mRNA_H-paniculata_contig2496.6788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2496.6788.1
Unique NamemRNA_H-paniculata_contig2496.6788.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2496.6788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2496contigH-paniculata_contig2496:9292..9965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size674
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2496.6788.1prot_H-paniculata_contig2496.6788.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2496 9324..9914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.7006369-UTR-H-paniculata_contig2496:9291..93231622929731.7006369-UTR-H-paniculata_contig2496:9291..9323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2496 9292..9323 +
1691480986.8752656-UTR-H-paniculata_contig2496:9291..93231691480986.8752656-UTR-H-paniculata_contig2496:9291..9323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2496 9292..9323 +
1622929731.7300467-UTR-H-paniculata_contig2496:9914..99651622929731.7300467-UTR-H-paniculata_contig2496:9914..9965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2496 9915..9965 +
1691480986.898797-UTR-H-paniculata_contig2496:9914..99651691480986.898797-UTR-H-paniculata_contig2496:9914..9965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2496 9915..9965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.7177758-CDS-H-paniculata_contig2496:9323..99141622929731.7177758-CDS-H-paniculata_contig2496:9323..9914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2496 9324..9914 +
1691480986.8872604-CDS-H-paniculata_contig2496:9323..99141691480986.8872604-CDS-H-paniculata_contig2496:9323..9914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2496 9324..9914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2496.6788.1

>prot_H-paniculata_contig2496.6788.1 ID=prot_H-paniculata_contig2496.6788.1|Name=mRNA_H-paniculata_contig2496.6788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MRIRPNTFAFCALHNAMARLRQNVGRLERNIYLKQNVKTPQKSTLSSCSV
GVLTTLPVLCNLLQLPKASPQSPHVATPSSEIQLMVDGNCFRPHSSHTPR
LPICSTCAVVAQKPLKYPRALARFTDPAPPSHASFSLKAPSRVASHEQRF
YTFSPVPPNTHYTYYTTYCAHREAPEWGVLRKNKKVKHSAKTCVAR*
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mRNA from alignment at H-paniculata_contig2496:9292..9965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2496.6788.1 ID=mRNA_H-paniculata_contig2496.6788.1|Name=mRNA_H-paniculata_contig2496.6788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=674bp|location=Sequence derived from alignment at H-paniculata_contig2496:9292..9965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCATGTAGCAAGAATGGTACAATCGTCAAAATGCGCATCAGGCCCAAC
ACGTTCGCCTTCTGCGCGCTTCACAATGCTATGGCAAGACTACGTCAAAA
CGTTGGCAGATTGGAGAGAAACATCTATTTAAAACAAAACGTAAAAACGC
CGCAAAAGTCCACGTTGAGCTCGTGCAGCGTTGGTGTCCTGACTACACTG
CCCGTGCTGTGCAACTTGCTCCAACTGCCGAAGGCATCACCACAGTCCCC
CCATGTCGCCACACCATCATCCGAAATACAACTGATGGTAGATGGGAATT
GTTTTCGCCCTCACAGCTCTCACACACCAAGATTGCCCATCTGCAGTACA
TGTGCAGTAGTAGCACAAAAACCACTCAAATATCCACGAGCTCTAGCCAG
ATTTACCGATCCCGCCCCACCATCACACGCATCCTTTTCCCTGAAGGCAC
CGAGCCGCGTAGCCAGCCATGAGCAGCGATTTTACACCTTCTCGCCCGTG
CCCCCCAACACCCACTACACATACTACACAACATACTGCGCACACAGAGA
AGCACCGGAGTGGGGGGTGTTGCGAAAAAACAAAAAAGTAAAACACTCCG
CAAAAACCTGTGTTGCACGGTAGCCCGTCAAAACAGCCTTCTGAAGTGTA
CGACAAAACACCTTGTAATGTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig2496:9292..9965+

>mRNA_H-paniculata_contig2496.6788.1 ID=mRNA_H-paniculata_contig2496.6788.1|Name=mRNA_H-paniculata_contig2496.6788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig2496:9292..9965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCATCAGGCCCAACACGTTCGCCTTCTGCGCGCTTCACAATGCTAT
GGCAAGACTACGTCAAAACGTTGGCAGATTGGAGAGAAACATCTATTTAA
AACAAAACGTAAAAACGCCGCAAAAGTCCACGTTGAGCTCGTGCAGCGTT
GGTGTCCTGACTACACTGCCCGTGCTGTGCAACTTGCTCCAACTGCCGAA
GGCATCACCACAGTCCCCCCATGTCGCCACACCATCATCCGAAATACAAC
TGATGGTAGATGGGAATTGTTTTCGCCCTCACAGCTCTCACACACCAAGA
TTGCCCATCTGCAGTACATGTGCAGTAGTAGCACAAAAACCACTCAAATA
TCCACGAGCTCTAGCCAGATTTACCGATCCCGCCCCACCATCACACGCAT
CCTTTTCCCTGAAGGCACCGAGCCGCGTAGCCAGCCATGAGCAGCGATTT
TACACCTTCTCGCCCGTGCCCCCCAACACCCACTACACATACTACACAAC
ATACTGCGCACACAGAGAAGCACCGGAGTGGGGGGTGTTGCGAAAAAACA
AAAAAGTAAAACACTCCGCAAAAACCTGTGTTGCACGGTAGATGCGCATC
AGGCCCAACACGTTCGCCTTCTGCGCGCTTCACAATGCTATGGCAAGACT
ACGTCAAAACGTTGGCAGATTGGAGAGAAACATCTATTTAAAACAAAACG
TAAAAACGCCGCAAAAGTCCACGTTGAGCTCGTGCAGCGTTGGTGTCCTG
ACTACACTGCCCGTGCTGTGCAACTTGCTCCAACTGCCGAAGGCATCACC
ACAGTCCCCCCATGTCGCCACACCATCATCCGAAATACAACTGATGGTAG
ATGGGAATTGTTTTCGCCCTCACAGCTCTCACACACCAAGATTGCCCATC
TGCAGTACATGTGCAGTAGTAGCACAAAAACCACTCAAATATCCACGAGC
TCTAGCCAGATTTACCGATCCCGCCCCACCATCACACGCATCCTTTTCCC
TGAAGGCACCGAGCCGCGTAGCCAGCCATGAGCAGCGATTTTACACCTTC
TCGCCCGTGCCCCCCAACACCCACTACACATACTACACAACATACTGCGC
ACACAGAGAAGCACCGGAGTGGGGGGTGTTGCGAAAAAACAAAAAAGTAA
AACACTCCGCAAAAACCTGTGTTGCACGGTAG
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