGAGGGTGTGGACTCTGTACGT
ACGCCCCCCCTGATCTCTGCTATCATACATTGTCTCTGGCTGATCTTCCG
TCTGCCCTTGAGTGATCTAGCTTTGCTGGTGGGTTATACATACGTGAAGT
TTGAAGTCAGCTGCATAACCTTAATATGGATACAATGGAGTCATTGTGTG
AGCTTCAGAGCTATAATTCAACTGACTATGGCAGGGTTGACTTACGAATG
ATATTTTGACGGTGTCTGTCGCTCAGGTATTTTTTTTTCATATTTTACCT
ACAGTACACGGCGAGTGATACAGTGATACTCTCTTGAAAAGATTGCCGTA
GTCCATGTCGTGCATGGTCGAAGAGGTGCGTGAAGTCCTGGTACTTGTTC
ATGATGGGGTCAAAATTTGATGCATGGTGAACAGGACCTTGTCGGTCTAC
CAAGCAGCATACTACCCAAATATCCGTCAAGTTCAGTCGAAAATTATTTC
ACCTGCCGGGCATCCGCGGTTTGTTATGGATGAGCTGTAGCAGTGGTGAT
AGGGGTGTAAGAGTTTGTTCGTGTACAGCTCTCTCAGCAAAGTGTACTCC
AAGATCGCACAATGGGGTTAGCTACGCCCTAGGCTATGGGGTAGCACTCC
AAAACATGAGTACACTGTGTATACGGGGATTGCACGCAAACGTTTCTTTA
TCCCCTATTTGCTGTCCTGTGGGTCATTATATAATTCGATGGTTCCATAG
TTTTTCCCCAATTGCAGCTACGCAAATGTACGTGTTGGTACTAAGAACTA
TACATGAAGGGTAACGAGTAGTACATATTGGTCATGCGCGAAGAGAAGTT
TAACGTTAGCAGCACACATACACACACTTCAAGCTCGCCATCGATCTTTT
ACTGAGTCCCATGAAGACAATTTCCAAAGACATCGTTGCCCCCCCTTTCC
CCCCCTCCTCGCGCCCCACCCCACCCCCGCCCTTTTCCTCCCTCGCGTGC
ACCCCGCCTGTTACCAATGTTCTTGCCGTTCAAACAAAATTCTCCAAACA
ACAGTCGTTTCCCCTCGAGCCGCACCCGCCAATTCCCGGCTCGGAGCATT
CGGTGCAGGGCCGTCGTGGAGAAACCATGGGGGGTATGGCCGGGAAGATG
GGGATGGAAGCGACCCATCCCCCACTTAGCCCTTGTCGCCAGACGAGCCG
CGGTTTCGCGTACTCTACCGACGAGGCGTCGGCGTGTCTGGAGTCCGAGA
TGATCCTCAACTGCGTAGGGTCGCCGCTCAAGAAGACGCCGGGGTTTTGG
GACATGCGACGATCGAGTCTGGACCGTCTCAGGCGGCGACGGGATAAAGG
TATGTACAGCCTTCAAGGATACCCTCCGGTTGCGGGGCGTAGGCTAAGAA
ATAAAAGAGGGTGACACGAGGTGAAGAAAATCTTTACACCCTATGGCGAA
GGACGCGAACACACATGAGAGTAGGAACGTTCAAATCTCCGAGAGTTTGT
GTATCGTCAGCCAAATGACTCCGCCCGGGGCAGTGGTGCTACGACAGGAT
GGGGTAGACCGTGCACTAACTGTTGTTCCCCATACGCATGAGTGGAAGCA
ACTGAAGCACACTGCGGCAGCTGCATGTAAATAGCTCTGTGTTGCAGTAC
TGCCCGTTTACAGTTGTACATACTATATCAGTGCCCGGCCCTCGGAGAAA
ATGTTGCGCATTTGCTTAGATGGCATGACAATCCAAACACAACTTCGTTG
TGTGTGTGTACTGTGTGGTCGTGCCTGATGTTGACTGTTTGTCACAGCTG
CATGTTTGTACTTTGTGTCTGTACACTGTGTGTGCCCCGAGGTCAGCAAA
ACACGGCTGTTTTTTGTTGCAGCTGGATGTGCGTGCGCTCAGCACCCCCC
CCGTGCCAAAACGTTAATCTCTAGATCTAGTGGGCGGGGAAGGCTTCCCG
ATTCTCAAACGAAGTGTAAAAAGAAGAAGTCAGTACTAAAGCGCCGCATT
TACGATTTCTAACGTTTTATATTTTACATTATTTATTTTTCATTTTTCCA
CGGGGAAGGGGAAGGGGGGGGGGGACTTCGAGGCGGGTGTGGAATTGTTT
TCCGTGGGTACAGACCGTGTGGCTGTGTTGAGTGTCTGCATCGATGGTGT
TCCATACCTAGGCACGCACGGTAGTAGCACAACACCACTTTGTACACTGT
TAGGCGCGTCGATTTTGTTTGCTCTGATTGGAAAAAATGCCACACCTTAC
CGTTTCTTCCATATGCCTGCTTTTTGCGCCCCCCCCGATGACAGGACTCT
TGCCAGCAGGATACGGAACAGGGCGATGGTCGAACTATTCCACCGCCCCG
GTCGGTCCCAAGCCTCGTCGAGATCCAAGCACTGCCATGGGCCGGTCGGT
GAGCATGGACCGCGTCGGTAATAACCAGGTCGTCGGCGGAAACCCCGCTA
GGCCTGGCCGTCGGGAGCGTGTAGTACGCCGAGAAGGCGCCTTGGTGCAA
TCGACTGCTTCTGACGAGCTAAGACGAATGCAATCAGATCGAGCACCGAT
GCCATCGTGTGCGAATGGCGGCGGCGGTGGTGGTGGTTTCGGCGCAGGCC
CGAGCAGACGTGCTGCTGTTAGTTGGGGTAGCGTTTTCGACGAGTGCGAT
ATCACTAACCGTCCTTTGCTTGCTCTTTCGGACGGCAGCACCTGCAGCAG
CGCTGTTGGGACAGGCGATTGTGGTACACCCGCCGCGATACTAAGGGCGA
TCAATAATTGTCCTGCTGACGTGGAAAGTCGTACAACATTCACCAAGAGC
ACCTCGGAAAGACAAGCCGCTAGTGATACAATCGATGAGAGCGTCGGCGG
AATTGTGTCTCAGCAGTCGCACACCAGGAGGGCGTCGCATCCGTCTCGTA
GGCGGAGTCGTGACGACGCCGGGTGTGCCGCAGGTGGTATCCCTCCGGGT
GAGGACGATGGAGTCCCCAGATATGGTGCGGATGCCGTCATGGCACCCGG
AGCGGGACAGCGGAGCAATGGTATGGGTGACGACGGCCCCGTTTTGTTCG
CTGGTTTGATGAGTTTCGATAGCGCCTTACAACGAGGTGGTGGTGAAAGT
GGCGGCAGTCGTGATGTTCGTGCTTACAATCACGGGCGGATAAAGAGCGA
AGGAGCGGGTGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig2519:14238..18050+ >mRNA_H-paniculata_contig2519.6854.1 ID=mRNA_H-paniculata_contig2519.6854.1|Name=mRNA_H-paniculata_contig2519.6854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3120bp|location=Sequence derived from alignment at H-paniculata_contig2519:14238..18050+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGTAACGGTGGCGACGGAGAGGGGCGGGAAAAACCGGCGTCGTTTTTGCT GGCCGCTGTGCCAAATTTTTCGGGAGATATCGATTTCCCGGATGGTGGAC GCGCAGTGCAAGCGCAGGGTAGTCGAGGTGGGGACCAGGAGGGGCCACGG GTTAGTTTGGAGGACACGCATGCGGTGGGGATGGAGGTTGGAAGGGAAAG GGAGAAGCGAGGGCTGGGGCCAGGTGGGGAAGCCGGCGGGGGGGCAGTGG GTAGCGGACACCATACCGCAGCGGATGCTTACCGTAGGAATACGGAGGCC ATGTCGTCGCGGCCTAGTAGCTATGGAACGGGGGGCGAGGAGGAAGTCGA GGTGACGGGCTCTATGCCGCTCTCGATGTCGCGCTCGAGGTCTTGGGGTA ACGGTGGCGACGGAGAGGGGCGGGAAAAACCGGCGTCGTTTTTGCTGGCC GCTGTGCCAAATTTTTCGGGAGATATCGATTTCCCGGATGGTGGACGCGC AGTGCAAGCGCAGGGTAGTCGAGGTGGGGACCAGGAGGGGCCACGGGTTA GTTTGGAGGACACGCATGCGGTGGGGATGGAGGTTGGAAGGGAAAGGGAG AAGCGAGGGCTGGGGCCAGGTGGGGAAGCCGGCGGGGGGGCAGTGGGTAG CGGACACCATACCGCAGCGGATGCTTACCGTAGGAATACGGAGGCCATGT CGTCGCGGCCTAGTAGCTATGGAACGGGGGGCGAGGAGGAAGTCGAGGTG ACGGGCTCTATGCCGCTCTCGATGTCGCGCTCGAGGTCTTGGTCGTTTCC CCTCGAGCCGCACCCGCCAATTCCCGGCTCGGAGCATTCGGTGCAGGGCC GTCGTGGAGAAACCATGGGGGGTATGGCCGGGAAGATGGGGATGGAAGCG ACCCATCCCCCACTTAGCCCTTGTCGCCAGACGAGCCGCGGTTTCGCGTA CTCTACCGACGAGGCGTCGGCGTGTCTGGAGTCCGAGATGATCCTCAACT GCGTAGGGTCGCCGCTCAAGAAGACGCCGGGGTTTTGGGACATGCGACGA TCGAGTCTGGACCGTCTCAGGCGGCGACGGGATAAAGTCGTTTCCCCTCG AGCCGCACCCGCCAATTCCCGGCTCGGAGCATTCGGTGCAGGGCCGTCGT GGAGAAACCATGGGGGGTATGGCCGGGAAGATGGGGATGGAAGCGACCCA TCCCCCACTTAGCCCTTGTCGCCAGACGAGCCGCGGTTTCGCGTACTCTA CCGACGAGGCGTCGGCGTGTCTGGAGTCCGAGATGATCCTCAACTGCGTA GGGTCGCCGCTCAAGAAGACGCCGGGGTTTTGGGACATGCGACGATCGAG TCTGGACCGTCTCAGGCGGCGACGGGATAAAGGACTCTTGCCAGCAGGAT ACGGAACAGGGCGATGGTCGAACTATTCCACCGCCCCGGTCGGTCCCAAG CCTCGTCGAGATCCAAGCACTGCCATGGGCCGGTCGGTGAGCATGGACCG CGTCGGTAATAACCAGGTCGTCGGCGGAAACCCCGCTAGGCCTGGCCGTC GGGAGCGTGTAGTACGCCGAGAAGGCGCCTTGGTGCAATCGACTGCTTCT GACGAGCTAAGACGAATGCAATCAGATCGAGCACCGATGCCATCGTGTGC GAATGGCGGCGGCGGTGGTGGTGGTTTCGGCGCAGGCCCGAGCAGACGTG CTGCTGTTAGTTGGGGTAGCGTTTTCGACGAGTGCGATATCACTAACCGT CCTTTGCTTGCTCTTTCGGACGGCAGCACCTGCAGCAGCGCTGTTGGGAC AGGCGATTGTGGTACACCCGCCGCGATACTAAGGGCGATCAATAATTGTC CTGCTGACGTGGAAAGTCGTACAACATTCACCAAGAGCACCTCGGAAAGA CAAGCCGCTAGTGATACAATCGATGAGAGCGTCGGCGGAATTGTGTCTCA GCAGTCGCACACCAGGAGGGCGTCGCATCCGTCTCGTAGGCGGAGTCGTG ACGACGCCGGGTGTGCCGCAGGTGGTATCCCTCCGGGTGAGGACGATGGA GTCCCCAGATATGGTGCGGATGCCGTCATGGCACCCGGAGCGGGACAGCG GAGCAATGGTATGGGTGACGACGGCCCCGTTTTGTTCGCTGGTTTGATGA GTTTCGATAGCGCCTTACAACGAGGTGGTGGTGAAAGTGGCGGCAGTCGT GATGTTCGTGCTTACAATCACGGGCGGATAAAGAGCGAAGGAGCGGGTGG TGACTCTTGCCAGCAGGATACGGAACAGGGCGATGGTCGAACTATTCCAC CGCCCCGGTCGGTCCCAAGCCTCGTCGAGATCCAAGCACTGCCATGGGCC GGTCGGTGAGCATGGACCGCGTCGGTAATAACCAGGTCGTCGGCGGAAAC CCCGCTAGGCCTGGCCGTCGGGAGCGTGTAGTACGCCGAGAAGGCGCCTT GGTGCAATCGACTGCTTCTGACGAGCTAAGACGAATGCAATCAGATCGAG CACCGATGCCATCGTGTGCGAATGGCGGCGGCGGTGGTGGTGGTTTCGGC GCAGGCCCGAGCAGACGTGCTGCTGTTAGTTGGGGTAGCGTTTTCGACGA GTGCGATATCACTAACCGTCCTTTGCTTGCTCTTTCGGACGGCAGCACCT GCAGCAGCGCTGTTGGGACAGGCGATTGTGGTACACCCGCCGCGATACTA AGGGCGATCAATAATTGTCCTGCTGACGTGGAAAGTCGTACAACATTCAC CAAGAGCACCTCGGAAAGACAAGCCGCTAGTGATACAATCGATGAGAGCG TCGGCGGAATTGTGTCTCAGCAGTCGCACACCAGGAGGGCGTCGCATCCG TCTCGTAGGCGGAGTCGTGACGACGCCGGGTGTGCCGCAGGTGGTATCCC TCCGGGTGAGGACGATGGAGTCCCCAGATATGGTGCGGATGCCGTCATGG CACCCGGAGCGGGACAGCGGAGCAATGGTATGGGTGACGACGGCCCCGTT TTGTTCGCTGGTTTGATGAGTTTCGATAGCGCCTTACAACGAGGTGGTGG TGAAAGTGGCGGCAGTCGTGATGTTCGTGCTTACAATCACGGGCGGATAA AGAGCGAAGGAGCGGGTGGT back to top
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