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Homology
BLAST of mRNA_H-paniculata_contig251.6828.1 vs. uniprot
Match: D7FJI6_ECTSI (MORN repeat variant family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI6_ECTSI) HSP 1 Score: 144 bits (364), Expect = 3.380e-37 Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 1
Query: 7 RAARGAIPPPIETRVLPVFVDDREPHGSSGAMSAADRLMSPAAAKGSKI--APSPMRKRTAAAASAMGNEGELARAELRMPRWLWDTVFQYPMAAGDTRTQYSDGSTFVGPLKDGMRHGKGAYFFE 378
R R IPP ETR +P D+ E ++ ++ A DRLMSPA KG +I +PSPMRKRTAAA SA+G+E AR + MP WLWDTVFQYP++ GDTRTQYSDGSTFVGPLKDGMRHGKG YFF+
Sbjct: 466 RTGRELIPPLSETRAMPGLSDEAELVSAARSI-ATDRLMSPAV-KGGRIISSPSPMRKRTAAADSAVGSETRGARGDSSMPGWLWDTVFQYPLSEGDTRTQYSDGSTFVGPLKDGMRHGKGCYFFQ 589
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 147.1 |
| Seed ortholog evalue | 6.5e-33 |
| Seed eggNOG ortholog | 2880.D7FJI6 |
| KEGG ko | ko:K03283,ko:K20178 |
| KEGG TC | 1.A.33.1 |
| KEGG Pathway | ko03040,ko04010,ko04138,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04138,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169 |
| KEGG Module | M00353,M00355 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | regulation of ryanodine-sensitive calcium-release channel activity |
| EggNOG OGs | COG4642@1,KOG0231@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516 |
| Exons | 4 |
| Model size | 459 |
| Cds size | 456 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig251.6828.1 >prot_H-paniculata_contig251.6828.1 ID=prot_H-paniculata_contig251.6828.1|Name=mRNA_H-paniculata_contig251.6828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
PARAARGAIPPPIETRVLPVFVDDREPHGSSGAMSAADRLMSPAAAKGSK
IAPSPMRKRTAAAASAMGNEGELARAELRMPRWLWDTVFQYPMAAGDTRT
QYSDGSTFVGPLKDGMRHGKGAYFFEDGSRYEGGFREDKRHGAGTLILAG
GG back to topmRNA from alignment at H-paniculata_contig251:34938..40114+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig251.6828.1 ID=mRNA_H-paniculata_contig251.6828.1|Name=mRNA_H-paniculata_contig251.6828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5177bp|location=Sequence derived from alignment at H-paniculata_contig251:34938..40114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCGCGAGCAGCGCGAGGAGCGATCCCTCCGCCTATTGAAACCCGTGT
TTTGCCTGTGTTCGTGGATGACCGAGAGCCGCATGGCAGGTGTGTTGGTG
GTGGTCGTCGTGTATGAGGAGCGTGTATGGTCATGCTCCAAGTTGTCATA
TTCCAGGGGTATGTATATCCCGTCACGTTTGACAATAGCACCCAGGGTGA
TGGGCGTCTTTGACACACCATTCTCTCTTCAGGTAGCTAAAGACCCTGCG
CTTTCTGGAAGAGCTAGCCTATCAAATGACAGATGTAGAGGAGTGAGGAG
ATGGTTTTTTGTCACTTTCCAACTAGATGATGGTCGGGTCGATATCAACG
GCTATATTACTAGTGCTAGTGATGTAGGGCTAAGTTTGGAAAAAGATCAC
GTTTGGATCATTTTCTTCCCACGGAGGCGAGATCTGAATACACCGGGACC
TTCGGTATACTTTTAAAAATTCAGTTTACACTAGAAACATGTATTCTTAT
GAATCGCTGTGTAATGGCGAGTAGTGTCATGAAACGCGCACGTACAGCAC
ACTGTACACCCGTTTGCTGGCTTTCATGAACTGAGGTTTAATCACAAACA
GAGCGACGAGAGGTCTCGTCATGTCTAGGTGTGACATGACCCTTGTGCAA
AAGAGGGGTCGCCCCTACCGTAGGACAAGGGTACCCCTATCGTAAGAAGA
GGGTACCTACCCCCTATAGCTCGATGAAATTCGAGTGTACAGAGATTAAC
GCCTCTTTTAACGGACGCGGCGACTACTTGTACCGTTGAAACGCACAGCC
CATGCCAAGAGTCGCGTTTATACCCGGTTACGGCAAAAGCCGATATATGG
GCGAATAAAAATCGAATGTATAGATAGATGTATATATATCGGACTGATAT
TTACACAATCCCATTTGAAACCCTTGATATTTGTTGGCAATATGTAGTAG
ACGTTATGAAGTTGAAAGGTGAAATTCAAAAGGCCGCCCTTTTGGGTGCC
AGAGGCTCTTTTGAAAAAAAAATCAGCCTAATATCCCATACGTACAGAAA
TCTCGGCATCATCACCGACGTATTTATGATGAAAAATGAAAAATCAGTGC
ATAAAGCCAATGCACGTCATTATGTGGCCAGTAGTAGAATTAGGATGTCA
CCTTTCCTACTGGATCAAGTTGAAAAATCAGGATCGATCGATGCGCTTCT
TGCGGGTTGAACCGCCCTCACCCAATGCACTTTCTGTGCTGTATCTATTG
CACCCCACGGAAAAATCTTGGCTATTTCGGGAATTTCAATAGCGAATGCG
ATTGCTGGCGACGAGGCTCATTTCCGATATCCAATAAATTCATGATATTT
TCCGGTCAAACCTCATCAGCAGCTGCCTCCCCACCCCCCCCTCTGCCCCG
AAAAAAACATGATAAAAAAAAGACAGATTGTGCCTTTAGGGATTAGATCT
GAATTGGCAATAGACCAACAGATGATTTGGCTTAAAACGACTCGCTAGCG
TGTTTCAGATCGAAGATCGGCCGGATTTACAACGTAACGACCGTGTCATG
TGCACAGCTATCTGATTCGGGTAGGTATGAATGTAGGCTTAATAGAAAAG
TGATTCATGCGTTGGAAGAAAAGCTTGACCAGAGTTGGAGCTATTCCGGC
ACGTAAAACTTTTAAACCGTGAACCTTTCCAAACGGCACAAATTTCTGTA
CAATGCTAGATGTTTTATGCCTCCCGAATCCAATTGTCCAGTCAATCGTC
CATCTTTCGCGCGCCCCTGTGTTGGTCGGAATTTACTTGTTGTTGTGTAT
TATCTATCTTTGGGGGGGGGGACTGCAGCAGCGGGGCCATGTCTGCAGCG
GATAGGCTCATGTCTCCAGCGGCCGCCAAGGGCAGCAAGATTGCACCCAG
TCCGATGCGAAAGAGGACAGCTGCTGCTGCGTCGGCGATGGGAAACGAGG
GCGAATTAGCTGTGAGTTTTTTTTTGCTCTAGTTATTTGTGCATTAGTGG
CGGAGGGCACCGTGCACCCGCTCTGTGCTGTATTGTCGAAAATGGTTTAC
GAAATACGTTTAATCCGTATAGATAGATTGTCGGTTACATTCTTTCTCGT
GAAATTTTATCGGAGACGATGTTTTTTTGGGGTAGGTGCCATTTTGGTAA
ATGCAGTTGGAAAGGAAGAAGATGGTTCTAGAGGTCTTTTAGTGGGTGCA
ACCCCCACATTGCCTAGTTGGTTCGGCCGAACCGGGGTGGCGCCTACCCC
GCAGAGGAATAAATAACAGAGTCTCTTGATTATTTAGTTATCATGGCGGT
ATTGTTGTTGTTTTGAGCTCAATATTCATCATACCAAATTTATTTCAAAT
TTCACACAGGCTTATATATGTCATGTTGGTGTTGATTTCTTTTAGACGTG
TTTTTTTTTGGAGCTGATCAGAGCCGGTACACCGAGCGAAAAATAGTGTC
AACCCGGTATATTTTTTCCCCATAACTCACGGTGACACCAAATACAACAA
GCTCCACCGGAACCTCATATGGCACACTCTCATACACCCACGGCAGTCAT
TCGTCGAAGAACCACTAGAGGAAAACGCGTTTTGGCCTCCTACCACCGCC
GCAAAGTTGGTGATTTCCTGAGGGCACCACATTATACCGTTTGTAGACCA
AAAAAGCATGTATTGTCTGGGATAATCGTAGACAGCAGGCCGCTCTTCTT
GCTGTGTGCAGTAGTAAGGAAGCTGTGTGCTTGTCCTGAGCGAAAATGGA
AATACTTGTTTGCCCAATTTGCCAGCTTTGACTCTGTGCGGCAATCGTAC
TTAGCCGGCCGGCCCCTCTTGAAGCAACACAACCAACCAAGCCTACAATG
CCAACAACACTTGGTTGGGTATGATGCTGGCATGTATCCTGATTCTTTCT
GTCGGGTTCTTTCATCAGCGGGAGGGCCAGAAAAAGATCCAGCGTGGTGG
TCGTTAGAGCCAGCGAAGTCCAGCCTTTGTGGAAAATAGTGACATTTATG
TTCGGTGGTAGGCTGTGTTGGTGTGTTGCATGTAGGAAGATCCCGTTGCC
GAATTGGTCTACAAGAGGTACAGGTTGGTGCCCTCAGGAAATGACCAACT
TTGCGGCGATGTTACGAAGCCAAAACGCGTTTTTTTTTTTTTTTTTCTAG
TGCTTTTTTCGACGAATGGCTGCCGTGGATGTATGAGAGTATGCCATATG
AGTTTTCGGTGGAGCCTGTTGTATTTGGTGTCACCGTGAGTTACGGGGGA
ATATTGTACCGGGTTGAGACCATTTTCCGCCCGGTGTACCGGCTCTGGAC
TAGCGCCCTTCTTTTTTTTTCAATGAGCGGGATGAATATTTTACCATCTC
GCCGCCCAATTGCCGTTCTGCGTTGGACTTACTCAGCGTGCGGAGTTGAG
AATGCCGCGATGGCTTTGGGACACCGTGTTCCAATACCCTATGGCGGCGG
GAGACACAAGGACGCAATACTCGGACGGGTCGACGTTCGTGGGGCCGTTG
AAGGTGTGCGTGCGTTTTCTGTTCGTTTGGTTGAATTCTGTAATATTTTA
AAGATTTACTCTCTGGTGGGTTGGTTGTCAACGATGAGTTGCGACACTTT
CGCGACTTTTTTTTTTTGTGTGTGTCGGAACATTGTTTATTAGTTTTTTT
CTTCAATGTAATCCATTTGTCAGACCCGCGGTCAGTTAGGGGCCTAAATT
TCCCAACGACAATACTAGACATGTAAGAACTACCCGACACAGTCCGTACT
TCTGGCAGCAGGTGTACCCCACTGTAATGTACCCTTTTTTTTCTCAAATA
GTTGAACCCAGTCCGGTCAGCCAGACCCGCGGTCTGAGAGTAGAATGCCC
TATTTTTCGGTGAAGAAATCTGCTAACGTTTTTGATGCTAATAACGACCA
GAGCGCAGAAGGTCTCGACGGTGAAGCTGGGCATGAGACAACAGTCACCA
CAACTTCATATCTCTAATAGGTATCTAATTCTTGTATGCAGCATAACCAT
TATGCCTCTCACCTATCTACAACCTGGCGCTATATTTCGCGACAAAATGA
AAGAAGTTGCTCCTGCCTGGACAGCACTGCCGTGAACGTTTTGTCCGTTG
AAAAGAGCTGACGGGGATGGCCGAGGGCAGACCAAAGGATCTCCTGATTA
CTTTCTCTCCAGTGTCATTTTCAATTTAATATTCTTGACGGAACAGTCTA
TTTGATGGCTTCGACGGGTTTGGGCTTGTAACGCGAGGGTAAAGACAAGA
TGTTGGAGCTTTTATTAGAGTGACAGAAAGGGAGGAGGCATTGGTTCACT
CAGTCCTTGCTCGCAACCAATCCGTAATGAGAAATTCAGATACGAACGAG
ATTCTATGTAGATTCGAACCGGATTCACATCAAGAAATAAGAATCAGAAC
AAAAAAAACTCGGAGATAATCCCAGGAAAGTTCGCAACCGTTGTGCCAAT
GTAGTCTGTATCACTCGTATTTACAGGATAAATCAATGGATCCAGGTGGT
AAAACCATCTAACACGCGTATAGTCCGACACAATCAACAGGTCAGCCTGA
CCTTTTATATAATACTCTAGGGTAGTGGTCATCATTCATGGTCCTTTCGG
AATAGTTTTTCAACTCTTTACTCAAGTAACTTGTGGACAAGTTATCTTCA
CATACATCGTGCCCTGTCTACAAACGCAGCGGGCCATTTTGCGTGTGTAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTCCTAC
TCGCCCTGGTAACGGAGGCAGGATATTCCTGTTTGGGCTCGGTATCGATA
CGGTTTAGACCTCTTCGAAACAGGTTAAAACTACGGACTGTGGGTAGTTG
GTGCGGCGTGTGTGCGAGGGCCGCCTACCTCTAGAGTATGACAGAAGCCC
AGGCAGGGTTTGGAGAAATCACTGGACAAAACACAGAGGATTCTCGAGCA
AATGAAGGCGTATCAGATATAGCCCAGCGCTGGTCATCACAGGAGTGTTT
ACTCACGATTGGTTTTTGTTCCTGCTGTTTTTTTCTTTTTTTTCTTTCGA
TTACCCAGGATGGAATGCGGCATGGCAAGGGGGCGTACTTTTTCGAGGAC
GGCAGCAGATATGAGGGCGGATTCCGGGAGGACAAGCGACACGGTGCTGG
CACTTTGATTCTTGCGGGGGGGGGAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig251:34938..40114+ >mRNA_H-paniculata_contig251.6828.1 ID=mRNA_H-paniculata_contig251.6828.1|Name=mRNA_H-paniculata_contig251.6828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig251:34938..40114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCGCGAGCAGCGCGAGGAGCGATCCCTCCGCCTATTGAAACCCGTGT
TTTGCCTGTGTTCGTGGATGACCGAGAGCCGCATGGCAGCCAGCGCGAGC
AGCGCGAGGAGCGATCCCTCCGCCTATTGAAACCCGTGTTTTGCCTGTGT
TCGTGGATGACCGAGAGCCGCATGGCAGCAGCGGGGCCATGTCTGCAGCG
GATAGGCTCATGTCTCCAGCGGCCGCCAAGGGCAGCAAGATTGCACCCAG
TCCGATGCGAAAGAGGACAGCTGCTGCTGCGTCGGCGATGGGAAACGAGG
GCGAATTAGCTCAGCGGGGCCATGTCTGCAGCGGATAGGCTCATGTCTCC
AGCGGCCGCCAAGGGCAGCAAGATTGCACCCAGTCCGATGCGAAAGAGGA
CAGCTGCTGCTGCGTCGGCGATGGGAAACGAGGGCGAATTAGCTCGTGCG
GAGTTGAGAATGCCGCGATGGCTTTGGGACACCGTGTTCCAATACCCTAT
GGCGGCGGGAGACACAAGGACGCAATACTCGGACGGGTCGACGTTCGTGG
GGCCGTTGAAGCGTGCGGAGTTGAGAATGCCGCGATGGCTTTGGGACACC
GTGTTCCAATACCCTATGGCGGCGGGAGACACAAGGACGCAATACTCGGA
CGGGTCGACGTTCGTGGGGCCGTTGAAGGATGGAATGCGGCATGGCAAGG
GGGCGTACTTTTTCGAGGACGGCAGCAGATATGAGGGCGGATTCCGGGAG
GACAAGCGACACGGTGCTGGCACTTTGATTCTTGCGGGGGGGGGAGATGG
AATGCGGCATGGCAAGGGGGCGTACTTTTTCGAGGACGGCAGCAGATATG
AGGGCGGATTCCGGGAGGACAAGCGACACGGTGCTGGCACTTTGATTCTT
GCGGGGGGGGGA back to top
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