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Homology
BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Match: D7FXJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ2_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.510e-27 Identity = 72/127 (56.69%), Postives = 79/127 (62.20%), Query Frame = 2
Query: 5 SRQPDAFLIVCGDHFGLVVDRPPCVRDSKEVMDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAAVAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVW 385
S PDA L+VCGDHFGL+VDR DS + R GLVG VD AI RGDR +ALELLSLEASHGRV A+ GR PWTV+CSLHPWLE RRP LGS L I+ D LS W
Sbjct: 288 SSAPDALLVVCGDHFGLIVDR-----DSGLMEAGGSSRGGKGGLVGRVDDAIARGDRRRALELLSLEASHGRV--------SAQKGR-----LPWTVNCSLHPWLENRRPFLGSVLTIAPDSLSADW 396
BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP) HSP 1 Score: 77.4 bits (189), Expect = 7.030e-12 Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 2
Query: 17 DAFLIVCGDHFGLVVDRPPCVRDSKEVMDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAAVAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVWQ 388
DA LIVCG+HF V+DRP M D ER+ L LVD ++ G+R +A++ LSLE HGRV G + W VD +LHPW G+R L +++ E ++W+
Sbjct: 230 DAILIVCGNHFNFVMDRPT-------KMPFDPERQSHASLQDLVDKLVQEGNREEAMKYLSLEGCHGRVSG----------------ANAWVVDNALHPWKIGKRLLSPDEVMVKYGENKVMWK 330
BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.510e-11 Identity = 50/127 (39.37%), Postives = 58/127 (45.67%), Query Frame = 2
Query: 17 DAFLIVCGDHFGLVVDRPPCVRDSKEVMDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAAVAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVWQHKI 397
DAFLIVCGDHFG V DR R G+ LV +VDAA+KRGDR A L L+A HG RR+ W +D SL PWL G L S L +S+ W I
Sbjct: 219 DAFLIVCGDHFGYVEDRAAAAR---------GDWGRYASLVEVVDAAVKRGDRGAAEAYLDLKACHGM----------------RREGGAWVIDYSLQPWLVGTTLLHSSDLELSSGGKEFKWNGAI 320
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 96.7 |
| Seed ortholog evalue | 1.7e-17 |
| Seed eggNOG ortholog | 2880.D7FXJ2 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2C8UU@1,2S355@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 1333 |
| Cds size | 759 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2474.6710.1 >prot_H-paniculata_contig2474.6710.1 ID=prot_H-paniculata_contig2474.6710.1|Name=mRNA_H-paniculata_contig2474.6710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAA
VAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVWQHKI
NGTRCDSNHDEQEHRHQHGEPSSSPPAAWRSSGDPGYFPSTAVRAGPNIS
PARAAAQSCGEEKEVEEEPRGKEQSSERFAEWPGESRCRWTGVSLEGMWD
VMESTLQGSGSLQTLLEDSGARVIKDKDKDENEDEDGRRVGKRGNEFPRA
KL* back to topmRNA from alignment at H-paniculata_contig2474:1679..6233+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2474.6710.1 ID=mRNA_H-paniculata_contig2474.6710.1|Name=mRNA_H-paniculata_contig2474.6710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4555bp|location=Sequence derived from alignment at H-paniculata_contig2474:1679..6233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAGCAGACAGCCGGACGCCTTTTTGATAGTGTGCGGTGATCACTTCG
GTCTGGTGGTCGATCGCCCGCCATGCGTACGAGACTCGAAGGAGGTTATG
GATAAGGACGGGGAGAGGGAAGATATAACGGGGTTGGTGGGGTTGGTGGA
CGCTGCCATAAAGCGTGGGGACCGAGCGAAGGCTTTAGAACTTTTGTCGC
TGGAGGCGTCGCACGGCAGGGTCAGGGGACGAGAAGGTAAATGATGCCCA
CACGTCGGAAGAATCATGACTCGCAGTTGTGGCTCGCCACGTGTGGTATT
TTTGGCCTTGTTTTTGGCCGAGATGACGAAATAAACCAATTTTTGACTCG
CAGGAGGTTTTTGAGATGACTCGAGTAGACCGAATTTCGACTTGTGGAAG
TTTGGGGGTGCGACTCGAGTAAACCGAGCTAGACTCGTGTGAGCTTTGGG
TGATGAGGCAAGATGGATGAACACGTAATATGATTACACTGTACACAGCG
TTTGGGGTCCCGAGTGTATCGGGGATATCTTGGGAAAGAAAGGGATGCGG
TGTAGAATTGTTTAACAGGGCTTCCTCTGTGCCGTACGTTGATCAGTGTT
TTCGGTATCAATAGGCTGTTGGTGTGTGTGTTACACGGTTATCATCCTAG
GTACGGCAAGTGGATATCCCTATGAAAGTGTTTTTGGGTTATATTTTCGG
TCGTCGAAGGGTGTACGGTAGCTAGCAGACAGAACGTATAGATACAAGCT
TCTATTCGTGACTAACGCTCCAGCAAAGAAAGGCTTCCAGGCTGCGCTCT
GCAGTAAAGGTGTAGCAGAACAGACTGAATCCAACAAGACAAGTAAAAAA
CGCCTTCTGCGAAAGATTGAAATATAGAATTTTTAAACAAGATCGGACAC
GATACTGCGGAGGGTAGCTTGTTGATTGCACTAAATTCTGCTTCTTTTAT
ACGAGTCAGGCATTACCCATTTTCCTATAACAAACATTTTGGGCGTTTTT
TTTTTTGTTTTTTTTTTCCCAGGCTTTTTTGTATCAATTTTTTTTAGGTG
TTAAATAATTAAATTAGTGCTTGCGATTTTATTGGCAGGGATCTATTCGG
ACAAGGGTGTTACGTCCTGGAGGATGCTGTTTTGGGGATCTCCAGGATAA
CAGGGCAAAAACAATCCCTGATACTTCGTATAGGGACAATAACGTCTCAG
TTTTCCTACACGCCAGTTTTATTACGATATCCCCATCAATTTTTATACAT
ATCTCGGATGAAAAGTTCGAAGAAGGTTGCCACCAATTTTTGAACTATGA
ATATGACAGCACGAGAATACCTGACGCGTTCCAAAACCAGTTCGAATCGA
TAGACAGCTGCAGGTCCTCCACCCCTTCGTGGAGTGTTCGTTGATTCTAG
AGTATAACACATTTTTCTACTTTGGAGCATGAAGATGAACTAAAAGGTTA
AAGGTTCCATGAAATTTGTTATTTACTTGAAAAAAAAAAAATCATCCAAG
CAATGGAATTTTTGTCCGGCCAAAGTATCCCGATTTCTGTAGACCCAGGC
GCCGGAGGGGACTACTCGCAGCTTGGGTGCCTTTGTGCCGCTATTAAACA
TACAGGCAATGTAAGACTTGGGTCAGAAATGAGACCCGCACTCACTACAA
TCCTTGAGATGCCTCCTAGGTTTTGGACAGAATACGGGCTACCCTACCCA
TGTGGCTGGAGAAGGACATTACCCCCCAGACGAATATGAATACGAATACG
AATACTGAATGCTTTGTTGAGCAATCATCACGTTTTTTTTTTCTTTTTAG
CGACTAAAGGTTTAGCAGGAGCGAGCGACCCTGGACGATCTACGACTGCT
CCGAATAATAAGACGGATTATTAAGCAGGAGCCAACACCTTATTTGTTTT
TATGTGCCATCCCGCATGTGCTGAAATAAAACTCCGATTCGTTGTTTTTT
TGTTTTTTTTTCTATCAATTATTTAAAGTGTTGTATCGTATTCGCCCCGG
GGTGCATGCTTTTACTCGTAATATTTAAAAATCGATCGACCACGCCAATG
TAATTAATCGCCAGCACGGATTAGTCACTGGCTGCGCCGCCAGCCGATCA
TGAATCACACTGGCAGATGCTCTCGATGCGTAGCCCTCGATAGGATAGGT
GTGGTCTCTACTGAGCAGTTTTTATAACGCCGTCAAGCACGTGGTATTCA
CATATTTATGTAAATGTGTGCGAGTGTTACGATATTTATGTACATGTGTA
AAGGTGCAATGGGGTAGGGTTTGTGGTACATTTATTTTTGTGTTAGCGGG
TGCGAAATATAACAACCCAGTTATGACAGGTGCAAGGCGATTAAATCTTA
TGTATGTATGTATGTGTTTGTGTGTTGATATTCAGTTTGGAAGTGGTTGC
AATTTCGACCACTACTACCGACACTGCCGTCTATATTCTTTGTTCTTATC
GTGGGAGAACTGGGGAGAGACCATCACCACCGTTATGTACCCAGGGCTGC
AGAGTGCAGTGGTCTCGGGCAAAGCCGTGCTTTGGGTTCTTCACGTGTAC
CTGTCTGTCATGGGAAAAGTGCAAGGGGTAAAAACACGACCGCGATGGAC
TGCGGGTTCACACGTGGGACACGCAATAAACTACCCTATTAGGCATCTTT
CCCCGAGATACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGTTGGGCATGTGTACATGCTGCATACTGTGAGTA
TGGTAGACCTGGATTCAATCCACTTGTTGTGTGCTGCAAGAGCTGAAACT
AAGTGTTGACAACCACGCCTTGTACCCACCTTGCTGTTAACTAACTTCCC
ACCGTCCTCATGTTATCTCACCCCATCCCATCGCTCGCCCGTCAATCGAC
TCTGGAGAAAAATAATCAGAGGCCTAAGGTCACCACGGGTTTGCGTAATG
CTCCCCCCCCACTCATTGAACATCAATGTTCGACTGTACTCGCACAATAT
ATATATATATATACACACACACACATGCACACACACATTCTTTATCGTCC
ATAGCACGAGGGGGAGCATGGCGAGTAATAGGTTTATTTATAAGTCAAGT
CTAGTTGCTAAATGTAAAGAACTGAGGAAATTCCAAGCCGCCGCGACAGG
GAAAAAAATGTACAGTCATCCATGTGTCATGTACCAACCAAGCAAAATAG
TTAGCGGCACATGGTCGTGGGTGCGATGAAGTTTTTGCTGGTCATGTTGT
CATGTCTTTTCCCCTATGCCCTTCTTGGGAATGGAAGTGCTCATGTCACA
ATGTTGTAACACAATACCTTGTGTACGGAAGCCCATATTATTCATACATT
GCCCGTGAATGAGATTTTTTCCCTCTCTTCATCTGTCTTCGTTTTCACAT
ATCGTGGGGACGTGGACTGGCTCTAAAATCCCGGGTAATATTCGGCGCGC
TGCGGCAGGAGCAGCAGCAGTAGCTGAACCAGGAAGAGGACGACGACAAG
TTTCACCATGGACTGTAGATTGTTCCCTCCATCCTTGGCTCGAAGGCCGA
CGACCTCTGCTAGGCTCGACCCTGGTAATTTCGACAGACGAGCTCTCACT
TGTGTGGCAGCACAAGATCAACGGAACACGATGCGACTCCAATCACGACG
AGCAGGAGCACCGACATCAGCACGGCGAGCCGTCATCTTCACCACCCGCC
GCCTGGCGGAGCAGCGGCGATCCAGGGTACTTCCCATCGACTGCGGTGCG
GGCCGGTCCAAATATTTCGCCGGCTCGGGCTGCGGCACAAAGTTGCGGGG
AGGAGAAGGAGGTTGAGGAGGAGCCTCGAGGTAAAGAACAATCCTCGGAG
CGGTTCGCGGAATGGCCTGGAGAATCGCGGTGCCGCTGGACAGGAGTTTC
GCTGGAAGGCATGTGGGATGTGATGGAGAGTACGCTACAGGGGTCTGGCT
CGCTGCAGACTTTGCTGGAAGACTCTGGGGCACGTGTGATCAAGGATAAG
GATAAGGATGAGAATGAGGATGAGGATGGTAGGCGGGTGGGCAAACGGGG
GAACGAATTCCCGAGAGCCAAGTTGTGAAATAGTTATCTACGGAAGAACG
CGACCAACAAGATTGCTTGCAACGTTATGTGTTGCGCTGAAAAATGTTGG
GCACCTCGCTGCTGTTATTGGATCTAGGCTGGGCCGGATGGGTGCCCAGG
GCGAGTAGGGAGTGAGGGATTGGGCTATACCGATAAAGGACGAGGGGTAC
CAATTTATGCTATATAGTGGAAATCCAGCCTCGTTTATTGTTTACTTCTA
TGCAAACTTGAGCCTGGATTACTGGTAACCCGATTTCTTAAGTAAAGTAC
AATTACTGTAGAGTAGGGCGGTAGAGGATTCCACAAGAAGAGGGTATTGT
ATACACACAGACGGTAGTTAATTGTCGCGCCGAGTAGAAACGCTAGCCGT
TGTACGCTGCGGCCACTGCGGGTCCACCCTACAGTGTTGAAAATCACCTG
ACTGGAAGCTATATCGCGGTCGACGCACACTATCATCTCAGGTCAGCAGC
AGTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2474:1679..6233+ >mRNA_H-paniculata_contig2474.6710.1 ID=mRNA_H-paniculata_contig2474.6710.1|Name=mRNA_H-paniculata_contig2474.6710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig2474:1679..6233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAAGGACGGGGAGAGGGAAGATATAACGGGGTTGGTGGGGTTGGT
GGACGCTGCCATAAAGCGTGGGGACCGAGCGAAGGCTTTAGAACTTTTGT
CGCTGGAGGCGTCGCACGGCAGGGTCAGGGGACGAGAAGATGGATAAGGA
CGGGGAGAGGGAAGATATAACGGGGTTGGTGGGGTTGGTGGACGCTGCCA
TAAAGCGTGGGGACCGAGCGAAGGCTTTAGAACTTTTGTCGCTGGAGGCG
TCGCACGGCAGGGTCAGGGGACGAGAAGGAGCAGCAGCAGTAGCTGAACC
AGGAAGAGGACGACGACAAGTTTCACCATGGACTGTAGATTGTTCCCTCC
ATCCTTGGCTCGAAGGCCGACGACCTCTGCTAGGCTCGACCCTGGTAATT
TCGACAGACGAGCTCTCACTTGTGTGGCAGCACAAGATCAACGGAACACG
ATGCGACTCCAATCACGACGAGCAGGAGCACCGACATCAGCACGGCGAGC
CGTCATCTTCACCACCCGCCGCCTGGCGGAGCAGCGGCGATCCAGGGTAC
TTCCCATCGACTGCGGTGCGGGCCGGTCCAAATATTTCGCCGGCTCGGGC
TGCGGCACAAAGTTGCGGGGAGGAGAAGGAGGTTGAGGAGGAGCCTCGAG
GTAAAGAACAATCCTCGGAGCGGTTCGCGGAATGGCCTGGAGAATCGCGG
TGCCGCTGGACAGGAGTTTCGCTGGAAGGCATGTGGGATGTGATGGAGAG
TACGCTACAGGGGTCTGGCTCGCTGCAGACTTTGCTGGAAGACTCTGGGG
CACGTGTGATCAAGGATAAGGATAAGGATGAGAATGAGGATGAGGATGGT
AGGCGGGTGGGCAAACGGGGGAACGAATTCCCGAGAGCCAAGTTGTGAGA
GCAGCAGCAGTAGCTGAACCAGGAAGAGGACGACGACAAGTTTCACCATG
GACTGTAGATTGTTCCCTCCATCCTTGGCTCGAAGGCCGACGACCTCTGC
TAGGCTCGACCCTGGTAATTTCGACAGACGAGCTCTCACTTGTGTGGCAG
CACAAGATCAACGGAACACGATGCGACTCCAATCACGACGAGCAGGAGCA
CCGACATCAGCACGGCGAGCCGTCATCTTCACCACCCGCCGCCTGGCGGA
GCAGCGGCGATCCAGGGTACTTCCCATCGACTGCGGTGCGGGCCGGTCCA
AATATTTCGCCGGCTCGGGCTGCGGCACAAAGTTGCGGGGAGGAGAAGGA
GGTTGAGGAGGAGCCTCGAGGTAAAGAACAATCCTCGGAGCGGTTCGCGG
AATGGCCTGGAGAATCGCGGTGCCGCTGGACAGGAGTTTCGCTGGAAGGC
ATGTGGGATGTGATGGAGAGTACGCTACAGGGGTCTGGCTCGCTGCAGAC
TTTGCTGGAAGACTCTGGGGCACGTGTGATCAAGGATAAGGATAAGGATG
AGAATGAGGATGAGGATGGTAGGCGGGTGGGCAAACGGGGGAACGAATTC
CCGAGAGCCAAGTTGTGA back to top
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