mRNA_H-paniculata_contig25108.6833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25108.6833.1
Unique NamemRNA_H-paniculata_contig25108.6833.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25108.6833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25108contigH-paniculata_contig25108:1004..2535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size252
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25108.6833.1prot_H-paniculata_contig25108.6833.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25108 1031..2502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.2252142-UTR-H-paniculata_contig25108:1003..10301622929738.2252142-UTR-H-paniculata_contig25108:1003..1030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25108 1004..1030 -
1691480989.880137-UTR-H-paniculata_contig25108:1003..10301691480989.880137-UTR-H-paniculata_contig25108:1003..1030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25108 1004..1030 -
1622929738.276235-UTR-H-paniculata_contig25108:2502..25351622929738.276235-UTR-H-paniculata_contig25108:2502..2535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25108 2503..2535 -
1691480989.9134965-UTR-H-paniculata_contig25108:2502..25351691480989.9134965-UTR-H-paniculata_contig25108:2502..2535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25108 2503..2535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.2408879-CDS-H-paniculata_contig25108:1030..10371622929738.2408879-CDS-H-paniculata_contig25108:1030..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25108 1031..1037 -
1691480989.8881657-CDS-H-paniculata_contig25108:1030..10371691480989.8881657-CDS-H-paniculata_contig25108:1030..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25108 1031..1037 -
1622929738.2518835-CDS-H-paniculata_contig25108:1464..16161622929738.2518835-CDS-H-paniculata_contig25108:1464..1616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25108 1465..1616 -
1691480989.8957005-CDS-H-paniculata_contig25108:1464..16161691480989.8957005-CDS-H-paniculata_contig25108:1464..1616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25108 1465..1616 -
1622929738.2627063-CDS-H-paniculata_contig25108:2469..25021622929738.2627063-CDS-H-paniculata_contig25108:2469..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25108 2470..2502 -
1691480989.9033113-CDS-H-paniculata_contig25108:2469..25021691480989.9033113-CDS-H-paniculata_contig25108:2469..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25108 2470..2502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25108.6833.1

>prot_H-paniculata_contig25108.6833.1 ID=prot_H-paniculata_contig25108.6833.1|Name=mRNA_H-paniculata_contig25108.6833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MLGATGNTAKLFVHKSRSKPQANSWSTWSSCPNCGDGASVSAHRLDSPAK
ALTSGCGQSKFMM*
back to top

mRNA from alignment at H-paniculata_contig25108:1004..2535-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25108.6833.1 ID=mRNA_H-paniculata_contig25108.6833.1|Name=mRNA_H-paniculata_contig25108.6833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1532bp|location=Sequence derived from alignment at H-paniculata_contig25108:1004..2535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGACAAGTGCTCGCTGGGCGAATCTGCACCATGCTCGGTGCGACAGG
AAATACGGCGAAGCTGGTGAGAGAGCAAAAGAGTAAGCGGCTAAAGTGGT
GGGCGGGGGTCGTACATGCCGCCTGACGACTGAAACGCACCATGGTTTGG
AAATGAAGCAAGTAAAGTTTACTGCATGTCGTAGCTGATATTACATGCGT
GTGTATGTAAATGCATAGGGAGCCAGCGCGTGTACGGGCATATCAATAGG
TGGTACAGATACAGCTGTAGATACATGCAATACCACACACGGCTAGGTTA
GGTTAGGTTAGGTTATAGCATAGTGAATGACATGAGCGCGCGAGTTCTGT
ATTTGGTATTTGATTTCTCCGTGTGTGCACCGTATAGACTGGCTGGCTCA
TGCGGCCGAGATGTGCATGACTTCATCGTTGGTCGTATGGTAATACGCTC
TGGTTTACCTATCTTTCGATCTCGCTCCTAGCAATAGTAGAGTACAGTAG
TGCATTTTGAACGGAGCAGTCGTCTTCTTCCCTGTAGGGAAGGATGCGTC
GTTTTATCATTTTTCGATTTTGTGTTTCTATTGTCCTGGTGGGAGTATTG
TTATTGTGACTGAGCTGGCTTGCTCGTTGGAGGCTGGATGAGGAGGCTCA
TTCTCGAATGGCTGATAGGCCGACCGAAAAAGATATGACGAAACGGTTGG
GGCGAGTGACTGACTGACTGACTGCCTGGCTGCCTGGCTGCCTGGCTGCC
CAAGTAAACTTGAGTTGTGTGACTTTTATTGCTGAGGTGCTACAGGAAGA
GCTCGACTTACCTGTGGTACGGATATCCATCCCAACATGCGAACTCTCGA
GACTGACCTCTGAACCCTGACCCCATCGATGCTCTTCTCCCACGGACATC
GTCCACGACGAAAAAATAGTTTGTACATAAATCACGCAGCAAGCCGCAAG
CAAACTCATGGAGTACGTGGAGTTCGTGCCCGAATTGTGGGGACGGGGCA
AGTGTCTCAGCACACCGGTTGGATTCACCTGCGAAAGCATTAACGTCAGG
ATGCGGACAGTCCAAGTTTATGTGAGATTGATGCCGGGGCGCATCAGAGT
GCTGTGCTGTGCTGTGCTGTACATGATACGGCAGCGTGTGGTCGATTGAT
TGCATACATGTAAATGTCTAAGTGTAGGCCTTCAATATTGTAGATTGACT
GCGGCAAGACCTAATGCGGAAGATCACGCGCCCATGTCGTCGTCGTCAAA
CCTCCTACTCAGCACTACAGTACAGTATCATAGTTTGTGTGAGTGTACAT
GTGTATTGTGCACTGCATGCAGGCACACACATAACGAGGAAGCTCATGGA
GCACAGTGCTCACGACTCGCATAGCGCTGCAGTTCTCCAGGTGTTCGCAA
TGGAAGCGTCCAATTATCCGCCTTCGCTTGTCGCTATATCTAACATAACC
ATGTTAACACCTTGCCAACGATAATGATAACGACAACGACAATGGCAGGA
TGTGATTGCGGCTCCAGAAGGCAGTGCTGTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25108:1004..2535-

>mRNA_H-paniculata_contig25108.6833.1 ID=mRNA_H-paniculata_contig25108.6833.1|Name=mRNA_H-paniculata_contig25108.6833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig25108:1004..2535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGGTGCGACAGGAAATACGGCGAAGCTGATGCTCGGTGCGACAGG
AAATACGGCGAAGCTGTTTGTACATAAATCACGCAGCAAGCCGCAAGCAA
ACTCATGGAGTACGTGGAGTTCGTGCCCGAATTGTGGGGACGGGGCAAGT
GTCTCAGCACACCGGTTGGATTCACCTGCGAAAGCATTAACGTCAGGATG
CGGACAGTCCAAGTTTATTTTGTACATAAATCACGCAGCAAGCCGCAAGC
AAACTCATGGAGTACGTGGAGTTCGTGCCCGAATTGTGGGGACGGGGCAA
GTGTCTCAGCACACCGGTTGGATTCACCTGCGAAAGCATTAACGTCAGGA
TGCGGACAGTCCAAGTTTATGATGTGAGATGTGA
back to top