mRNA_H-paniculata_contig25146.6843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25146.6843.1
Unique NamemRNA_H-paniculata_contig25146.6843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 3.070e-87
Identity = 157/224 (70.09%), Postives = 181/224 (80.80%), Query Frame = 1
Query:    1 KVDGADGKTAAQVIVDMATAPLAKA-AAASGGKKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
            +VDGADGK AAQV+VD+ATAPLAKA AAA GGKK  +R +LTRPLVLICNDQWTPALR IRA+AQVFVFR ++SP+RLVQRLKAICT+E+L VNTDALTRLAD SHLDVRSCL+TLQFVARRA+SG V NASAALLT VAEGIKDE+RDLF+ +  V             +G +G  A      D++DADV EEV+ FNDH +VL G+HE+FLGVRFNDPTL K
Sbjct:  428 EVDGADGKAAAQVLVDIATAPLAKATAAAGGGKKGKRRTSLTRPLVLICNDQWTPALRPIRAIAQVFVFRAKSSPARLVQRLKAICTSERLTVNTDALTRLADRSHLDVRSCLHTLQFVARRASSGSVTNASAALLTAVAEGIKDERRDLFEGVLWV-------------LGVRGSMA------DRKDADVFEEVQAFNDHSKVLAGVHENFLGVRFNDPTLSK 632          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A836CAX9_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.050e-37
Identity = 104/274 (37.96%), Postives = 141/274 (51.46%), Query Frame = 1
Query:    1 KVDGADGKTAAQVIVDMATAPLAKAAAASGGKKNSKRKA-------------------LTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRA--------ASGG--VRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGT--------------KRRLFVGDQGGHA---GGTCVTDKRDAD-------VLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
            ++DGA+ K A   I+ MA APL     A+G                            LTRPL+LICN+Q+ P LR++R  A VF FR RASP RL +RL+ IC AE +  +  +L  L +S+  DVR+CLNTLQFVA R         ASGG  V + S AL+  +  G+KDE+RD+FQV  +VFT  ++G                      D  G     GG    D +D D       V  ++E FNDH+RVL G+HE +L  +++DP+L
Sbjct:  604 EIDGAEDKAAIDAILAMAHAPLPPLRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXTHPLTRPLILICNNQYAPHLRALRPEAAVFSFR-RASPQRLARRLRVICAAEAITASQPSLLALCESTGNDVRACLNTLQFVAHRTRQAQRPLQASGGGRVHDVSMALVAALTTGMKDERRDIFQVWNAVFTAPKSGAGGXXXXXXXXXXXXXXXXXXXDAPGRTAGRGGAAALDLKDDDAPSGAAAVQRQLEQFNDHRRVLDGVHECYLQAKYSDPSL 876          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A7S3YLZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLZ4_HETAK)

HSP 1 Score: 132 bits (331), Expect = 7.500e-32
Identity = 89/234 (38.03%), Postives = 131/234 (55.98%), Query Frame = 1
Query:    1 KVDG-ADGKTAAQVIVDMATAPLAKAAAASGGK-KNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRN--ASAALLTVVAEGIKDEKRDLFQVLRSVF-------TRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
            +VDG A+G  A +V++D+A APL +A + SGGK K      LTRPL+LICND + P LR +R +A+VF F+   S  RL++RL+ I   EK+  + ++L  L  ++  D+RSCLNTLQFV     +  ++   +S AL   +  GIKD KR +F+V  S++       +R  A  K+     D      G     K   ++++ VE   +  +VL G HE    +R NDPTL K
Sbjct:   98 EVDGIAEGPAAMKVLLDIAQAPL-RAGSGSGGKGKKGGLPPLTRPLILICNDLYAPQLRKLRQIAKVFSFK-ETSEDRLMKRLRVILKQEKMDFSHESLRTLCQTTSNDIRSCLNTLQFVGLEIKNNKLKGMTSSGALFRAIENGIKDGKRSIFEVWNSMYISSGKNRSRPAALQKKMKLFSDPSSTTAGGSAKAKPAEEIMDLVERGGEAAKVLAGAHEHLPLLRHNDPTLVK 329          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: UPI001CC7ED50 (chromosome transmission fidelity protein 18 homolog n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC7ED50)

HSP 1 Score: 117 bits (294), Expect = 9.420e-27
Identity = 81/237 (34.18%), Postives = 124/237 (52.32%), Query Frame = 1
Query:    1 KVDGA--DGKTAAQVIVDMATA-----------PLAKAAAASGGKKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEE-VECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
            ++DGA  DGK A +VI+ M  A           P          KK  K  +L+RP++ ICND + PALR +R +A+V +F  + + SR+V RLK IC  E    ++ ALT LA+ +  D+RSCLNTLQF+ R+  +  V    + ++     G KD  R +F V R VF +++   +R+   G         C+    D D L   +    D+   +GG+HE+ L +R++DP + K
Sbjct:  418 EIDGALGDGKGAVEVILKMVAAEKKYEVGKGNLPQEDKPGKISSKKGRKMTSLSRPVICICNDLFAPALRPLRQVAKVHMF-VQPTVSRVVNRLKYICNKEGFRASSIALTALAEYTDCDIRSCLNTLQFLNRKKETLNVLELGSQVV-----GRKDMTRSVFDVWRGVFQKRKVKHERKSVNG---------CINTSSDFDSLHSLISNCGDYDLTMGGIHENILQLRYHDPRMQK 639          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: W5MES1_LEPOC (Chromosome transmission fidelity factor 18 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MES1_LEPOC)

HSP 1 Score: 117 bits (293), Expect = 1.240e-26
Identity = 82/234 (35.04%), Postives = 124/234 (52.99%), Query Frame = 1
Query:    4 VDGADGKTAAQVIVDMATAPL-------AKAAAASGGKKNSKRK--ALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFT-----RKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
            +D  DG  +A + V +AT          A+ A +S GK   K+K   L RP++ ICND + PALR +R  A +  F P   PSRLVQRL  I   + +  +T AL  L + +  D+RSC+NTLQF+  R    G R     ++  +  G+KD+ + LF V + +F      RKRAG +  L VG + G   G   + +R   +L       +H++V  GL+++FL ++  DP+L
Sbjct:  458 IDEIDGAPSAAINVLLATLNRKESREEEAEGAPSSLGKNKRKKKESVLLRPIICICNDLYVPALRQLRQQAFLLAF-PPTQPSRLVQRLTEISKRQGMKADTGALMALCEKTDNDIRSCINTLQFLHGR----GRRQLDQRMVQSMTIGLKDQNKGLFSVWQEIFQLPRVKRKRAGQE--LSVGLEEGSGPGNANSTQRLPHILHLASSAGEHEKVAQGLYDNFLNMKLKDPSL 684          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: UPI001C4E8F5D (chromosome transmission fidelity protein 18 homolog n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E8F5D)

HSP 1 Score: 115 bits (288), Expect = 5.980e-26
Identity = 82/237 (34.60%), Postives = 126/237 (53.16%), Query Frame = 1
Query:    1 KVDGA--DGKTAAQVIVDMATAP----LAKAAAAS-------GGKKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEE-VECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
            ++DGA  DGK A +VI+ M  A     + K   A          KK  K  +L+RP++ ICND + PALR +R +A+V +F  + + SR+V RLK IC  E    ++ ALT LA+ +  D+RSCLNTLQF+ ++  +  V    + ++     G KD  R +F V R VF +K     R+   G         C++   D D L   +    D++  +GG+HE+ L +R++DP + K
Sbjct:  419 EIDGALGDGKGAVEVILKMVAAEKKYEVGKGNLAQEEKPGKISSKKGRKTTSLSRPVICICNDLFAPALRPLRQVAKVHMF-VQPTVSRVVNRLKYICNKEGFRASSIALTALAEYTDCDIRSCLNTLQFLNKKKETLNVLELGSQVV-----GRKDMTRSVFDVWRGVFQKKNVKHGRKSVNG---------CISTASDFDSLHSLISNCGDYELTMGGIHENILQLRYHDPRMQK 640          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A5D2NZ50_GOSTO (AAA domain-containing protein n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2NZ50_GOSTO)

HSP 1 Score: 114 bits (285), Expect = 1.360e-25
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 1
Query:    1 KVDGA--DGKTAAQVIVDMATAPLAKAAAASGG--KKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEE-VECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
            ++DGA  DGK A +VI+ M +A             KK SK  +LTRP++ ICND + PALR +R +A+V +F  + + SR+V RLK IC  E +  ++ ALT LA+ +  D+RSCLNTLQF+ ++  +  V + S+ ++     G KD  +  F + R +F ++   TKR        G + G       + D L   +    D+  +L G+HE+ L +RF+DP + K
Sbjct:  379 EIDGALGDGKGAVEVILKMVSAEKKHDFGKENNAKKKGSKTASLTRPVICICNDLYAPALRPLRQIAKVHIF-VQPTVSRVVSRLKYICNREGMKTSSIALTALAEFTECDIRSCLNTLQFLQKKNETLNVMDISSQVV-----GRKDVSKSAFDIWREIFHKR---TKRDRKSNTSSGSSYG-------EFDFLHALISNRGDYDVILDGIHENILQLRFHDPVMHK 590          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A8C9ZID1_SANLU (Chromosome transmission fidelity factor 18 n=2 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9ZID1_SANLU)

HSP 1 Score: 114 bits (284), Expect = 1.850e-25
Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 1
Query:    4 VDGADGKTAAQVIVDMATAPLAKAAAASGG-----KKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
            +D  DG  AA + + +AT    +      G     KK  K   L RP++ ICND + PALR +R  A + VF P+  PSRL QRL  I   + +  +T  L  L + +  D+RSC+NTLQF+ RR    G +  S   +  ++ G KD+ + LF + + +F  +R   KR   +G++   A G+    +R   +L       ++++V  GL++++L +R  DP L
Sbjct:  204 IDEIDGAPAAAINILLATLNRKEGHGGDAGTETAKKKKKKESILLRPIICICNDLYVPALRPLRQQAFLLVF-PQTQPSRLAQRLAEISLQQGMKTDTGTLMSLCEKTDNDIRSCINTLQFLNRR----GHKQLSTKTIQCISVGQKDQNKGLFHLWQQIFQLQRTKRKR---IGEEFDEAPGSGGGAQRFQHILHLASSSGEYEKVSQGLYDNYLSMRVRDPNL 420          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A484DM09_PERFV (AAA domain-containing protein n=8 Tax=Percidae TaxID=8165 RepID=A0A484DM09_PERFV)

HSP 1 Score: 114 bits (284), Expect = 2.010e-25
Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 1
Query:    4 VDGADGKTAAQVIVDMATAPLAKAAAASGG-----KKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
            +D  DG  AA + + +AT    +      G     KK  K   L RP++ ICND + PALR +R  A + VF P+  PSRL QRL  I   + +  +T  L  L + +  D+RSC+NTLQF+ RR    G +  S   +  ++ G KD+ + LF + + +F  +R   KR   +G++   A G+    +R   +L       ++++V  GL++++L +R  DP L
Sbjct:  410 IDEIDGAPAAAINILLATLNRKEGHGGDAGTETAKKKKKKESILLRPIICICNDLYVPALRPLRQQAFLLVF-PQTQPSRLAQRLAEISLQQGMKTDTGTLISLCEKTDNDIRSCINTLQFLHRR----GHKQLSTKTIQCISVGQKDQNKGLFHLWQQIFQLQRTKRKR---IGEEFDEAPGSGGGAQRFQHILHLASSSGEYEKVSQGLYDNYLSMRVRDPNL 626          
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A7C9EUD3_OPUST (AAA domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EUD3_OPUST)

HSP 1 Score: 113 bits (283), Expect = 2.700e-25
Identity = 81/240 (33.75%), Postives = 131/240 (54.58%), Query Frame = 1
Query:    1 KVDGA--DGKTAAQVIVDMATAP----LAKAAAAS---GGKKNSKRKA----LTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRR----LFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
            ++DGA  +GK A +VI+ M  A       K  + S    GKK+SK ++    L+RP++ ICND + P+LR +R +A+V VF P+ + SR+V RLK IC  E L  N  ALT LA+ +  D+RSCLNTLQF+ ++  S  +   S+ ++     G KD  R +F + + +F +++     +    L   D       + ++++ D DV+ +            G+HE+FL + ++DP L K
Sbjct:  409 EIDGALGEGKGAVEVILKMVAAERNSYAVKETSTSEELSGKKSSKNRSKSMSLSRPVICICNDLYAPSLRPLRLVAKVHVF-PQPTVSRMVSRLKYICNKEGLKTNAIALTALAEFTECDIRSCLNTLQFLHKKKQSLDLAALSSQIV-----GQKDMTRSIFDIWKEIFQKRKVKQSAKHHLSLTTTDDASDLLYSLISNRGDCDVIHD------------GIHENFLQLHYHDPMLQK 630          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K262_9PHAE3.070e-8770.09AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CAX9_9STRA1.050e-3737.96AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3YLZ4_HETAK7.500e-3238.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001CC7ED509.420e-2734.18chromosome transmission fidelity protein 18 homolo... [more]
W5MES1_LEPOC1.240e-2635.04Chromosome transmission fidelity factor 18 n=2 Tax... [more]
UPI001C4E8F5D5.980e-2634.60chromosome transmission fidelity protein 18 homolo... [more]
A0A5D2NZ50_GOSTO1.360e-2535.53AAA domain-containing protein n=1 Tax=Gossypium to... [more]
A0A8C9ZID1_SANLU1.850e-2532.44Chromosome transmission fidelity factor 18 n=2 Tax... [more]
A0A484DM09_PERFV2.010e-2532.44AAA domain-containing protein n=8 Tax=Percidae Tax... [more]
A0A7C9EUD3_OPUST2.700e-2533.75AAA domain-containing protein n=1 Tax=Opuntia stre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25146contigH-paniculata_contig25146:399..3514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue4e-87
Seed eggNOG ortholog2880.D7FQ00
Preferred nameCHTF18
KEGG koko:K11269
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035753,GO:0035825,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045005,GO:0045935,GO:0046483,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051704,GO:0051716,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098813,GO:0140013,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:1903046,GO:1903047,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.ATP binding
EggNOG OGsKOG1969@1,KOG1969@2759
Ec32 ortholog descriptionsimilar to CTF18, chromosome transmission fidelity factor 18 homolog isoform 3
Ec32 orthologEc-01_008010.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size669
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25146.6843.1prot_H-paniculata_contig25146.6843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25146 399..3514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.645519-CDS-H-paniculata_contig25146:398..5301622929739.645519-CDS-H-paniculata_contig25146:398..530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 399..530 +
1691480990.5022361-CDS-H-paniculata_contig25146:398..5301691480990.5022361-CDS-H-paniculata_contig25146:398..530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 399..530 +
1622929739.657294-CDS-H-paniculata_contig25146:1572..16861622929739.657294-CDS-H-paniculata_contig25146:1572..1686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 1573..1686 +
1691480990.5152643-CDS-H-paniculata_contig25146:1572..16861691480990.5152643-CDS-H-paniculata_contig25146:1572..1686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 1573..1686 +
1622929739.672763-CDS-H-paniculata_contig25146:2044..22521622929739.672763-CDS-H-paniculata_contig25146:2044..2252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 2045..2252 +
1691480990.5252619-CDS-H-paniculata_contig25146:2044..22521691480990.5252619-CDS-H-paniculata_contig25146:2044..2252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 2045..2252 +
1622929739.683899-CDS-H-paniculata_contig25146:2591..26561622929739.683899-CDS-H-paniculata_contig25146:2591..2656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 2592..2656 +
1691480990.5430856-CDS-H-paniculata_contig25146:2591..26561691480990.5430856-CDS-H-paniculata_contig25146:2591..2656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 2592..2656 +
1622929739.6949284-CDS-H-paniculata_contig25146:3364..35141622929739.6949284-CDS-H-paniculata_contig25146:3364..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 3365..3514 +
1691480990.5557237-CDS-H-paniculata_contig25146:3364..35141691480990.5557237-CDS-H-paniculata_contig25146:3364..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25146 3365..3514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25146.6843.1

>prot_H-paniculata_contig25146.6843.1 ID=prot_H-paniculata_contig25146.6843.1|Name=mRNA_H-paniculata_contig25146.6843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
KVDGADGKTAAQVIVDMATAPLAKAAAASGGKKNSKRKALTRPLVLICND
QWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRL
ADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLF
QVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDH
QRVLGGLHESFLGVRFNDPTLCK
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mRNA from alignment at H-paniculata_contig25146:399..3514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25146.6843.1 ID=mRNA_H-paniculata_contig25146.6843.1|Name=mRNA_H-paniculata_contig25146.6843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3116bp|location=Sequence derived from alignment at H-paniculata_contig25146:399..3514+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGGATGGCGCCGACGGCAAGACGGCTGCGCAAGTAATCGTGGATAT GGCGACGGCACCCCTAGCCAAAGCAGCGGCTGCGTCTGGTGGAAAGAAAA ACTCGAAGCGAAAGGCACTCACCAGACCCTTGGTAAAGACTGTACGATAT ATTATTTTTTTTAGACTGTGTTGAATTTTGCGCTGGACATGATAGATTGC TCTTCTTGGGTGCGCCGTCGCGAAAGCTGATACTTCGGGGTTAGCACAAG TGCAATGGATGAATGAATGAATGCTGTGAAGTCAATTTTGACACGTGAAA ATGCGATCAACAACTGTATCATCATTTTTTATGCCCTCGTTGCACGGGGC TTTGACTTTGAACTGGTGGAGAAAATGTGGAGGTTATGATCGGCCTTGTT TTATTTCTGTTTTTTGCGGCCTCAGGCATGGTTCAACCTGCCATTGATTT GGTGCAATCAATGCCAAGATGTACGGCTGGTGTAGTCGAGCCATTGGCTA TCCGGCTGGAAATCGGAATGGCTCGGCTCGCTCCGCGACTTCAGTATTAT GTTAAAGCTGGAGGAACATTTCCACCTAAATAGTATTTGAAAGAATTCCC AAATGGTCATGGTGGTGAAAGCGGTGTGGTATTTTTTTCGTCAGTGTTGT GCATGGTAATTCAATGTTGTGTCAGTCTATTGTGTATCATTATCCAACGC TGGAGGAAAATTGTGTCTTGATTTATTATTTGACTTTGGCGTACGCTAGG AGAAAAAAGCTCTGTTGTTCTTCCTGCTCTTCCCAAACATAACAAGACAC CCCTATTTTTTTTTATTTATACCCCCCCCTGCGCGCGCGCGCCCTCCCTC CCGTCTTAAGTCTTAAGTCTTAAGTCTTCAAACAAGAGCGCAGCGAAAAA AAACGCTGTTGTTTGGTGGTATGGACGAATTCTGTTACGTTTTCGTTGAA CCATTTTTGTTGAAGAATAAATACTTACTTGAGCCAAAATGTGTCTGGGG GATGTTTGGGGAGCTGATTGTTAGGGGTTCCGGAAGGGACGGGGGACGTG GTATGTTGAGTTTTATTTACAACTCAATTTTTTTTTGTCTTCGCACGAGT GATGTCATGGTGAATGAATTTTATTGGTACGGTGTGCCTTCAATTTGAAT GCGATGACCGATGGTATCGTGCAGGTGTTGATCTGCAATGACCAGTGGAC TCCTGCCCTACGGTCGATCCGAGCGATGGCGCAGGTGTTTGTGTTCCGCC CCAGGGCGTCACCATCGCGTCTAGTGCAGCGCCTTAAGGTGGGTGGGTGG GTGGGTGGGTGGGTTGTTTTTACGTAGAATTGGGTTTGAAGGCTGATTTT GACACTTTTTCGCGGTGACGTGGTTATTGTCCAGCAGCTGAGAGAGGACG AGGGTCGTGCATGCAATGTTGTGCTTTTTTATTTTATTTTTCTTGTGCAA AGATTTGCGAACGTCAGTCGGTGTGATTTTCAGTCAAATCACTGTGCGTG TTTTTGTTCTATTAATATTACTAGCACAGAAGATTCAAATGCATATTTAC CTGCGTAAATAGCGGTCATCATTCACTCATTTACAAGACAAAGGACGACC CTTGTTTTCTAGTCGTTACATTACGTACGGTACTCTTGTTTCGCAGGCCA TCTGCACGGCGGAAAAGCTGTGCGTAAACACCGACGCGCTTACCCGGCTA GCGGACAGCTCGCACCTGGACGTGCGCTCTTGTCTGAACACGCTGCAGTT CGTGGCTCGACGAGCAGCCTCCGGGGGCGTGAGGAATGCGTCCGCGGCGC TGCTGACGGTCGTGGCGGAGGGCATAAAGGACGAGAAAAGAGATCTGTTT CAAGGTATATGATGTGGGGCGGGGGGGGGGGCGTGATCGGTCTATTATTT ACTAGTTAGACACGTACAGTAAGCATAACGTAATCCGTGTGCAGGGTAGG TGATCTACTTGAAGATGAGTGATGTATTCTAACCCGGCGTGAGGTTGCTT TACTTGAGGCGATATTTTTTCCCAGGTAGTTGCATCTCGTGCAAGTTCTT AGCTTGATGGCACTTTGCGCGCGCGCGCGCGGGGAAGGGTATACCTGTAA GCCTCTTGGTTGTTTTTTGTTAATTTGATATTTTTATGAGTTTTGCTGGG TCAACCGTTTCTCTCTTTTGCGTTCTTTTGTCGTGACCTGCAGTACTCCG ATCGGTGTTTACTCGAAAGAGAGCAGGAACCAAACGCCGCCTTTTTGTGG GAGACCAGGTGAGTTCAAAATAATTGTGAAAATATTGCTTGGGGTGGGAG GGGAGGAAGAAGGAAGAAAACGTGATAATAACCGTCGAACAAAATGGAGG TATTCTCAGCATCTTGCAAGCTGGATTACTTTTTTTATTTTTTCTTGTCC TTGAATGGAGAGGAGGAAACCTTTGCCCAACACTTACCCCGATATTCGGG TTCGTGTGTCAGTTGCCCGAAGGTCCGACTAGACAACCTTACGGCTGTCA TGTGGGGAAGGCACCCTGAGCGTTCGCCCGCCCTTTGCTCAGGGTAGTGT GGGACTCGCACCCACTAAAACCCCCTATGTTGTCCCCCTTCAACTTGGCG CAGTACACGCGTCGCCCTGCTCAGTAAGCTTCGGCCCTAGATTACTTGGT TATTATCCAGACACTGACCAAACTAGGGGGGGGGGGGAGTATCGGGCTTT GTTTGGATTTGAGACGTTGTTTTGCGATCATGGATAGTGACTGTAGATGA AGGATCATGACCTTATGTCAATGGAGAATGACTTGAAATTGCTTGCAAGC CATCCTTGGAATAAATACACTGTCTTGCCCGATTTTTATACGTATCGAAG TTTGCTTGTTCGTCTGAAATAATGTCCATCATTGGAACATGAACTTACGT TATAATATACATGACCATTATTTTTGTGTTCTGTGCGTGTTGTATGTGGA AAATGGGACACACAAGGGTGGCCACGCGGGCGGGACGTGCGTGACCGACA AACGCGACGCTGACGTGCTGGAGGAGGTGGAGTGCTTCAACGACCACCAG AGGGTGCTGGGAGGTCTGCATGAAAGTTTCCTCGGTGTTCGCTTCAACGA TCCTACCCTCTGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25146:399..3514+

>mRNA_H-paniculata_contig25146.6843.1 ID=mRNA_H-paniculata_contig25146.6843.1|Name=mRNA_H-paniculata_contig25146.6843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig25146:399..3514+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGGATGGCGCCGACGGCAAGACGGCTGCGCAAGTAATCGTGGATAT
GGCGACGGCACCCCTAGCCAAAGCAGCGGCTGCGTCTGGTGGAAAGAAAA
ACTCGAAGCGAAAGGCACTCACCAGACCCTTGAAGGTGGATGGCGCCGAC
GGCAAGACGGCTGCGCAAGTAATCGTGGATATGGCGACGGCACCCCTAGC
CAAAGCAGCGGCTGCGTCTGGTGGAAAGAAAAACTCGAAGCGAAAGGCAC
TCACCAGACCCTTGGTGTTGATCTGCAATGACCAGTGGACTCCTGCCCTA
CGGTCGATCCGAGCGATGGCGCAGGTGTTTGTGTTCCGCCCCAGGGCGTC
ACCATCGCGTCTAGTGCAGCGCCTTAAGGTGTTGATCTGCAATGACCAGT
GGACTCCTGCCCTACGGTCGATCCGAGCGATGGCGCAGGTGTTTGTGTTC
CGCCCCAGGGCGTCACCATCGCGTCTAGTGCAGCGCCTTAAGGCCATCTG
CACGGCGGAAAAGCTGTGCGTAAACACCGACGCGCTTACCCGGCTAGCGG
ACAGCTCGCACCTGGACGTGCGCTCTTGTCTGAACACGCTGCAGTTCGTG
GCTCGACGAGCAGCCTCCGGGGGCGTGAGGAATGCGTCCGCGGCGCTGCT
GACGGTCGTGGCGGAGGGCATAAAGGACGAGAAAAGAGATCTGTTTCAAG
GCCATCTGCACGGCGGAAAAGCTGTGCGTAAACACCGACGCGCTTACCCG
GCTAGCGGACAGCTCGCACCTGGACGTGCGCTCTTGTCTGAACACGCTGC
AGTTCGTGGCTCGACGAGCAGCCTCCGGGGGCGTGAGGAATGCGTCCGCG
GCGCTGCTGACGGTCGTGGCGGAGGGCATAAAGGACGAGAAAAGAGATCT
GTTTCAAGTACTCCGATCGGTGTTTACTCGAAAGAGAGCAGGAACCAAAC
GCCGCCTTTTTGTGGGAGACCAGTACTCCGATCGGTGTTTACTCGAAAGA
GAGCAGGAACCAAACGCCGCCTTTTTGTGGGAGACCAGGGTGGCCACGCG
GGCGGGACGTGCGTGACCGACAAACGCGACGCTGACGTGCTGGAGGAGGT
GGAGTGCTTCAACGACCACCAGAGGGTGCTGGGAGGTCTGCATGAAAGTT
TCCTCGGTGTTCGCTTCAACGATCCTACCCTCTGCAAGGGTGGCCACGCG
GGCGGGACGTGCGTGACCGACAAACGCGACGCTGACGTGCTGGAGGAGGT
GGAGTGCTTCAACGACCACCAGAGGGTGCTGGGAGGTCTGCATGAAAGTT
TCCTCGGTGTTCGCTTCAACGATCCTACCCTCTGCAAG
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