mRNA_H-paniculata_contig24923.6774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24923.6774.1
Unique NamemRNA_H-paniculata_contig24923.6774.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAF 168
            I LA+NPLSS  +KH+D  +H    L     L I H+SS +QH D+LTK+LPR+ F
Sbjct:  309 IALAENPLSSCNSKHIDVSHHFLRNLTEEGVLEIRHVSSEVQHADILTKALPRDPF 364          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.410e-7
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPR 159
            + L +NPLSSAR+KH+D R H   EL    ++ +E++S+  QH D+LTK+L R
Sbjct:   71 MTLVQNPLSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCR 123          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A453SWP2_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SWP2_AEGTS)

HSP 1 Score: 55.5 bits (132), Expect = 1.870e-7
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFL 171
            I L KNP+   R+KH+D R H   + V   K+ +EH+S+G Q  D+LTK LPR  F+
Sbjct:  456 ISLCKNPVLHDRSKHIDIRYHFIRDCVETGKITVEHVSTGDQLADLLTKPLPRVKFI 512          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6H5K2F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.540e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFLFY 177
            + L +NP SSAR+KH++ R H   EL    K+  EH+ +G QH D+LTK L RE   ++
Sbjct:  344 LALIENPFSSARSKHINVRFHFIRELFKSCKITAEHVPTGEQHADMLTKVLGREKLEYH 402          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A438FQU2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FQU2_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 2.900e-7
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFLF 174
            + LA NP+  A +KH++   H  CE VA + +++EH+S+ +Q VD+ TK    + F F
Sbjct:   49 LALAFNPIFHAHSKHIEVDYHFVCEKVAHRDIILEHISTSIQPVDIFTKGHTVDRFCF 106          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A392MZE7_9FABA (Copia protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MZE7_9FABA)

HSP 1 Score: 52.4 bits (124), Expect = 4.050e-7
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFL 171
            I LAKNP+S  ++KH++ R H   + V + KL +E+ S+  Q  D+LTK++ R+ FL
Sbjct:   50 INLAKNPISHGKSKHIETRFHFLRDQVNKGKLKLEYCSTEDQQADILTKAVKRDQFL 106          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A1Y1LU08_PHOPY (Uncharacterized protein (Fragment) n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LU08_PHOPY)

HSP 1 Score: 53.9 bits (128), Expect = 5.430e-7
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPRE 162
            I L+KN +  ARTKH+D ++H + E VA+K++ I  +++     D+LTKSLPRE
Sbjct:  200 IDLSKNSVFHARTKHIDIQHHFTREAVAQKEIEIHKINTEEMVADILTKSLPRE 253          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A0B2QU08_GLYSO (Copia protein (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2QU08_GLYSO)

HSP 1 Score: 50.4 bits (119), Expect = 6.320e-7
Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSL 153
            I LAKNP+S  R+KH++ + H   + V+++K+ ++H  + LQ  D+LTK L
Sbjct:   11 INLAKNPVSHGRSKHIETKYHFLRDQVSKEKIKLQHCGTDLQVADILTKPL 61          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A5A7SGW5_CUCME (Copia protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SGW5_CUCME)

HSP 1 Score: 53.9 bits (128), Expect = 6.410e-7
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAF 168
            I ++KNP+  +RTKH+D ++H   EL+  + +V++H+ S LQ VD+ TK L   +F
Sbjct:  104 IDISKNPVQHSRTKHIDIKHHFIRELIEGEVVVLKHVRSSLQLVDIFTKPLDVSSF 159          
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Match: A0A6V7P508_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7P508_ANACO)

HSP 1 Score: 53.9 bits (128), Expect = 6.600e-7
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKSLPREAFLF 174
            IQ+A NP+   RT+H++   H   E+V  + + + H+S+ LQ VDVLTKSLPR+   F
Sbjct:  677 IQIATNPVYHERTRHIEVDCHYIREVVDTRVISLPHVSTSLQIVDVLTKSLPRQRHQF 734          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24923.6774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGA6_9PHAE2.270e-950.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVG7_9PHAE1.410e-747.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A453SWP2_AEGTS1.870e-745.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2F8_9PHAE2.540e-744.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A438FQU2_VITVI2.900e-737.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A392MZE7_9FABA4.050e-742.11Copia protein (Fragment) n=1 Tax=Trifolium medium ... [more]
A0A1Y1LU08_PHOPY5.430e-746.30Uncharacterized protein (Fragment) n=2 Tax=Photinu... [more]
A0A0B2QU08_GLYSO6.320e-741.18Copia protein (Fragment) n=1 Tax=Glycine soja TaxI... [more]
A0A5A7SGW5_CUCME6.410e-741.07Copia protein n=1 Tax=Cucumis melo var. makuwa Tax... [more]
A0A6V7P508_ANACO6.600e-744.83Uncharacterized protein n=1 Tax=Ananas comosus var... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24923contigH-paniculata_contig24923:2649..2825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.010408-CDS-H-paniculata_contig24923:2648..28251622929730.010408-CDS-H-paniculata_contig24923:2648..2825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24923 2649..2825 -
1691480986.2166817-CDS-H-paniculata_contig24923:2648..28251691480986.2166817-CDS-H-paniculata_contig24923:2648..2825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24923 2649..2825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24923.6774.1prot_H-paniculata_contig24923.6774.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24923 2649..2825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24923.6774.1

>prot_H-paniculata_contig24923.6774.1 ID=prot_H-paniculata_contig24923.6774.1|Name=mRNA_H-paniculata_contig24923.6774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
IQLAKNPLSSARTKHVDARNHLSCELVARKKLVIEHLSSGLQHVDVLTKS
LPREAFLFY
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mRNA from alignment at H-paniculata_contig24923:2649..2825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24923.6774.1 ID=mRNA_H-paniculata_contig24923.6774.1|Name=mRNA_H-paniculata_contig24923.6774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig24923:2649..2825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAACTAGCTAAAAACCCTCTCAGTTCGGCGCGGACCAAACACGTTGA CGCGCGCAATCATTTGTCATGTGAGCTAGTAGCAAGGAAGAAGTTGGTAA TCGAGCACCTAAGCAGCGGGCTGCAGCATGTAGACGTGCTCACCAAATCG CTGCCACGTGAGGCTTTCTTGTTTTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig24923:2649..2825-

>mRNA_H-paniculata_contig24923.6774.1 ID=mRNA_H-paniculata_contig24923.6774.1|Name=mRNA_H-paniculata_contig24923.6774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig24923:2649..2825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAACTAGCTAAAAACCCTCTCAGTTCGGCGCGGACCAAACACGTTGA
CGCGCGCAATCATTTGTCATGTGAGCTAGTAGCAAGGAAGAAGTTGGTAA
TCGAGCACCTAAGCAGCGGGCTGCAGCATGTAGACGTGCTCACCAAATCG
CTGCCACGTGAGGCTTTCTTGTTTTATATTCAACTAGCTAAAAACCCTCT
CAGTTCGGCGCGGACCAAACACGTTGACGCGCGCAATCATTTGTCATGTG
AGCTAGTAGCAAGGAAGAAGTTGGTAATCGAGCACCTAAGCAGCGGGCTG
CAGCATGTAGACGTGCTCACCAAATCGCTGCCACGTGAGGCTTTCTTGTT
TTAT
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