mRNA_H-paniculata_contig24989.6799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24989.6799.1
Unique NamemRNA_H-paniculata_contig24989.6799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 5.120e-53
Identity = 99/187 (52.94%), Postives = 130/187 (69.52%), Query Frame = -2
Query:    6 GNGNCDSYNNNPSCAYDGGD----------CCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 536
            GNG C+  NNN  C+YDGGD          CC CTC G+LC    + CLDPD   E  Y CE +PP  LPC  E Q+ WVV+++ QA ALA A+NCSGG+FEV+W   VVV+  F+VVDGT L ITG GSSAA+DG+ +TRLF+VVNA+LH++ ++V +G +T GG +A  G++LT ++T F+ NTA
Sbjct:   75 GNGLCEEGNNNVFCSYDGGDVSLVACSSLLCCYCTCSGALCQSVTFDCLDPDADDE-FYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTA 260          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.890e-51
Identity = 95/178 (53.37%), Postives = 125/178 (70.22%), Query Frame = -2
Query:    3 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTAS 536
            G+G+C   NNN  C YDGGDCC C+C+G  C    + CLDP    E++++CE SP   LPC  + Q+ WVVE++TQA ALA A+NCSGG FEV+W   VVV + F+VVDGT+L I+G  SSA ++G+ STR+F+VVNA L++S +NV  G +T GG +A   SSLT + T FV NTAS
Sbjct:   74 GDGSCSKANNNDLCGYDGGDCCVCSCQGVNCMRTSFECLDP-SANEELHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVVGQPFYVVDGTVLTISGADSSAVVEGNASTRIFTVVNADLYLSHVNVSYGSSTTGGAIAAARSSLTLNGTNFVGNTAS 250          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.350e-50
Identity = 93/178 (52.25%), Postives = 126/178 (70.79%), Query Frame = -2
Query:    3 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTAS 536
            G+G+C   NNN  C YDGGDCC C+C+G  C    + CLDP  + E++++CE SPP  LPC  + Q+ WVVE++ QA ALA A+NCSGG FEV+W   VVV + F VVDGT+L ++G  SSA ++G+ STR+F+VVNA+L++S +NV  G +T GG +A   SSLT + T+FV N AS
Sbjct:  133 GDGSCSEANNNDLCGYDGGDCCVCSCQGVNCMTTSFECLDPSAS-EELHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVVGEPFNVVDGTVLTVSGADSSAVVEGNASTRIFTVVNANLYLSGVNVSYGSSTVGGAIAAARSSLTLNGTSFVGNAAS 309          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.410e-45
Identity = 89/185 (48.11%), Postives = 119/185 (64.32%), Query Frame = -2
Query:    6 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSS--------AAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 536
            G+G C   NNNP+C YDGGDCC C+C G+LCGG    CLDP   G++ Y C    P+ LPC  E Q+ WVV+   +A ALA A+NCSGG+FEV+W   VV++    V  GT+L ITG GSS        A + G+  TRLF+VV+A+L++S++ +  G +T GG +A  GS+LT   T F+ NTA
Sbjct:  235 GDGQCQEENNNPACGYDGGDCCICSCSGTLCGGL-ADCLDP-SAGDEFYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPIVVGAGTVLTITGAGSSTVGDDDSGAVIHGNEGTRLFTVVDAALYLSNITIAFGSSTVGGAIAAAGSTLTLVETMFIANTA 417          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.840e-43
Identity = 86/177 (48.59%), Postives = 116/177 (65.54%), Query Frame = -2
Query:    6 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 536
            G+G CDS  N  SC +DGGDCC C+C G+ C  +D+ C DP+   ++ + C+  PP TLPC VE Q  W+VE   QA  LA A+NCSG +FEV+W   V +    ++  GT+L ITG G+S+ +DG+  TRLF+V NA LH+S+LN+ NG +  GG +A   SSLTF+ T FV N A
Sbjct:  222 GDGFCDSELNTASCGWDGGDCCVCSCNGTACSISDFDCFDPNA--DEFFECQAPPPATLPCSVEVQLTWLVETPLQAQTLAAAVNCSG-SFEVEWRGRVAIVDPIYIGGGTVLTITGDGASSVIDGNTLTRLFTVNNAVLHLSNLNISNGASIVGGAIAAANSSLTFNGTNFVGNQA 395          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 8.520e-43
Identity = 90/179 (50.28%), Postives = 120/179 (67.04%), Query Frame = -2
Query:    3 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGV-GSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTAS 536
            G+G C+  NN  SC YDGGD            G +  C+DP    E++Y CE  P  T PCP + +  WVV ++ QALALA A+NCSGG+FEV+W   VVV++T FV DGT+L ITG  GS+AA+DG+  TRLF+VVNA+LHVS +N+ +G +  GG +A  GS+LTF++T F+ N AS
Sbjct:  170 GDGACNPENNIASCGYDGGD------------GGELDCVDPSAP-EELYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTVVNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVAS 335          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 6.680e-41
Identity = 86/176 (48.86%), Postives = 116/176 (65.91%), Query Frame = -2
Query:    6 CDSYNNNPSCAYDGGDCCACTCEGSL--CGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVG-SSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 524
            CD  NNN  C +DGGDCC CTC  S   CG   + CLDP  T   +Y+C E+P  T PC  E Q  WVVE++ QA ALA  +NCSGG+F+V+W   V +D   F+V GT L +TG G +SA +DG+G+TRLFSV NA+L +  + +R+G +  GG +A  G++L F  T+FV+N+A
Sbjct: 1982 CDLENNNAECNWDGGDCCECTCVDSQYECGIQGFSCLDPSATD--LYDCGETPAAT-PCSAEAQEAWVVEDSAQAQALAANVNCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLRGVELRSGFSAIGGAIAASGATLAFHNTSFVNNSA 2154          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.640e-37
Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = -2
Query:    6 CCACTCEGSL--CGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVG-SSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 476
            CC CTC  SL  CG   + CLDP  T   +Y+CEE PP   PC  E Q+ WVVE++ QA ALA  +NCSGG+F+V+W   V +D   F+V GT L +TG G +SA +DG+G+TRLFSV NA+L +S + +R+G +  GG +A  G++L F+ T+FV+N+A
Sbjct:   85 CCECTCVDSLFSCGIAGFSCLDPSATD--LYDCEE-PPAATPCSAEAQQAWVVEDSAQAQALAANVNCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSA 241          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.270e-36
Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = -2
Query:    6 TCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKA-TFGGVVATVGSSLTFSRTAFVDNTA 464
            TC  + C  + + CLDP G+    Y C+E PP TLPC  E Q+ WVV ++ +ALALA A+NCSGG+FEV+W   VVV+   +V DGTI+ +TGVGS+A +DG  +TRLF+VV+ASLH+ ++N+  G +   GG +A  GS +T + T+ V N A
Sbjct:    4 TCSHADCYSSLFDCLDP-GSSNGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGSTAVIDGHAATRLFTVVDASLHLRNVNISYGASRAVGGGIAAAGSRVTLNHTSIVGNRA 156          
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 8.370e-34
Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = -2
Query:    6 GNGNCDSYNNNPSCAYDGGDCCACTCEGS--LCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAA---MDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSR-TAFVDNTA 536
            GNG C   NN P C YDGGDCC C+C+    +C G  + CLDP       +N  E   +T  C  +  REW+VENT  A+ LA A+NC+GGTF+V+W   V+V +T ++  GT + ITGV ++A+    DG+G +R+F V+N+SL++  + + NG    GG + +   ++TFS  +A V+N+A
Sbjct:   57 GNGLCIPDNNTPECGYDGGDCCECSCQPGQFMCLGR-FDCLDPS------FNTTECVTNTTACAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLVPQTLWISQGTTVNITGVATTASPAVADGNGESRIFGVINSSLNLHGMTLSNGHGVVGGAIFSALGTVTFSGGSALVNNSA 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE5.120e-5352.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2X5_ECTSI3.890e-5153.37Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE1.350e-5052.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTI5_ECTSI4.410e-4548.11Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G5Y7_ECTSI1.840e-4348.59Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI8.520e-4350.28Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FHG7_ECTSI6.680e-4148.86LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHH1_ECTSI2.640e-3749.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTL7_ECTSI1.270e-3648.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLP6_9PHAE8.370e-3441.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24989contigH-paniculata_contig24989:1993..2532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size541
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.0840225-CDS-H-paniculata_contig24989:1992..23341622929733.0840225-CDS-H-paniculata_contig24989:1992..2334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24989 1993..2334 +
1691480987.4309921-CDS-H-paniculata_contig24989:1992..23341691480987.4309921-CDS-H-paniculata_contig24989:1992..2334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24989 1993..2334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.1060388-UTR-H-paniculata_contig24989:2334..25321622929733.1060388-UTR-H-paniculata_contig24989:2334..2532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24989 2335..2532 +
1691480987.4436421-UTR-H-paniculata_contig24989:2334..25321691480987.4436421-UTR-H-paniculata_contig24989:2334..2532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24989 2335..2532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24989.6799.1prot_H-paniculata_contig24989.6799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24989 1993..2334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24989.6799.1

>prot_H-paniculata_contig24989.6799.1 ID=prot_H-paniculata_contig24989.6799.1|Name=mRNA_H-paniculata_contig24989.6799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
LEAVLSTNAVRLKVKLEPTVATTPPKVALPFLTFRSLTCKEALTTEKRRV
EPLPSIAALEPTPVIFRIVPSTTKNVLSTTTSLSHLTSNVPPEQFKASAK
ASACVVFSTTHSR*
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mRNA from alignment at H-paniculata_contig24989:1993..2532+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24989.6799.1 ID=mRNA_H-paniculata_contig24989.6799.1|Name=mRNA_H-paniculata_contig24989.6799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig24989:1993..2532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGCGGTGTTGTCGACGAACGCAGTCCGACTGAAGGTTAAACTAGA ACCTACAGTAGCTACAACACCGCCAAAGGTGGCTTTGCCATTTCTGACGT TCAGGTCACTCACGTGCAAGGAAGCATTAACGACAGAAAAGAGGCGAGTG GAACCACTCCCGTCCATAGCAGCACTCGAACCGACACCCGTTATCTTTAG AATAGTCCCATCCACAACAAAAAATGTCTTGTCTACGACGACATCACTTT CCCATTTAACTTCGAATGTTCCACCTGAGCAGTTCAAGGCTTCCGCTAAA GCTAGTGCCTGCGTAGTGTTCTCTACCACCCACTCACGCTGATGTTCAAC TGGGCAAGGAAGGGTGTCGGGCGGCGATTCCTCACAGTTGTACACCTTCT CACCAGTACCATCGGGGTCCAAACAAGGGTAGTCATTGCCGCCGCACAAA GAGCCTTCGCATGTGCAAGCGCAGCAGTCACCACCGTCGTAAGCACACGA CGGGTTGTTGTTGTAGGAATCGCAGTTCCCGTTGCCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig24989:1993..2532+

>mRNA_H-paniculata_contig24989.6799.1 ID=mRNA_H-paniculata_contig24989.6799.1|Name=mRNA_H-paniculata_contig24989.6799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig24989:1993..2532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGCGGTGTTGTCGACGAACGCAGTCCGACTGAAGGTTAAACTAGA
ACCTACAGTAGCTACAACACCGCCAAAGGTGGCTTTGCCATTTCTGACGT
TCAGGTCACTCACGTGCAAGGAAGCATTAACGACAGAAAAGAGGCGAGTG
GAACCACTCCCGTCCATAGCAGCACTCGAACCGACACCCGTTATCTTTAG
AATAGTCCCATCCACAACAAAAAATGTCTTGTCTACGACGACATCACTTT
CCCATTTAACTTCGAATGTTCCACCTGAGCAGTTCAAGGCTTCCGCTAAA
GCTAGTGCCTGCGTAGTGTTCTCTACCACCCACTCACGCTGACTGGAAGC
GGTGTTGTCGACGAACGCAGTCCGACTGAAGGTTAAACTAGAACCTACAG
TAGCTACAACACCGCCAAAGGTGGCTTTGCCATTTCTGACGTTCAGGTCA
CTCACGTGCAAGGAAGCATTAACGACAGAAAAGAGGCGAGTGGAACCACT
CCCGTCCATAGCAGCACTCGAACCGACACCCGTTATCTTTAGAATAGTCC
CATCCACAACAAAAAATGTCTTGTCTACGACGACATCACTTTCCCATTTA
ACTTCGAATGTTCCACCTGAGCAGTTCAAGGCTTCCGCTAAAGCTAGTGC
CTGCGTAGTGTTCTCTACCACCCACTCACGCTGA
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