mRNA_H-paniculata_contig2510.6830.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2510.6830.1
Unique NamemRNA_H-paniculata_contig2510.6830.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2510.6830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2510contigH-paniculata_contig2510:10273..12508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2510.6830.1prot_H-paniculata_contig2510.6830.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2510 10273..12506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.9653933-CDS-H-paniculata_contig2510:10272..105731622929737.9653933-CDS-H-paniculata_contig2510:10272..10573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2510 10273..10573 -
1691480989.7969105-CDS-H-paniculata_contig2510:10272..105731691480989.7969105-CDS-H-paniculata_contig2510:10272..10573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2510 10273..10573 -
1622929737.9810815-CDS-H-paniculata_contig2510:12327..125061622929737.9810815-CDS-H-paniculata_contig2510:12327..12506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2510 12328..12506 -
1691480989.8068345-CDS-H-paniculata_contig2510:12327..125061691480989.8068345-CDS-H-paniculata_contig2510:12327..12506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2510 12328..12506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.998605-UTR-H-paniculata_contig2510:12506..125081622929737.998605-UTR-H-paniculata_contig2510:12506..12508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2510 12507..12508 -
1691480989.815847-UTR-H-paniculata_contig2510:12506..125081691480989.815847-UTR-H-paniculata_contig2510:12506..12508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2510 12507..12508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2510.6830.1

>prot_H-paniculata_contig2510.6830.1 ID=prot_H-paniculata_contig2510.6830.1|Name=mRNA_H-paniculata_contig2510.6830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MLSPPSIPGPDVMDMGMSEIKCGRNEPCPSRVDASGSGCRGDGDGLARAQ
LGEQASEMHRVDLCDPAWSLNPVLTPMPLLSNSGEANEGGQEVNRGRGRG
NSQGRLVAVAAVNPEAQAAPASNTALVGESPLSSSLRAKQIARVRQADTA
GDAPSPPKGA
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mRNA from alignment at H-paniculata_contig2510:10273..12508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2510.6830.1 ID=mRNA_H-paniculata_contig2510.6830.1|Name=mRNA_H-paniculata_contig2510.6830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2236bp|location=Sequence derived from alignment at H-paniculata_contig2510:10273..12508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGTTGTCGCCTCCTAGTATCCCCGGTCCTGATGTTATGGACATGGGT
ATGTCCGAGATCAAATGTGGTCGGAATGAGCCGTGTCCATCTCGTGTTGA
TGCCAGTGGGTCCGGTTGTCGCGGAGATGGCGATGGGTTGGCTCGGGCAC
AGTTAGGGGAGCAGGCTTCCGAGATGCACCGGTGAGACCGCAGAGGGAAG
GGGGTATGTAGTGGGAGAGATGTATGTCCTGACCCGACCAAGCTCTGTTT
AACTTTCCCTTCCGTGTTTATTCTCGGCCGAAAACCTATGTTTGGTTTGA
TCTCTTTCCGCGTGCCCCAATGTGTGTAGTTTGGTAGTGTCGCTGTTGCG
AGTTCGCTTTCCTCAAAGCTGTGTCATTGTCTAGACGACTATGCCCCTTG
TCCCGACGAAGCCGCCGTCATGGCGCAGCTTGAAAATTGTGAACGGTCTT
GCTCTTTGTATGTTGTAGCCTGCTGCAGCCAGCCTTGGGTAGGCCAGCCA
CTGGTTGCATTTTTTTGTAAAATATCAGCAAAAAATATCATCTCGCTTGT
GGAATCTGAGGTTCAAATACGCACGCATGCCGTTCCCAAGAGTGTGCTTG
CTCACTTTGGCCGGTTCCCCCTCCTCGATCCGTATCAACCTCCCTCTCCC
CCTCCCCCCTCTCATTTAAGTCAGTTTGTGGATAATAACCAAGAGGCTAG
CAGCTTGAAGATGCTTAGCAATCTCCATTTTGTCTCACGGTTATTGGTTA
TTGTCATGTTTTCTACAGTTTTCTAGTCATTTATTTATGTGCTCCTACTC
TTGTACTCGTTTTTCAACTCCCATATGGTACTGTTTCAAACCATATTCTC
ATCGTGTAGATGCCGTTCCGTCGGTGAAGCTATCCTTGGTAGTTTTCGCG
TGTGGGGATGTCGCGCTGCAATAGTTGGCGGTAAAGTTCTTGATCCTGAT
TGAAATGCATTACCGATTGTCTTGTAACTGCGGTGTGTCAGTCCTATCAC
GTATCATATATGTAGATTTTTATTAATCTTGAATATCTACGCAGACCAAA
ATCAATCGGAGTCATTTGTTTACCTTCATACAATAGCAGCATCTTCGACA
GCGTGGTCTGAGCGGTGAGACAACAAGCACTTGTTCGTTTGTCGCACTTC
TGGCAAAGCAGACAGCAATCTTTGACACTAGCGACGGCGTGCAGACTAGC
TGCCAATTGTACACTTATGATTTTGTCTGCCATTGTGGAGTGATACACAC
AAACGTGTCCACGTTTATCCTCCTATCTTGATCTTGTGCTAGTCATCTTG
TTTAGCATCTTACGTAAATGTTCCCTCCCACCTGTTGAATACGTCGGGAA
GAACATGAAAGAGTAGCTGTTATTGTTTGTCTATTTGCAGTCAATGGTTT
GGCCCTGAGGCATTAATCGTGCTCCATCAGGTATTTTTTTGTAGCCGTCA
CTTGTTCGTTTTGCTCACTTCTTATTTATAATCAAATATTTTCGTTTTTA
TCTTTCGATGCATAATTATCGGTGTTTTTGGCACTAAAAACTATGGTATA
TCTGATATTCTATGGTTTGTATTTCATGTAGATGTGATGTCCTAATGATC
ACACAGCTGTGTGCTTCAAACACAGCAAATGAGGTTCAATATTGATATTC
ATTATTCCTCTTGGGCCTATTAATCGTATTTTCAGTTAGGCATGTCGAGC
GCGTCGTATTTTGATCAATATTTCCGTGTCTGAGGAGGTTAGGACAGACT
TTCGCAGGTGCTCGCCAATGTTCCAAACTTAAAGGATGGTGTCGATACTT
GGAGAGATGTGACTAAATTCCTCTAATAAAAGGATATTTCCCATCCATTT
TTTCATAGGAAATTCTCTACTTCCACGTTGTACCTTAAAAAACAGCTGAT
CCAACCCCCCCCCTCCCTACACTACCGAAAACCAGGGTCGACTTGTGCGA
TCCCGCTTGGTCCCTTAATCCTGTCCTCACGCCGATGCCACTGTTGAGCA
ACAGCGGCGAAGCTAACGAGGGCGGTCAGGAGGTGAACCGCGGTCGCGGA
AGGGGTAACAGCCAAGGGCGTCTGGTCGCCGTAGCGGCCGTCAACCCGGA
GGCTCAGGCCGCACCCGCGTCCAACACCGCGTTAGTTGGTGAATCGCCGT
TGTCGTCGTCGTTGAGAGCGAAACAAATCGCGCGCGTCCGTCAGGCGGAT
ACCGCCGGTGATGCACCATCCCCACCGAAGGGTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2510:10273..12508-

>mRNA_H-paniculata_contig2510.6830.1 ID=mRNA_H-paniculata_contig2510.6830.1|Name=mRNA_H-paniculata_contig2510.6830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig2510:10273..12508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTCGCCTCCTAGTATCCCCGGTCCTGATGTTATGGACATGGGTAT
GTCCGAGATCAAATGTGGTCGGAATGAGCCGTGTCCATCTCGTGTTGATG
CCAGTGGGTCCGGTTGTCGCGGAGATGGCGATGGGTTGGCTCGGGCACAG
TTAGGGGAGCAGGCTTCCGAGATGCACCGATGTTGTCGCCTCCTAGTATC
CCCGGTCCTGATGTTATGGACATGGGTATGTCCGAGATCAAATGTGGTCG
GAATGAGCCGTGTCCATCTCGTGTTGATGCCAGTGGGTCCGGTTGTCGCG
GAGATGGCGATGGGTTGGCTCGGGCACAGTTAGGGGAGCAGGCTTCCGAG
ATGCACCGGGTCGACTTGTGCGATCCCGCTTGGTCCCTTAATCCTGTCCT
CACGCCGATGCCACTGTTGAGCAACAGCGGCGAAGCTAACGAGGGCGGTC
AGGAGGTGAACCGCGGTCGCGGAAGGGGTAACAGCCAAGGGCGTCTGGTC
GCCGTAGCGGCCGTCAACCCGGAGGCTCAGGCCGCACCCGCGTCCAACAC
CGCGTTAGTTGGTGAATCGCCGTTGTCGTCGTCGTTGAGAGCGAAACAAA
TCGCGCGCGTCCGTCAGGCGGATACCGCCGGTGATGCACCATCCCCACCG
AAGGGTGCCGGTCGACTTGTGCGATCCCGCTTGGTCCCTTAATCCTGTCC
TCACGCCGATGCCACTGTTGAGCAACAGCGGCGAAGCTAACGAGGGCGGT
CAGGAGGTGAACCGCGGTCGCGGAAGGGGTAACAGCCAAGGGCGTCTGGT
CGCCGTAGCGGCCGTCAACCCGGAGGCTCAGGCCGCACCCGCGTCCAACA
CCGCGTTAGTTGGTGAATCGCCGTTGTCGTCGTCGTTGAGAGCGAAACAA
ATCGCGCGCGTCCGTCAGGCGGATACCGCCGGTGATGCACCATCCCCACC
GAAGGGTGCC
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