mRNA_H-paniculata_contig24989.6799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 191 bits (485), Expect = 5.120e-53 Identity = 99/187 (52.94%), Postives = 130/187 (69.52%), Query Frame = -2
Query: 6 GNGNCDSYNNNPSCAYDGGD----------CCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 536
GNG C+ NNN C+YDGGD CC CTC G+LC + CLDPD E Y CE +PP LPC E Q+ WVV+++ QA ALA A+NCSGG+FEV+W VVV+ F+VVDGT L ITG GSSAA+DG+ +TRLF+VVNA+LH++ ++V +G +T GG +A G++LT ++T F+ NTA
Sbjct: 75 GNGLCEEGNNNVFCSYDGGDVSLVACSSLLCCYCTCSGALCQSVTFDCLDPDADDE-FYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTA 260
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 186 bits (471), Expect = 3.890e-51 Identity = 95/178 (53.37%), Postives = 125/178 (70.22%), Query Frame = -2
Query: 3 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTAS 536
G+G+C NNN C YDGGDCC C+C+G C + CLDP E++++CE SP LPC + Q+ WVVE++TQA ALA A+NCSGG FEV+W VVV + F+VVDGT+L I+G SSA ++G+ STR+F+VVNA L++S +NV G +T GG +A SSLT + T FV NTAS
Sbjct: 74 GDGSCSKANNNDLCGYDGGDCCVCSCQGVNCMRTSFECLDP-SANEELHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVVGQPFYVVDGTVLTISGADSSAVVEGNASTRIFTVVNADLYLSHVNVSYGSSTTGGAIAAARSSLTLNGTNFVGNTAS 250
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.350e-50 Identity = 93/178 (52.25%), Postives = 126/178 (70.79%), Query Frame = -2
Query: 3 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTAS 536
G+G+C NNN C YDGGDCC C+C+G C + CLDP + E++++CE SPP LPC + Q+ WVVE++ QA ALA A+NCSGG FEV+W VVV + F VVDGT+L ++G SSA ++G+ STR+F+VVNA+L++S +NV G +T GG +A SSLT + T+FV N AS
Sbjct: 133 GDGSCSEANNNDLCGYDGGDCCVCSCQGVNCMTTSFECLDPSAS-EELHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVVGEPFNVVDGTVLTVSGADSSAVVEGNASTRIFTVVNANLYLSGVNVSYGSSTVGGAIAAARSSLTLNGTSFVGNAAS 309
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 168 bits (426), Expect = 4.410e-45 Identity = 89/185 (48.11%), Postives = 119/185 (64.32%), Query Frame = -2
Query: 6 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSS--------AAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 536
G+G C NNNP+C YDGGDCC C+C G+LCGG CLDP G++ Y C P+ LPC E Q+ WVV+ +A ALA A+NCSGG+FEV+W VV++ V GT+L ITG GSS A + G+ TRLF+VV+A+L++S++ + G +T GG +A GS+LT T F+ NTA
Sbjct: 235 GDGQCQEENNNPACGYDGGDCCICSCSGTLCGGL-ADCLDP-SAGDEFYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPIVVGAGTVLTITGAGSSTVGDDDSGAVIHGNEGTRLFTVVDAALYLSNITIAFGSSTVGGAIAAAGSTLTLVETMFIANTA 417
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.840e-43 Identity = 86/177 (48.59%), Postives = 116/177 (65.54%), Query Frame = -2
Query: 6 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 536
G+G CDS N SC +DGGDCC C+C G+ C +D+ C DP+ ++ + C+ PP TLPC VE Q W+VE QA LA A+NCSG +FEV+W V + ++ GT+L ITG G+S+ +DG+ TRLF+V NA LH+S+LN+ NG + GG +A SSLTF+ T FV N A
Sbjct: 222 GDGFCDSELNTASCGWDGGDCCVCSCNGTACSISDFDCFDPNA--DEFFECQAPPPATLPCSVEVQLTWLVETPLQAQTLAAAVNCSG-SFEVEWRGRVAIVDPIYIGGGTVLTITGDGASSVIDGNTLTRLFTVNNAVLHLSNLNISNGASIVGGAIAAANSSLTFNGTNFVGNQA 395
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 162 bits (409), Expect = 8.520e-43 Identity = 90/179 (50.28%), Postives = 120/179 (67.04%), Query Frame = -2
Query: 3 GNGNCDSYNNNPSCAYDGGDCCACTCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGV-GSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTAS 536
G+G C+ NN SC YDGGD G + C+DP E++Y CE P T PCP + + WVV ++ QALALA A+NCSGG+FEV+W VVV++T FV DGT+L ITG GS+AA+DG+ TRLF+VVNA+LHVS +N+ +G + GG +A GS+LTF++T F+ N AS
Sbjct: 170 GDGACNPENNIASCGYDGGD------------GGELDCVDPSAP-EELYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTVVNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVAS 335
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 156 bits (395), Expect = 6.680e-41 Identity = 86/176 (48.86%), Postives = 116/176 (65.91%), Query Frame = -2
Query: 6 CDSYNNNPSCAYDGGDCCACTCEGSL--CGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVG-SSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 524
CD NNN C +DGGDCC CTC S CG + CLDP T +Y+C E+P T PC E Q WVVE++ QA ALA +NCSGG+F+V+W V +D F+V GT L +TG G +SA +DG+G+TRLFSV NA+L + + +R+G + GG +A G++L F T+FV+N+A
Sbjct: 1982 CDLENNNAECNWDGGDCCECTCVDSQYECGIQGFSCLDPSATD--LYDCGETPAAT-PCSAEAQEAWVVEDSAQAQALAANVNCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLRGVELRSGFSAIGGAIAASGATLAFHNTSFVNNSA 2154
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 146 bits (368), Expect = 2.640e-37 Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = -2
Query: 6 CCACTCEGSL--CGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVG-SSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSRTAFVDNTA 476
CC CTC SL CG + CLDP T +Y+CEE PP PC E Q+ WVVE++ QA ALA +NCSGG+F+V+W V +D F+V GT L +TG G +SA +DG+G+TRLFSV NA+L +S + +R+G + GG +A G++L F+ T+FV+N+A
Sbjct: 85 CCECTCVDSLFSCGIAGFSCLDPSATD--LYDCEE-PPAATPCSAEAQQAWVVEDSAQAQALAANVNCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSA 241
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 144 bits (363), Expect = 1.270e-36 Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = -2
Query: 6 TCEGSLCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAAMDGSGSTRLFSVVNASLHVSDLNVRNGKA-TFGGVVATVGSSLTFSRTAFVDNTA 464
TC + C + + CLDP G+ Y C+E PP TLPC E Q+ WVV ++ +ALALA A+NCSGG+FEV+W VVV+ +V DGTI+ +TGVGS+A +DG +TRLF+VV+ASLH+ ++N+ G + GG +A GS +T + T+ V N A
Sbjct: 4 TCSHADCYSSLFDCLDP-GSSNGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGSTAVIDGHAATRLFTVVDASLHLRNVNISYGASRAVGGGIAAAGSRVTLNHTSIVGNRA 156
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE) HSP 1 Score: 136 bits (342), Expect = 8.370e-34 Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = -2
Query: 6 GNGNCDSYNNNPSCAYDGGDCCACTCEGS--LCGGNDYPCLDPDGTGEKVYNCEESPPDTLPCPVEHQREWVVENTTQALALAEALNCSGGTFEVKWESDVVVDKTFFVVDGTILKITGVGSSAA---MDGSGSTRLFSVVNASLHVSDLNVRNGKATFGGVVATVGSSLTFSR-TAFVDNTA 536
GNG C NN P C YDGGDCC C+C+ +C G + CLDP +N E +T C + REW+VENT A+ LA A+NC+GGTF+V+W V+V +T ++ GT + ITGV ++A+ DG+G +R+F V+N+SL++ + + NG GG + + ++TFS +A V+N+A
Sbjct: 57 GNGLCIPDNNTPECGYDGGDCCECSCQPGQFMCLGR-FDCLDPS------FNTTECVTNTTACAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLVPQTLWISQGTTVNITGVATTASPAVADGNGESRIFGVINSSLNLHGMTLSNGHGVVGGAIFSALGTVTFSGGSALVNNSA 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24989.6799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24989.6799.1 >prot_H-paniculata_contig24989.6799.1 ID=prot_H-paniculata_contig24989.6799.1|Name=mRNA_H-paniculata_contig24989.6799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp LEAVLSTNAVRLKVKLEPTVATTPPKVALPFLTFRSLTCKEALTTEKRRVback to top mRNA from alignment at H-paniculata_contig24989:1993..2532+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24989.6799.1 ID=mRNA_H-paniculata_contig24989.6799.1|Name=mRNA_H-paniculata_contig24989.6799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig24989:1993..2532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24989:1993..2532+ >mRNA_H-paniculata_contig24989.6799.1 ID=mRNA_H-paniculata_contig24989.6799.1|Name=mRNA_H-paniculata_contig24989.6799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig24989:1993..2532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |