mRNA_H-paniculata_contig2504.6817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2504.6817.1
Unique NamemRNA_H-paniculata_contig2504.6817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2504.6817.1 vs. uniprot
Match: D8LKI3_ECTSI (Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.640e-22
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:  109 RPRLAGWGLPLGSTRAYGWIFDAVRTRLAEGHIVGCSRQVWHRDPWESDHAEEGKEQDHTDAGGAFVDGLGPQTRRSTAVDGFLFPPSNRVMRGLRVGVSYCILEMFER 435
            RPR+AGWG+  G+T   GW+F+ +R RL++G ++GCSRQ W R PW                      G+G Q  +  A  G LFPPSNRVM+GL  GVSYC+LE FE+
Sbjct:  302 RPRIAGWGILAGTTPPLGWVFENIRNRLSDGQVLGCSRQAWVRCPW----------------------GIGDQ--QEAADGGMLFPPSNRVMKGLCSGVSYCVLEAFEK 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2504.6817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKI3_ECTSI1.640e-2245.87Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2504contigH-paniculata_contig2504:4342..5619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D8LKI3
KEGG koko:K08574,ko:K08579
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons3
Model size440
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2504.6817.1prot_H-paniculata_contig2504.6817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2504 4342..5619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.0896914-CDS-H-paniculata_contig2504:4341..44021622929736.0896914-CDS-H-paniculata_contig2504:4341..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2504 4342..4402 -
1691480988.8338685-CDS-H-paniculata_contig2504:4341..44021691480988.8338685-CDS-H-paniculata_contig2504:4341..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2504 4342..4402 -
1622929736.10451-CDS-H-paniculata_contig2504:4693..48521622929736.10451-CDS-H-paniculata_contig2504:4693..4852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2504 4694..4852 -
1691480988.8499646-CDS-H-paniculata_contig2504:4693..48521691480988.8499646-CDS-H-paniculata_contig2504:4693..4852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2504 4694..4852 -
1622929736.1432002-CDS-H-paniculata_contig2504:5401..56191622929736.1432002-CDS-H-paniculata_contig2504:5401..5619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2504 5402..5619 -
1691480988.8583903-CDS-H-paniculata_contig2504:5401..56191691480988.8583903-CDS-H-paniculata_contig2504:5401..5619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2504 5402..5619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2504.6817.1

>prot_H-paniculata_contig2504.6817.1 ID=prot_H-paniculata_contig2504.6817.1|Name=mRNA_H-paniculata_contig2504.6817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MSDAAQSTLAMSEPPQSLPHDVGVARIGGEPRGGTVRPRLAGWGLPLGST
RAYGWIFDAVRTRLAEGHIVGCSRQVWHRDPWESDHAEEGKEQDHTDAGG
AFVDGLGPQTRRSTAVDGFLFPPSNRVMRGLRVGVSYCILEMFERA
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mRNA from alignment at H-paniculata_contig2504:4342..5619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2504.6817.1 ID=mRNA_H-paniculata_contig2504.6817.1|Name=mRNA_H-paniculata_contig2504.6817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig2504:4342..5619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGATGCGGCGCAATCAACGCTAGCCATGTCGGAACCGCCGCAATC
ATTGCCACATGACGTGGGGGTGGCACGAATAGGAGGGGAGCCACGGGGAG
GGACTGTCCGCCCTCGGTTGGCCGGATGGGGCTTGCCTCTTGGATCCACC
CGCGCTTATGGATGGATTTTCGATGCTGTTCGGACACGACTGGCGGAGGG
TCATATAGTGGGTTGTAGGTAATTTACGAGTTACGTATCTTGTGTGCATG
ATATGGTATTTTTTCGACTGCCGTTCACGAATAGGGAGGACGAGTCCGAC
AGAGAAACTCCGTCGCGTTGCGCTTCGTTGCGTTGATATGATGTATTCGA
GCGGGAAGCGGGAAAGCAGGTATGTCGGGAGCATTTATCTACAGCCGTGT
AAATAGCCACGCGATGAAGCCAGGATGAGTTGGGCGTGTATCCTGGAAGG
TCGCTAATCACTACTGTATTTAGCTGCGAACAATCACTAAACTAGAGGAC
TGTGAACAATATTTTCACGTGTCGATTTCTGCTGTGTTGTCTGGTTGGTG
CAGGTTCAATCTCGCGATGCGTGTCGAACCGTAGCCCAGCTGCATCGAAC
TTTATTGGGAGAAACGTTGGTTTACTCAGTTCTTGTTTTTACGACAAATA
GCTCGTAGTAAGTCCCCTCTTGCTTCCTCTCTCTCTCTCGTTTTCCCTTT
CTCTCTGTACTCTCCTCTGAACATCCAAAGTGCTTGTGCTCATGTCCTAA
ACTTTGTAAAAAAATAGCCGGCAGGTGTGGCATCGAGATCCATGGGAGAG
TGACCATGCTGAGGAAGGGAAAGAGCAAGATCACACCGACGCGGGGGGAG
CCTTCGTGGATGGACTAGGGCCGCAGACGCGAAGGAGCACCGCCGTCGAC
GGATTTCTATTCCCCCCGTCAAACAGGTAGGAAAAAGCCGGAATCAAGCA
TGTCCGGCACACGCAACTCCTGCGTGATTTTGTCACATACACGTCGTGAT
TGGCTAAGAATCTACCGTCCAGAGCCTTGTGGTGCGGTAGATTAGCTGTC
ATGAGGTGCGAACAACAGGTATAGACGAGAAAAACGCGCACAAAGAAACA
GGCACACAAGTACGCAGCAGACGGGCACATAGGAGGACCTCCACCGTCCA
TGCCTTGGCATTACAATCGTGGTTCTCGCATCTCTGCTGTGTGTACGTGC
TGAAAACGATATGGCAGGGTGATGAGGGGCTTACGTGTGGGGGTCTCCTA
CTGCATTCTCGAGATGTTCGAGAGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2504:4342..5619-

>mRNA_H-paniculata_contig2504.6817.1 ID=mRNA_H-paniculata_contig2504.6817.1|Name=mRNA_H-paniculata_contig2504.6817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig2504:4342..5619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGATGCGGCGCAATCAACGCTAGCCATGTCGGAACCGCCGCAATC
ATTGCCACATGACGTGGGGGTGGCACGAATAGGAGGGGAGCCACGGGGAG
GGACTGTCCGCCCTCGGTTGGCCGGATGGGGCTTGCCTCTTGGATCCACC
CGCGCTTATGGATGGATTTTCGATGCTGTTCGGACACGACTGGCGGAGGG
TCATATAGTGGGTTGTAGATGTCAGATGCGGCGCAATCAACGCTAGCCAT
GTCGGAACCGCCGCAATCATTGCCACATGACGTGGGGGTGGCACGAATAG
GAGGGGAGCCACGGGGAGGGACTGTCCGCCCTCGGTTGGCCGGATGGGGC
TTGCCTCTTGGATCCACCCGCGCTTATGGATGGATTTTCGATGCTGTTCG
GACACGACTGGCGGAGGGTCATATAGTGGGTTGTAGCCGGCAGGTGTGGC
ATCGAGATCCATGGGAGAGTGACCATGCTGAGGAAGGGAAAGAGCAAGAT
CACACCGACGCGGGGGGAGCCTTCGTGGATGGACTAGGGCCGCAGACGCG
AAGGAGCACCGCCGTCGACGGATTTCTATTCCCCCCGTCAAACAGCCGGC
AGGTGTGGCATCGAGATCCATGGGAGAGTGACCATGCTGAGGAAGGGAAA
GAGCAAGATCACACCGACGCGGGGGGAGCCTTCGTGGATGGACTAGGGCC
GCAGACGCGAAGGAGCACCGCCGTCGACGGATTTCTATTCCCCCCGTCAA
ACAGGGTGATGAGGGGCTTACGTGTGGGGGTCTCCTACTGCATTCTCGAG
ATGTTCGAGAGGGCGGGTGATGAGGGGCTTACGTGTGGGGGTCTCCTACT
GCATTCTCGAGATGTTCGAGAGGGCG
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