mRNA_H-paniculata_contig2498.6797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: D7FWE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE5_ECTSI) HSP 1 Score: 152 bits (383), Expect = 6.850e-44 Identity = 89/206 (43.20%), Postives = 101/206 (49.03%), Query Frame = 1
Query: 1 MGGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFKAGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRLRRHR 618
MGGDV GARDDGLDVVNLMHGR DVPG+EV+KGLRLGGLKEAL ++A+G A+ EEFK FFSRY+GWGPGQLEAEVL AW LAACDL S+L++ HPDQPGHFW +IM RL+RHR
Sbjct: 1 MGGDVTGARDDGLDVVNLMHGRADVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFK--------------------------------------------------------------------------------------------FFSRYSGWGPGQLEAEVLGGAWELAACDLESVLESQNHPDQPGHFWGKIMGRLQRHR 114
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A6H5JA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA69_9PHAE) HSP 1 Score: 157 bits (397), Expect = 3.360e-43 Identity = 92/206 (44.66%), Postives = 103/206 (50.00%), Query Frame = 1
Query: 1 MGGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFKAGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRLRRHR 618
MGGDV GARDDGLDVVNLMHGREDVPG+EV+KGLRLGGLKEAL ++A+G A+ EEFK FFSRY+GWGPGQLEAEVLA AW LAACDL S+L++ HPDQPGHFW EIM RL+RHR
Sbjct: 235 MGGDVTGARDDGLDVVNLMHGREDVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFK--------------------------------------------------------------------------------------------FFSRYSGWGPGQLEAEVLAGAWELAACDLESVLESQNHPDQPGHFWGEIMGRLQRHR 348
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A835ZEY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY4_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 4.470e-20 Identity = 67/208 (32.21%), Postives = 100/208 (48.08%), Query Frame = 1
Query: 4 GGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFK-----AGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVS-HRHFARASRVDHRSCLCGC-GYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
GGDV RDDGLDVVN MHGR+D GIEV+KG++LGGL +AL ++A+G+A+ EFK G+ + ++ A +L + + P +L ++ A R+ R G G+ V+ + WGPGQL +V AW AACD+ ++L +T QP W E+++R+
Sbjct: 154 GGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQ------YTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVWGWLSVLCAL-------------LRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARM 342
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A835YX41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX41_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.320e-19 Identity = 61/201 (30.35%), Postives = 79/201 (39.30%), Query Frame = 1
Query: 4 GGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFKAGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
GGDV DG D VNLMHGREDV G E++KG++LGGL+EAL +A+G A+ +EFK FF RY GW PGQL+ EV A W LAACD+P+IL N+ QP W++++ R+
Sbjct: 114 GGDVVSGTGDGTDAVNLMHGREDVEGTEILKGVKLGGLEEALARVAEGTAQPQEFK--------------------------------------------------------------------------------------------FFCRYCGWAPGQLQEEVKAGIWYLAACDVPTILDNYIQ-GQPDGLWSDVLRRM 221
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A836CDX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX0_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.920e-17 Identity = 64/206 (31.07%), Postives = 93/206 (45.15%), Query Frame = 1
Query: 4 GGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFK-----AGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
GGDV RDDGLDVVN MHGR+D GIEV+KG++LGGL +AL ++A+G+A+ EFK G+ + ++ A +L + + P +L R + + S C AV GP QL +V AW AACD+ ++L +T QP W E+++R+
Sbjct: 18 GGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQ------YTDESQPAALWTEVL-----ARMGGKYKTLAENSL---CASAV---------------------GPRQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARM 188
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A836CG07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG07_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 6.010e-13 Identity = 54/192 (28.12%), Postives = 88/192 (45.83%), Query Frame = 1
Query: 46 VNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFK-----AGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
VN MHGR+D GIEV+KG++LGGL +AL ++A+G+A+ EFK G+ + ++ A +L + + P +L + ++ A + L + ++ S F WGPGQL +V AW AACD+ ++L +T QP W E+++R+
Sbjct: 3 VNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQ------YTDESQPAALWTEVLAR-MGGKYKTLAEKWGGADDLDSSYFNSYLNGNS----GVPFLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARM 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2498.6797.1 >prot_H-paniculata_contig2498.6797.1 ID=prot_H-paniculata_contig2498.6797.1|Name=mRNA_H-paniculata_contig2498.6797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp MGGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEback to top mRNA from alignment at H-paniculata_contig2498:12037..13377- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2498.6797.1 ID=mRNA_H-paniculata_contig2498.6797.1|Name=mRNA_H-paniculata_contig2498.6797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-paniculata_contig2498:12037..13377- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2498:12037..13377- >mRNA_H-paniculata_contig2498.6797.1 ID=mRNA_H-paniculata_contig2498.6797.1|Name=mRNA_H-paniculata_contig2498.6797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2498:12037..13377- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |