mRNA_H-paniculata_contig24923.6774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAF 168
I LA+NPLSS +KH+D +H L L I H+SS +QH D+LTK+LPR+ F
Sbjct: 309 IALAENPLSSCNSKHIDVSHHFLRNLTEEGVLEIRHVSSEVQHADILTKALPRDPF 364
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 1.410e-7 Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPR 159
+ L +NPLSSAR+KH+D R H EL ++ +E++S+ QH D+LTK+L R
Sbjct: 71 MTLVQNPLSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCR 123
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A453SWP2_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SWP2_AEGTS) HSP 1 Score: 55.5 bits (132), Expect = 1.870e-7 Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFL 171
I L KNP+ R+KH+D R H + V K+ +EH+S+G Q D+LTK LPR F+
Sbjct: 456 ISLCKNPVLHDRSKHIDIRYHFIRDCVETGKITVEHVSTGDQLADLLTKPLPRVKFI 512
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6H5K2F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F8_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 2.540e-7 Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFLFY 177
+ L +NP SSAR+KH++ R H EL K+ EH+ +G QH D+LTK L RE ++
Sbjct: 344 LALIENPFSSARSKHINVRFHFIRELFKSCKITAEHVPTGEQHADMLTKVLGREKLEYH 402
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A438FQU2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FQU2_VITVI) HSP 1 Score: 53.1 bits (126), Expect = 2.900e-7 Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFLF 174
+ LA NP+ A +KH++ H CE VA + +++EH+S+ +Q VD+ TK + F F
Sbjct: 49 LALAFNPIFHAHSKHIEVDYHFVCEKVAHRDIILEHISTSIQPVDIFTKGHTVDRFCF 106
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A392MZE7_9FABA (Copia protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MZE7_9FABA) HSP 1 Score: 52.4 bits (124), Expect = 4.050e-7 Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFL 171
I LAKNP+S ++KH++ R H + V + KL +E+ S+ Q D+LTK++ R+ FL
Sbjct: 50 INLAKNPISHGKSKHIETRFHFLRDQVNKGKLKLEYCSTEDQQADILTKAVKRDQFL 106
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A1Y1LU08_PHOPY (Uncharacterized protein (Fragment) n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LU08_PHOPY) HSP 1 Score: 53.9 bits (128), Expect = 5.430e-7 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPRE 162
I L+KN + ARTKH+D ++H + E VA+K++ I +++ D+LTKSLPRE
Sbjct: 200 IDLSKNSVFHARTKHIDIQHHFTREAVAQKEIEIHKINTEEMVADILTKSLPRE 253
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A0B2QU08_GLYSO (Copia protein (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2QU08_GLYSO) HSP 1 Score: 50.4 bits (119), Expect = 6.320e-7 Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSL 153
I LAKNP+S R+KH++ + H + V+++K+ ++H + LQ D+LTK L
Sbjct: 11 INLAKNPVSHGRSKHIETKYHFLRDQVSKEKIKLQHCGTDLQVADILTKPL 61
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A5A7SGW5_CUCME (Copia protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SGW5_CUCME) HSP 1 Score: 53.9 bits (128), Expect = 6.410e-7 Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAF 168
I ++KNP+ +RTKH+D ++H EL+ + +V++H+ S LQ VD+ TK L +F
Sbjct: 104 IDISKNPVQHSRTKHIDIKHHFIRELIEGEVVVLKHVRSSLQLVDIFTKPLDVSSF 159
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6V7P508_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7P508_ANACO) HSP 1 Score: 53.9 bits (128), Expect = 6.600e-7 Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFLF 174
IQ+A NP+ RT+H++ H E+V + + + H+S+ LQ VDVLTKSLPR+ F
Sbjct: 677 IQIATNPVYHERTRHIEVDCHYIREVVDTRVISLPHVSTSLQIVDVLTKSLPRQRHQF 734 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24923.6774.1 >prot_H-paniculata_contig24923.6774.1 ID=prot_H-paniculata_contig24923.6774.1|Name=mRNA_H-paniculata_contig24923.6774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSback to top mRNA from alignment at H-paniculata_contig24923:2649..2825- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24923.6774.1 ID=mRNA_H-paniculata_contig24923.6774.1|Name=mRNA_H-paniculata_contig24923.6774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig24923:2649..2825- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24923:2649..2825- >mRNA_H-paniculata_contig24923.6774.1 ID=mRNA_H-paniculata_contig24923.6774.1|Name=mRNA_H-paniculata_contig24923.6774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig24923:2649..2825- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |