mRNA_H-paniculata_contig2492.6773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 289 bits (740), Expect = 3.510e-89 Identity = 142/276 (51.45%), Postives = 188/276 (68.12%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIF-PTGQALERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDL-DVLEDADWAGVDGQRDREVAEPETDHGWVG 1219
L GN F D+ +S +S T FH+FC++FA ELY E+++ PTG+ L ++M +YDR+GF GAVGS DVTH W CP + AR YTGKEG T+A+Q TV SG LAVT+ F GAT DK+IIRYD AV + DP Y ++ ++L+ ++G E KG YLLVDNGYH+W L+PPSK + +SK L+S RKDVE +FG+LKGRF+I KL I + + E +DNVFF CCILHNMLH+ D+ D+ E+ +WAG G + +P TD+ VG
Sbjct: 91 LSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVG 366
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 291 bits (745), Expect = 5.910e-89 Identity = 145/276 (52.54%), Postives = 185/276 (67.03%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIF-PTGQALERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVLEDA-DWAGVDGQRDREVAEPETDHGWVG 1219
L GNCF D+ +S +S TA FH+F +FA E+Y EHIF PTG +++M +YDRLGF+GA GS DVTH W CP + AR+YTGKEG+ T+AYQ TV + LAVT F G+T DKSIIRYD AV + EDP Y ++ F ++ +GT + KG YLLVDNGYH+W L+PPSK + +SK L+SVRKDVE FFG++KGRF+ILKL I Y + E +DNVFF CCILHNMLH+ D+ +E+ +WAG G + P D VG
Sbjct: 166 LARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVG 441
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 287 bits (735), Expect = 1.200e-88 Identity = 143/278 (51.44%), Postives = 187/278 (67.27%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIF-PTGQ--ALERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVL-EDADWAGVDGQRDREVAEPETDHGWVG 1219
LG GNCF + Q+S MS T Q +FHKFC+HFA E+Y EHI+ P+ Q L+ +M +YDRLGF+GA+GS DVTH W CP + AR+YTGKEG T+ YQ TV +G A+AVT+ F +T DK+ + +D V+ + D Y ++TF ++NE+GT KG YLLVDNGYH+W +LM P+K L++ +SK L+SVRKDVE FFG+LKG F+I K+ + Y E E++DNVFF CCILHNMLHT D +D L E+ W G E E D VG
Sbjct: 106 LGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTGVATEQEADSSTVG 383
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 289 bits (740), Expect = 4.970e-88 Identity = 142/276 (51.45%), Postives = 188/276 (68.12%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIF-PTGQALERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDL-DVLEDADWAGVDGQRDREVAEPETDHGWVG 1219
L GN F D+ +S +S T FH+FC++FA ELY E+++ PTG+ L ++M +YDR+GF GAVGS DVTH W CP + AR YTGKEG T+A+Q TV SG LAVT+ F GAT DK+IIRYD AV + DP Y ++ ++L+ ++G E KG YLLVDNGYH+W L+PPSK + +SK L+S RKDVE +FG+LKGRF+I KL I + + E +DNVFF CCILHNMLH+ D+ D+ E+ +WAG G + +P TD+ VG
Sbjct: 182 LSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVG 457
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 286 bits (731), Expect = 2.000e-87 Identity = 153/306 (50.00%), Postives = 194/306 (63.40%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHI-FPTGQA--LERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYC----------------------------DRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVL-EDADWAGVDGQRDREVAEPETDHGWVG 1219
LG GNCF + Q+S MS T Q +FHKFC HFA E+Y E I PT ++ L+ +M +YDRLGFTGAVGS DVTH W CP + AR+YTGKEGF TIAYQ TV +G A+AVT+ F G+T DK+I+ +D AV+ + D Y ++TF ++NE+GT KG YLLVDNGYH+W +L+ PSK L++ +SK L+SVRKDVE FFG+LKGRF+ILKL + Y+ E++DNVFF C ILHNMLHT D +D L E+ +W G EPE D G VG
Sbjct: 93 LGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEPEADCGSVG 398
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 276 bits (707), Expect = 9.070e-85 Identity = 150/309 (48.54%), Postives = 186/309 (60.19%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIF-PTGQALERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVLED-ADWAGVDGQRDREVAEPETDHGWVGFR---------RNFGCDDGQTTRS*RSRSHISL 1291
LG GNCFDDV QLS MS+S AQ FHKFC HFA E++ EHI+ PTG L+ +M + +LG+TGA GS DVTH W+ CP + R++TGKEGF TIAY TV G LAVT F GAT DK+IIRYD V + Y +R ++L GT +G +L+VDNGYHEW L+ PSK +E T +S+ L+SVRKDV G F+ILKL + Y + E +DN+FF CCILHNMLHT D LDV E+ DW G G D +P TD+ VG + C +G R R H L
Sbjct: 44 LGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDV--------GCFRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLPPKEGEKAECGEGGHVRKERHPDHAEL 344
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 273 bits (699), Expect = 1.830e-82 Identity = 135/258 (52.33%), Postives = 175/258 (67.83%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIFPTGQA---LERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVLE-DADWAG 1159
LG GN F + LS MS T Q +FH+FCEHFA E+Y EHIF + L+R+M +Y++LGF GA+GS DVTH W CP + R+YTGKEG T+ YQ TV +G LAVT+ F G+T DK+II D AV + D Y ++ F + ++GT KG YL+VDNGYH+W ML+ PSK L++ +SK L+SVRKDVE FFG+LK RF+ILKL + Y++ E++D VFF CCILHNMLHT D + LE D +W G
Sbjct: 135 LGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVG 392
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 256 bits (654), Expect = 2.020e-77 Identity = 136/278 (48.92%), Postives = 176/278 (63.31%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHI-FPTGQA--LERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVL-EDADWAGVDGQRDREVAEPETDHGWVG 1219
LG GNCF + Q+S MS T Q +FHKFC FA E+Y EHI P ++ L +M +YDRLG CP + AR+YTGK+ F TIAYQ TV + A+AVT+ F G+T DK+I+ +D AV + D Y ++TF L+NE+GT KG Y L DNGYH+W +L+ PSK L+++ +SK L+SVRKDVE FFG+LKGRF+ILKL + Y+ E++DNVFF CCILHNMLHT D +D L E+ +W G EPE D G G
Sbjct: 28 LGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFG 288
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 253 bits (646), Expect = 9.770e-77 Identity = 126/243 (51.85%), Postives = 169/243 (69.55%), Query Frame = 2
Query: 503 LYHEHI-FPTGQA--LERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHTRDDLDVL-EDADWAGVDGQRDREVAEPETDHGWVG 1219
+Y EHI PT ++ L+ ++ +YDRLGFTGA+GS DVTH W CP + AR+YTGKEGF TI YQ TV +G A+AVT+ F G+T DK+ + +D AV+ + D Y ++TF ++N++GT KG Y+LVDNGYH+W +L+ PSK L++ +SK L+SVRKDVE FFG+LKGR +IL L + ++ E++DNVFF CCILHNMLHT D +D L E+ +W G V EPE D G VG
Sbjct: 1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVG 243
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 256 bits (653), Expect = 9.900e-77 Identity = 128/241 (53.11%), Postives = 163/241 (67.63%), Query Frame = 2
Query: 398 LGTGNCFDDVCQLSLMSESTAQVIFHKFCEHFALELYHEHIF-PTGQALERIMHEYDRLGFTGAVGSPDVTHTKWDCCPCSFARTYTGKEGFATIAYQATVGRSGCALAVTKSFPGATKDKSIIRYDVAVQTVGEDPTYCDRTFRLFNEEGTWMEHKGVYLLVDNGYHEWAMLMPPSKGSLTDEQTRWSKTLKSVRKDVESFFGVLKGRFKILKLPIFYRENEKMDNVFFACCILHNMLHT 1117
LG GNCFDDV QLS MSES AQ +FHKFC H A E++ EHI+ PTG L+ +M + +LG TGA GS DVTH + CP + R++TGKEGF TIAY+ TV +G ALAVT F G T DK+ IRYD V + + Y +R ++L GT +G +L+VDNGY+E ++E T +S+ L+SVRKDVE FFG+LKGRF+ILKL + Y + E +DN+FF CCILHNMLHT
Sbjct: 140 LGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2492.6773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2492.6773.1 >prot_H-paniculata_contig2492.6773.1 ID=prot_H-paniculata_contig2492.6773.1|Name=mRNA_H-paniculata_contig2492.6773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp MSESTAQVIFHKFCEHFALELYHEHIFPTGQALERIMHEYDRLGFTGAVGback to top mRNA from alignment at H-paniculata_contig2492:1159..4376- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2492.6773.1 ID=mRNA_H-paniculata_contig2492.6773.1|Name=mRNA_H-paniculata_contig2492.6773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3218bp|location=Sequence derived from alignment at H-paniculata_contig2492:1159..4376- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2492:1159..4376- >mRNA_H-paniculata_contig2492.6773.1 ID=mRNA_H-paniculata_contig2492.6773.1|Name=mRNA_H-paniculata_contig2492.6773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig2492:1159..4376- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |