mRNA_H-paniculata_contig24952.6786.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24952.6786.1
Unique NamemRNA_H-paniculata_contig24952.6786.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24952.6786.1 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 3.190e-84
Identity = 236/506 (46.64%), Postives = 288/506 (56.92%), Query Frame = 1 
Query:    1 SFDHLKAELFRQKQLAEGLRKEVDQREEEKRQLLDLARTAKESEAALVRAAYERRA-RHQ--EELARNGRGAVGGKKLWRVPPPPD-DVADGSGNEPCGPFKGRANEIYDRIDNSY----ENPSDWTVEDRLVLAGLRSKPSFSDEKAA----IDSSR-RSEEIGGDSTFRERSRGARAWSSQGLGNYNSTSDADREARRSLRYRDLSSPGGIRASSRYVFPDGSVRRQL----LEVGSGDTIGGSENRGVANSNTGVPMPLIGTSRMKSADLSSDFGLKAVHPGGADDTSRPIHNDAGREDISGRRRALKRGGGAYRGPGAAPXXXXXXGGRPPRAYVPFLNLPKLGITEGSRGWCGGSSWDHDREGA--------VASGNVGNTSHRRRRGRPLAGVGGVLVSAGRAMLTGPSRPGTDASLSCWSSCSSRACCEVDGKG--RRRCHRRGHEHHG-------YGDGEISDEGNSIESGSTDVEFLRRRAESKLRSLERREAADAA 1416
            S + L+ EL++QKQL E LR EV Q+E EKR+L+D+AR AKESEAA +RAAYERRA +H   +EL   G GA G  +LWRVPPPP  + A+G G  P    + RA   +    N+Y    +  +D T EDRL+LAGLR     SD   A     D+ R R +++GGDSTFRE+  GARAWSS  + N   + D     RR L Y  +S PGGIRA SRYVFPDGSVRR+L     E G GD                VPMPL+GTSR+ SADLS   G+ ++  GG       +   + R   +GR  +    GG +RGPGAAP       GRPPRA+VPFLNLP             G     D +G+        V S  V   S  +RRGRPLAG+GGVLVS GRAMLTGP RPGT A+         R      G G  RRR  R+     G        GD E SD+  S+ SGSTDVEFLRRRAE+KL+SL+RREAA+ A
Sbjct:  947 SIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGGAEG-NELWRVPPPPSTEGAEGEGRTPSPSARRRAESNF-AAKNAYVANRKFDTDETAEDRLLLAGLRR---LSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGAVSN---SRDGRDSKRRPLDYGAVS-PGGIRAESRYVFPDGSVRRRLETPAAEGGVGDXXXXXXX---------VPMPLVGTSRIASADLSFALGIDSLRGGGNGAAGDDVEKASWRRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVSNGKANGNNSKEGRWASRDSDGSDSPYFLPPVYSAAVNGRS--KRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATS------PERPAYGETGSGHHRRRQSRQRARREGADLGSTSIGDEEFSDDCESVGSGSTDVEFLRRRAEAKLKSLDRREAAEKA 1426
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BLAST of mRNA_H-paniculata_contig24952.6786.1 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 1.090e-80
Identity = 229/494 (46.36%), Postives = 279/494 (56.48%), Query Frame = 1 
Query:    1 SFDHLKAELFRQKQLAEGLRKEVDQREEEKRQLLDLARTAKESEAALVRAAYERRA-RHQ--EELARNGRGAVGGKKLWRVPPPPD-DVADGSGNEPCGPFKGRANEIYDRIDNSYENPS---DWTVEDRLVLAGLRSKPSFSDEKAAIDSSRRSEEI--GGDSTFRERSRGARAWSSQGLGNYNSTSDADREARRSLRYRDLSSPGGIRASSRYVFPDGSVRRQLLEVGSGDTIGGSENRGVANSNTGVPMPLIGTSRMKSADLSSDFGLKAVHPGGADDTSRPIHNDAGREDISGRRRALKRGGGAYRGPGAAPXXXXXXGGRPPRAYVPFLNLPKL-----GITEGSRGWCGGSSWDHDREG---AVASGNVGNTSHRRRRGRPLAGVGGVLVSAGRAMLTGPSRPGTDASLSCWSSCSSRACCEVDG------KGRRRCHRRGHEHHGY--GDGEISDEGNSIESGSTDVEFLRRRAESKLRSLERREAA 1407
            S + L+ EL++QKQL E LR EV Q+E EKR+L+D+AR AKESEAA +RAAYERRA +H   +EL   G GA  G +LWRVPPPP  +  +G G  P    + RA       +    N     D T EDRL+LAGLR      D   A      ++ +  GGDSTFRE+  GA AWSS   G  +S  D      R L Y  +S PGGIRA SRYVFPDGSVR++L      +T       G       VPMPL+GTSR+ SADLS   G+ ++  GG+      +   +GR   +GR  +    GG +RGPGAAP       GRPPRA+VPFLNLP L     G T   R W    S   D       V S  V   S  +RRGRPLAG+GGVLVS GRAMLTGP RPGT A+     S    A  E         + RRR  R G +      GD E SD+ +S+ SGSTDVEFLRRRAE+KL+SL+R+EAA
Sbjct:  976 SIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAG-GAAEGNELWRVPPPPAVEGVEGEGRTPSPSDRRRAESTRAAKNACVANRKLDMDETAEDRLLLAGLRR---LGDGNRAPGGGCDTDRLRNGGDSTFREQVPGALAWSS---GAASSGRDGRDSKGRPLDYGAVS-PGGIRAESRYVFPDGSVRQRL------ETPAAEGGVGXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGGGSGAAGDDVEKASGRRRSTGRTGSRGNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVLNGKASGNTSKERRWASRGSDGSDSPSFLPPVYSAAVNGRS--KRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGAT-----SPERPAYGEAGSVHHRRRQSRRRARREGVDRDSISIGDEEFSDDCDSVGSGSTDVEFLRRRAEAKLQSLDRQEAA 1448
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24952.6786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV6_ECTSI3.190e-8446.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL2_9PHAE1.090e-8046.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24952contigH-paniculata_contig24952:298..2352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002630.1
Exons3
Model size1420
Cds size1419
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24952.6786.1prot_H-paniculata_contig24952.6786.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24952 298..2351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.6332712-CDS-H-paniculata_contig24952:297..3931622929731.6332712-CDS-H-paniculata_contig24952:297..393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24952 298..393 +
1691480986.842768-CDS-H-paniculata_contig24952:297..3931691480986.842768-CDS-H-paniculata_contig24952:297..393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24952 298..393 +
1622929731.6442723-CDS-H-paniculata_contig24952:707..10561622929731.6442723-CDS-H-paniculata_contig24952:707..1056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24952 708..1056 +
1691480986.8543446-CDS-H-paniculata_contig24952:707..10561691480986.8543446-CDS-H-paniculata_contig24952:707..1056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24952 708..1056 +
1622929731.654841-CDS-H-paniculata_contig24952:1377..23511622929731.654841-CDS-H-paniculata_contig24952:1377..2351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24952 1378..2351 +
1691480986.8637502-CDS-H-paniculata_contig24952:1377..23511691480986.8637502-CDS-H-paniculata_contig24952:1377..2351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24952 1378..2351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24952.6786.1

>prot_H-paniculata_contig24952.6786.1 ID=prot_H-paniculata_contig24952.6786.1|Name=mRNA_H-paniculata_contig24952.6786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=473bp
SFDHLKAELFRQKQLAEGLRKEVDQREEEKRQLLDLARTAKESEAALVRA
AYERRARHQEELARNGRGAVGGKKLWRVPPPPDDVADGSGNEPCGPFKGR
ANEIYDRIDNSYENPSDWTVEDRLVLAGLRSKPSFSDEKAAIDSSRRSEE
IGGDSTFRERSRGARAWSSQGLGNYNSTSDADREARRSLRYRDLSSPGGI
RASSRYVFPDGSVRRQLLEVGSGDTIGGSENRGVANSNTGVPMPLIGTSR
MKSADLSSDFGLKAVHPGGADDTSRPIHNDAGREDISGRRRALKRGGGAY
RGPGAAPGASFAPGGRPPRAYVPFLNLPKLGITEGSRGWCGGSSWDHDRE
GAVASGNVGNTSHRRRRGRPLAGVGGVLVSAGRAMLTGPSRPGTDASLSC
WSSCSSRACCEVDGKGRRRCHRRGHEHHGYGDGEISDEGNSIESGSTDVE
FLRRRAESKLRSLERREAADAAP
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mRNA from alignment at H-paniculata_contig24952:298..2352+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24952.6786.1 ID=mRNA_H-paniculata_contig24952.6786.1|Name=mRNA_H-paniculata_contig24952.6786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2055bp|location=Sequence derived from alignment at H-paniculata_contig24952:298..2352+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTTGACCACCTCAAGGCAGAGCTGTTCAGACAGAAGCAGCTGGCAGA
AGGATTAAGGAAGGAGGTCGACCAGCGTGAGGAAGAAAAGCGACAGGTAA
GACCGGAGATTCGAACAAGGTAATCCTGCTGCACCGCCAGACGAAGCCTA
ATGATTTTGATAGTTATCATCTTCACCAACGTACTGTTCTGTGAACACCA
TCATCAGACCCTGACTACCGCCAAGCCTTTATGTCATCCTTTTCATCCCT
TCCAAGCTGATCGAGGAATACAAGACTCCTCTCTTCCCTATCTATGCTGC
CCAATAGGACCTCGATCCTATTTGCCCCTCCCCCTTGCCTCACTCGATCC
ACACTCCCCGGCCGCCCACGTCCCCGTTCACCAATCCGCCCTGTGCGTTG
TTGCCATTAGCTCCTTGACCTTGCAAGGACCGCTAAGGAATCAGAAGCTG
CCCTCGTTCGGGCAGCATATGAGCGGCGGGCACGTCACCAGGAAGAGTTA
GCTAGAAACGGACGGGGGGCAGTGGGGGGGAAAAAGCTTTGGAGGGTACC
GCCCCCTCCTGACGATGTTGCTGACGGCAGCGGAAACGAGCCTTGCGGTC
CTTTTAAGGGGCGGGCAAATGAAATCTATGATAGAATTGATAACAGTTAT
GAAAATCCTAGCGATTGGACGGTAGAAGACCGCTTGGTGCTAGCTGGATT
GCGCAGCAAACCGAGTTTCAGCGATGAAAAAGCTGCGATAGATTCTTCCA
GGAGATCGGGTATGAGGAGATCTTACATTTTCTTCATGGGGGTACTGAGA
ATGTGTTTGAGCTCTATGATACAACGATGTCCGAGTTCCTGCTCAAATGA
AATGCGGAAGTTGTTGTGAACACCAAAAAAATCGGGAGAATCTTTTTTTA
AGTACCAAGTACGTTTGGAAATCGACGCAAAGGTTGGTTCGGGTAACTCA
ATGCCCTCCGCCCCCATTTGATTGCCTGCATGAAACCACAAAAAACACCG
CCCGTGTTGAATTTCTTCTGTACATGTATACTCACCGAAAAATGCGTTCC
ACGCCACTTGACGCTCGCTCCGTAATAAAGAGGAAATCGGCGGTGACTCC
ACTTTTCGAGAACGATCGCGCGGTGCCAGGGCGTGGAGCAGCCAAGGGCT
CGGCAATTATAATAGCACTAGCGACGCTGATAGAGAAGCAAGGAGATCGT
TGCGCTATCGCGACCTATCATCCCCCGGCGGAATTCGTGCCTCGAGTCGT
TATGTATTTCCGGACGGGTCTGTCCGCCGGCAGCTATTGGAAGTCGGGAG
CGGAGACACCATTGGTGGTTCCGAGAACCGTGGTGTCGCCAATAGCAACA
CTGGCGTTCCCATGCCGCTAATCGGTACGTCGAGAATGAAATCGGCCGAC
CTCTCGTCGGACTTTGGACTCAAAGCGGTGCATCCTGGTGGCGCTGACGA
TACAAGTAGACCTATCCACAACGATGCTGGTCGAGAAGATATTTCGGGGA
GGAGGAGGGCGCTTAAGCGTGGTGGAGGCGCCTACCGGGGACCTGGTGCC
GCTCCTGGTGCCTCATTCGCCCCGGGTGGTAGACCACCACGCGCGTATGT
CCCTTTTCTTAACCTTCCGAAGCTCGGGATCACCGAAGGAAGTCGTGGTT
GGTGTGGTGGTAGTTCTTGGGATCATGATCGGGAAGGCGCTGTCGCGAGT
GGTAACGTTGGCAATACCTCCCACAGGCGACGAAGAGGGCGGCCTTTGGC
AGGGGTGGGCGGTGTTCTTGTCTCCGCAGGAAGAGCCATGCTAACCGGTC
CGAGCCGGCCCGGAACAGACGCATCATTGTCGTGCTGGTCGTCGTGTTCG
TCACGAGCGTGCTGTGAAGTCGATGGCAAGGGTAGGAGACGATGCCACCG
CCGCGGCCACGAGCATCACGGCTATGGGGATGGAGAAATATCTGACGAAG
GCAATAGTATTGAATCAGGCTCGACGGATGTGGAGTTTTTGAGGCGGCGT
GCAGAATCAAAGTTGAGATCGCTCGAGCGGCGTGAGGCCGCAGACGCAGC
GCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24952:298..2352+

>mRNA_H-paniculata_contig24952.6786.1 ID=mRNA_H-paniculata_contig24952.6786.1|Name=mRNA_H-paniculata_contig24952.6786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2838bp|location=Sequence derived from alignment at H-paniculata_contig24952:298..2352+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTTGACCACCTCAAGGCAGAGCTGTTCAGACAGAAGCAGCTGGCAGA
AGGATTAAGGAAGGAGGTCGACCAGCGTGAGGAAGAAAAGCGACAGTCTT
TTGACCACCTCAAGGCAGAGCTGTTCAGACAGAAGCAGCTGGCAGAAGGA
TTAAGGAAGGAGGTCGACCAGCGTGAGGAAGAAAAGCGACAGCTCCTTGA
CCTTGCAAGGACCGCTAAGGAATCAGAAGCTGCCCTCGTTCGGGCAGCAT
ATGAGCGGCGGGCACGTCACCAGGAAGAGTTAGCTAGAAACGGACGGGGG
GCAGTGGGGGGGAAAAAGCTTTGGAGGGTACCGCCCCCTCCTGACGATGT
TGCTGACGGCAGCGGAAACGAGCCTTGCGGTCCTTTTAAGGGGCGGGCAA
ATGAAATCTATGATAGAATTGATAACAGTTATGAAAATCCTAGCGATTGG
ACGGTAGAAGACCGCTTGGTGCTAGCTGGATTGCGCAGCAAACCGAGTTT
CAGCGATGAAAAAGCTGCGATAGATTCTTCCAGGAGATCGGCTCCTTGAC
CTTGCAAGGACCGCTAAGGAATCAGAAGCTGCCCTCGTTCGGGCAGCATA
TGAGCGGCGGGCACGTCACCAGGAAGAGTTAGCTAGAAACGGACGGGGGG
CAGTGGGGGGGAAAAAGCTTTGGAGGGTACCGCCCCCTCCTGACGATGTT
GCTGACGGCAGCGGAAACGAGCCTTGCGGTCCTTTTAAGGGGCGGGCAAA
TGAAATCTATGATAGAATTGATAACAGTTATGAAAATCCTAGCGATTGGA
CGGTAGAAGACCGCTTGGTGCTAGCTGGATTGCGCAGCAAACCGAGTTTC
AGCGATGAAAAAGCTGCGATAGATTCTTCCAGGAGATCGGAGGAAATCGG
CGGTGACTCCACTTTTCGAGAACGATCGCGCGGTGCCAGGGCGTGGAGCA
GCCAAGGGCTCGGCAATTATAATAGCACTAGCGACGCTGATAGAGAAGCA
AGGAGATCGTTGCGCTATCGCGACCTATCATCCCCCGGCGGAATTCGTGC
CTCGAGTCGTTATGTATTTCCGGACGGGTCTGTCCGCCGGCAGCTATTGG
AAGTCGGGAGCGGAGACACCATTGGTGGTTCCGAGAACCGTGGTGTCGCC
AATAGCAACACTGGCGTTCCCATGCCGCTAATCGGTACGTCGAGAATGAA
ATCGGCCGACCTCTCGTCGGACTTTGGACTCAAAGCGGTGCATCCTGGTG
GCGCTGACGATACAAGTAGACCTATCCACAACGATGCTGGTCGAGAAGAT
ATTTCGGGGAGGAGGAGGGCGCTTAAGCGTGGTGGAGGCGCCTACCGGGG
ACCTGGTGCCGCTCCTGGTGCCTCATTCGCCCCGGGTGGTAGACCACCAC
GCGCGTATGTCCCTTTTCTTAACCTTCCGAAGCTCGGGATCACCGAAGGA
AGTCGTGGTTGGTGTGGTGGTAGTTCTTGGGATCATGATCGGGAAGGCGC
TGTCGCGAGTGGTAACGTTGGCAATACCTCCCACAGGCGACGAAGAGGGC
GGCCTTTGGCAGGGGTGGGCGGTGTTCTTGTCTCCGCAGGAAGAGCCATG
CTAACCGGTCCGAGCCGGCCCGGAACAGACGCATCATTGTCGTGCTGGTC
GTCGTGTTCGTCACGAGCGTGCTGTGAAGTCGATGGCAAGGGTAGGAGAC
GATGCCACCGCCGCGGCCACGAGCATCACGGCTATGGGGATGGAGAAATA
TCTGACGAAGGCAATAGTATTGAATCAGGCTCGACGGATGTGGAGTTTTT
GAGGCGGCGTGCAGAATCAAAGTTGAGATCGCTCGAGCGGCGTGAGGCCG
CAGACGCAGCGCCAAGGAAATCGGCGGTGACTCCACTTTTCGAGAACGAT
CGCGCGGTGCCAGGGCGTGGAGCAGCCAAGGGCTCGGCAATTATAATAGC
ACTAGCGACGCTGATAGAGAAGCAAGGAGATCGTTGCGCTATCGCGACCT
ATCATCCCCCGGCGGAATTCGTGCCTCGAGTCGTTATGTATTTCCGGACG
GGTCTGTCCGCCGGCAGCTATTGGAAGTCGGGAGCGGAGACACCATTGGT
GGTTCCGAGAACCGTGGTGTCGCCAATAGCAACACTGGCGTTCCCATGCC
GCTAATCGGTACGTCGAGAATGAAATCGGCCGACCTCTCGTCGGACTTTG
GACTCAAAGCGGTGCATCCTGGTGGCGCTGACGATACAAGTAGACCTATC
CACAACGATGCTGGTCGAGAAGATATTTCGGGGAGGAGGAGGGCGCTTAA
GCGTGGTGGAGGCGCCTACCGGGGACCTGGTGCCGCTCCTGGTGCCTCAT
TCGCCCCGGGTGGTAGACCACCACGCGCGTATGTCCCTTTTCTTAACCTT
CCGAAGCTCGGGATCACCGAAGGAAGTCGTGGTTGGTGTGGTGGTAGTTC
TTGGGATCATGATCGGGAAGGCGCTGTCGCGAGTGGTAACGTTGGCAATA
CCTCCCACAGGCGACGAAGAGGGCGGCCTTTGGCAGGGGTGGGCGGTGTT
CTTGTCTCCGCAGGAAGAGCCATGCTAACCGGTCCGAGCCGGCCCGGAAC
AGACGCATCATTGTCGTGCTGGTCGTCGTGTTCGTCACGAGCGTGCTGTG
AAGTCGATGGCAAGGGTAGGAGACGATGCCACCGCCGCGGCCACGAGCAT
CACGGCTATGGGGATGGAGAAATATCTGACGAAGGCAATAGTATTGAATC
AGGCTCGACGGATGTGGAGTTTTTGAGGCGGCGTGCAGAATCAAAGTTGA
GATCGCTCGAGCGGCGTGAGGCCGCAGACGCAGCGCCA
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