mRNA_H-paniculata_contig24925.6775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24925.6775.1
Unique NamemRNA_H-paniculata_contig24925.6775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24925.6775.1 vs. uniprot
Match: A0A6H5K892_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K892_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.180e-40
Identity = 147/340 (43.24%), Postives = 180/340 (52.94%), Query Frame = 1 
Query:   31 GGWTGSGFGNGSFMLESIVQISHAGLSDNVRRESLLHELSKRSPSQPTLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLCCHCYASLLDRIDEDTRLAERDALAYRDFMQLLD-TIADADNDDVTVPPQASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQGGPRPAARGTTEGSVSSTDGENNAKGETVDK--DPAAAAVQIKGDGGSGGRGSLEEGETPV-----------AGGEVLSPLADALWVAHRTSAQLRKELSLVETQREALRQRGSKAWTELAELAHARGVLGDECRELLQDSKLVGRRCVLILE 1008
            GGWTGSGFG GS ML+SIVQISHAGLSDNVRRESLL+++S+R   +    A                                               PTLCCHCYASLL++IDED+RLA+R+ALAYRDF++ L   I   DN   +  P A G          XXXXXXXXXXXXXXXXXXXXX +G    AA  T        +     +G ++     PA++A+       S G  +++                 A G   SP A AL +A  TS QLR+EL  +ETQR AL  RGS+AW  L+ELA+ARGVL DECRELLQ S+ V      + E
Sbjct:  171 GGWTGSGFGAGSSMLDSIVQISHAGLSDNVRRESLLYDMSQRPARR--FRAGEQKLPASKDGASAAQVDGGDDERGGRLSQRQPADSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVETLSGIIISEDNGLESAGPTAPGRRRKAEGFPAXXXXXXXXXXXXXXXXXXXXXGEG----AADSTRREGSDRQEHARKERGRSLSSGTSPASSALAP-----SPGTVNVQXXXXXXXXXXXXXXXGSAAGPAASPFAQALRMAQETSVQLRRELRSLETQRGALCARGSEAWAALSELAYARGVLEDECRELLQASREVAENAAHLSE 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24925.6775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K892_9PHAE2.180e-4043.24APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24925contigH-paniculata_contig24925:1269..3569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAtg6/Beclin
Ec32 orthologEc-07_006420.1
Exons3
Model size1011
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24925.6775.1prot_H-paniculata_contig24925.6775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24925 1269..3569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.0472243-CDS-H-paniculata_contig24925:1268..17651622929730.0472243-CDS-H-paniculata_contig24925:1268..1765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24925 1269..1765 -
1691480986.2248511-CDS-H-paniculata_contig24925:1268..17651691480986.2248511-CDS-H-paniculata_contig24925:1268..1765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24925 1269..1765 -
1622929730.0589194-CDS-H-paniculata_contig24925:1978..22441622929730.0589194-CDS-H-paniculata_contig24925:1978..2244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24925 1979..2244 -
1691480986.23327-CDS-H-paniculata_contig24925:1978..22441691480986.23327-CDS-H-paniculata_contig24925:1978..2244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24925 1979..2244 -
1622929730.0719922-CDS-H-paniculata_contig24925:3321..35691622929730.0719922-CDS-H-paniculata_contig24925:3321..3569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24925 3322..3569 -
1691480986.2406492-CDS-H-paniculata_contig24925:3321..35691691480986.2406492-CDS-H-paniculata_contig24925:3321..3569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24925 3322..3569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24925.6775.1

>prot_H-paniculata_contig24925.6775.1 ID=prot_H-paniculata_contig24925.6775.1|Name=mRNA_H-paniculata_contig24925.6775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
MTRSGYGSGLGGWTGSGFGNGSFMLESIVQISHAGLSDNVRRESLLHELS
KRSPSQPTLAAAAAAQEGNTANATESGGGKIDPQEHYGKEQEEEKDDGDD
DDDDDDDDPTLCCHCYASLLDRIDEDTRLAERDALAYRDFMQLLDTIADA
DNDDVTVPPQASGAAPSSRREVTASASAAAAAADVAAAAATVAAEQGGPR
PAARGTTEGSVSSTDGENNAKGETVDKDPAAAAVQIKGDGGSGGRGSLEE
GETPVAGGEVLSPLADALWVAHRTSAQLRKELSLVETQREALRQRGSKAW
TELAELAHARGVLGDECRELLQDSKLVGRRCVLILE*
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mRNA from alignment at H-paniculata_contig24925:1269..3569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24925.6775.1 ID=mRNA_H-paniculata_contig24925.6775.1|Name=mRNA_H-paniculata_contig24925.6775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at H-paniculata_contig24925:1269..3569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGGTCGGGCTATGGGTCTGGTTTGGGCGGTTGGACCGGGTCCGG
TTTTGGGAACGGTTCTTTCATGTTGGAGAGTATCGTACAGATTTCGCACG
CTGGTCTCAGCGACAACGTTCGGCGGGAGTCGCTCTTGCATGAGCTGTCG
AAAAGATCCCCCAGCCAGCCGACGCTTGCTGCTGCTGCTGCTGCGCAAGA
GGGAAATACCGCCAATGCGACAGAGTCAGGAGGGGGTAAGATTGACCCGT
TTATCGCCGGTTCTGGTCTGCAGTAGTCCTTGTCCATTCTCTACTTCATA
AACAGGGGTAAATGGCGACGGTAATGCACACGATTGAGATACGCGGATAC
GGAGCCGCCGCTGTCCAGACAGGAGACAGGACAGTGCAGAATAGACCCAG
CGCACGCAGGCTGTTGGCATGATACCGTCCTGAACTTTCCAATCCGAGGG
CCAGAATCACTCTCGTATGACTTCCGTCCTGAGCTAACACGAAGTATTTT
TACTCGGTATGCGTTCATCTCCTCAATTCATACGTATTGAAGTGATTGTC
ATCTCCCCTAAATAGTCACCGATTCTTAGAGTACAATCCTACAAACCGCA
GAGCACATTCGTCACATAGTGCGTCAGTAGCCTCCTCTCACCTACTGGTA
CCCGCTGTGGCCTTCTCAGATCCAGTTCGCGGGACGCCGTTACAATGTGC
GTGATCCTCAGCCGACAAGAATGCTGCAACGCTCGATGTTTGTTGTCTGT
ATTTGTATTTTGCTTTCCGTCTCGAGACAGTACCGAGTCTAAAAAGGGTG
AGGGTGTTCGTCAACTCTTTCTGACGACAGACATTGGGTTTCCTTTTTCG
GGGTGATATTCATGGTCAAACGGCCGCTGTAAAGTTGTGCTTAATTCTGT
GGAATATTATGCTCCTTTCTGCAGGCAATATTATTACAAGACAAGATCCT
TGCAATGTAAACCTAGTTTAAGTTACCCTTATTCCTAGAGTATATTGACC
CCCCTCCCCTTCCCTAGATTGTTCAGTTTTTAACGGATAAGTAATAGAGC
ATCTTCAAGATGCTGAGCATAGCTCTATTTCACAAGACTCCGTATAGTAT
CCATCCCAAACCGTATTCGCATGGTGTAGAAGGGACGCTCCTGCTGGCGA
AGCTTTCCCCAGCAATTGGCGCATGTAGTGCCCCCCGTGCCCTGCCTTTG
AAACCTAGCTGTTGACGAAACGGATACCTATCTTGGTTGCCTTATTTTAT
TCCGTGTTTTTTGTCGCCTCGTGGGTTTTTGTTTTTTCTTCGCTATGCAG
GAGGTGTTCACGGCGGCAACAACAGTCAAGAACATTACGGTAAAGAGCAG
GAGGAAGAAAAAGACGATGGCGACGACGACGACGACGACGACGACGACGA
TCCCACGCTCTGCTGCCACTGCTACGCATCACTGCTGGATCGGATAGACG
AGGACACCCGCTTGGCCGAGCGGGACGCCTTGGCCTATCGGGACTTCATG
CAGCTCTTGGACACCATCGCGGACGCGGATAATGACGATGTCACTGTGCC
CCCCCAGGCCTCCGGCGCCGCCCCCAGCAGCCGTCGTGAGGGTGTAGTCC
AGACGAAAACAACCGCCGTAGTGACTACAAAAGAGTCCCACAGGAAGTCG
TTGGCTGGGGAGTCGCCAGTATCTGCTTCGTTGCCCGGTGCACATGGGGA
AGCCCACATTGGCGGCGGTGATGGTGATGGTGGTGATGGTGTCTGGCGAC
AGGAAGAAGCCGAGCAGCAGGTCGATAGTAGTACAAGCGAAAAGGCGTTG
GTAGTAACCGCCTCCGCCTCCGCCGCCGCAGCAGCAGCCGATGTCGCTGC
TGCTGCTGCTACTGTTGCTGCTGAACAGGGTGGCCCTCGACCTGCTGCGA
GAGGGACGACGGAAGGCTCTGTCAGCAGCACCGACGGTGAAAATAACGCT
AAAGGTGAAACAGTCGACAAGGATCCCGCGGCGGCAGCGGTTCAGATCAA
AGGAGACGGCGGCAGTGGGGGGCGCGGGAGTCTTGAAGAAGGAGAGACGC
CTGTTGCGGGGGGTGAGGTGTTGTCACCACTGGCAGACGCTTTGTGGGTA
GCCCATCGAACCAGCGCTCAGCTGAGGAAGGAATTGAGCCTGGTGGAAAC
CCAGAGGGAGGCATTGCGCCAGCGGGGGTCGAAGGCGTGGACAGAGCTGG
CAGAGCTGGCTCATGCTCGAGGGGTGCTCGGGGATGAGTGCAGGGAGCTG
CTGCAGGATTCGAAGCTGGTGGGTAGGCGCTGCGTTTTGATTCTAGAGTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig24925:1269..3569-

>mRNA_H-paniculata_contig24925.6775.1 ID=mRNA_H-paniculata_contig24925.6775.1|Name=mRNA_H-paniculata_contig24925.6775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig24925:1269..3569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGGTCGGGCTATGGGTCTGGTTTGGGCGGTTGGACCGGGTCCGG
TTTTGGGAACGGTTCTTTCATGTTGGAGAGTATCGTACAGATTTCGCACG
CTGGTCTCAGCGACAACGTTCGGCGGGAGTCGCTCTTGCATGAGCTGTCG
AAAAGATCCCCCAGCCAGCCGACGCTTGCTGCTGCTGCTGCTGCGCAAGA
GGGAAATACCGCCAATGCGACAGAGTCAGGAGGGGGTAAGATTGACCCAT
GACCAGGTCGGGCTATGGGTCTGGTTTGGGCGGTTGGACCGGGTCCGGTT
TTGGGAACGGTTCTTTCATGTTGGAGAGTATCGTACAGATTTCGCACGCT
GGTCTCAGCGACAACGTTCGGCGGGAGTCGCTCTTGCATGAGCTGTCGAA
AAGATCCCCCAGCCAGCCGACGCTTGCTGCTGCTGCTGCTGCGCAAGAGG
GAAATACCGCCAATGCGACAGAGTCAGGAGGGGGTAAGATTGACCCTCAA
GAACATTACGGTAAAGAGCAGGAGGAAGAAAAAGACGATGGCGACGACGA
CGACGACGACGACGACGACGATCCCACGCTCTGCTGCCACTGCTACGCAT
CACTGCTGGATCGGATAGACGAGGACACCCGCTTGGCCGAGCGGGACGCC
TTGGCCTATCGGGACTTCATGCAGCTCTTGGACACCATCGCGGACGCGGA
TAATGACGATGTCACTGTGCCCCCCCAGGCCTCCGGCGCCGCCCCCAGCA
GCCGTCGTGAGGTCAAGAACATTACGGTAAAGAGCAGGAGGAAGAAAAAG
ACGATGGCGACGACGACGACGACGACGACGACGACGATCCCACGCTCTGC
TGCCACTGCTACGCATCACTGCTGGATCGGATAGACGAGGACACCCGCTT
GGCCGAGCGGGACGCCTTGGCCTATCGGGACTTCATGCAGCTCTTGGACA
CCATCGCGGACGCGGATAATGACGATGTCACTGTGCCCCCCCAGGCCTCC
GGCGCCGCCCCCAGCAGCCGTCGTGAGGTAACCGCCTCCGCCTCCGCCGC
CGCAGCAGCAGCCGATGTCGCTGCTGCTGCTGCTACTGTTGCTGCTGAAC
AGGGTGGCCCTCGACCTGCTGCGAGAGGGACGACGGAAGGCTCTGTCAGC
AGCACCGACGGTGAAAATAACGCTAAAGGTGAAACAGTCGACAAGGATCC
CGCGGCGGCAGCGGTTCAGATCAAAGGAGACGGCGGCAGTGGGGGGCGCG
GGAGTCTTGAAGAAGGAGAGACGCCTGTTGCGGGGGGTGAGGTGTTGTCA
CCACTGGCAGACGCTTTGTGGGTAGCCCATCGAACCAGCGCTCAGCTGAG
GAAGGAATTGAGCCTGGTGGAAACCCAGAGGGAGGCATTGCGCCAGCGGG
GGTCGAAGGCGTGGACAGAGCTGGCAGAGCTGGCTCATGCTCGAGGGGTG
CTCGGGGATGAGTGCAGGGAGCTGCTGCAGGATTCGAAGCTGGTGGGTAG
GCGCTGCGTTTTGATTCTAGAGTAATAACCGCCTCCGCCTCCGCCGCCGC
AGCAGCAGCCGATGTCGCTGCTGCTGCTGCTACTGTTGCTGCTGAACAGG
GTGGCCCTCGACCTGCTGCGAGAGGGACGACGGAAGGCTCTGTCAGCAGC
ACCGACGGTGAAAATAACGCTAAAGGTGAAACAGTCGACAAGGATCCCGC
GGCGGCAGCGGTTCAGATCAAAGGAGACGGCGGCAGTGGGGGGCGCGGGA
GTCTTGAAGAAGGAGAGACGCCTGTTGCGGGGGGTGAGGTGTTGTCACCA
CTGGCAGACGCTTTGTGGGTAGCCCATCGAACCAGCGCTCAGCTGAGGAA
GGAATTGAGCCTGGTGGAAACCCAGAGGGAGGCATTGCGCCAGCGGGGGT
CGAAGGCGTGGACAGAGCTGGCAGAGCTGGCTCATGCTCGAGGGGTGCTC
GGGGATGAGTGCAGGGAGCTGCTGCAGGATTCGAAGCTGGTGGGTAGGCG
CTGCGTTTTGATTCTAGAGTAA
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